*************Found a new SSR******************** Sequences: ctg1113140262044 Period size: 4 Copynumber: 6.2 Consensus size: 4 122 CAGTGGTATT 132 AACC AACC AACC AACC AACC AACC A 1 AACC AACC AACC AACC AACC AACC A 157 CAGTGTTTTA Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 21 1.00 ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00 Consensus pattern (4 bp): AACC Left flanking sequence: Indices 1 -- 131 TGGTACGCATAAAGAATAACATGCTGGGTAGTTGTGTGGCTATGTTGATGCTGACTAATAGGATT ACTCTGCCGTTCTCTGTGCGTACCAAGTACGCATGCATGGGACACACTGGGGTATTCAGTGGTAT T Right flanking sequence: Indices 157 -- 656 CAGTGTTTTACGATTTAATTCTAATACATTGGTTTCTGTGTCGGGTTATGCATGCTTACTAAGGA GTAGTGTGCTCTTCTCCATGCGTACTTGGTACGCATAAAGAATAACATGCTGGGTAGTTGTGTGG CTATGTTGATGCTGACTAATAGGATTACTCTGCCGTTCTCTGTGCGTACCAAGTACGCATAAGAC ACACTGGGGCATGCAATGGTATCAACCAACCAACCAACCACAGCGTTATACAATTTAATTCTAAT ACACTGGTTTCTGTGTCAGGTTATGCATGCTTACTAAGGAGTAGTGTGCTCTTCTCCATGCGTAC TTGGTACGCATAAAGAATAACATGCTGGGTAGTAGTGTGGCTATGTTGATGCTGACTAATGGGGT TGCTCTGCCGTTCTCTGTGCGTACCAAGTATGCATAAGACACACTGGGGCACTTAACTAGAACGC ATCGGATTGTTCGCTCTACCACTCCGGACTCCAACATTGCATTAA Found at i:576 original size:235 final size:237 *************Found a new SSR******************** Sequences: ctg1113140264348 Period size: 4 Copynumber: 9.5 Consensus size: 4 744 ACTGTGGTTG 754 TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TG 1 TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TGGT TG 792 ATACCACTGC Statistics Matches: 34, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 34 1.00 ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50 Consensus pattern (4 bp): TGGT Left flanking sequence: Indices 254 -- 753 TGCAAATCACTCAAACAGTTGGACAGCCCAGTTCCTTCAGCATTGTAGTTTTGAGAACCAGAGGA AGTGTTGTGGTAAGTAGCACAAGAGGGACTGCAGTTTTAATAAGTTGGTACATATTCAGCATGGC CTTGTGGTACTCTTGATCTTCAACGATCTTGTGTATCTCATCCAGCATAATTTGAGTAAGTTTGC CCTTGCCACAAAGGCTGACAGGCCAAGTCTGGAAAATTTGCATCACTTGTTCAACCAAAATAAAT ACCAGGCCTGGGAATACAACCAGGACTCTAAGGGCACAGTTAGTAACATGGAGAGGCCTAGAATG CCCTCTGATGCTTGTTGTCTGGTTTTATGCTTGTTTGAAACTTTTCATACCTCTGGCTATGGGTA GATATGTTCTCAGCCTTTTCATACCCCTACCTATGCTACCTGATATTGAGTAGCAGCTGGCAATT TTCCGGATGCTATATCCAAGTTATATTATGAATACACTGTGGTTG Right flanking sequence: Indices 792 -- 1152 ATACCACTGCATACCCCAGTGTGTTTCATGTGTACTTGGTACACATGGAGAGCAGTGCAATACCT CTCAGTATGGCAATTTTACTGCCTTCTCATAGTTTTAAGTTAGGTTGTAGAGAGGAATTCACCAA GAATTTCTAGGGTAAATCAAGAATTGTGAAACAACCAGTGCCCATAAACAATCCAAAATTTGTCA AGGGGCTGCGAGACAGTAGTTGCACCCACCCTCAAGTTTTTGGCCAATTCTGTGGTGGTCACCCA CTGCATATGGACCCTAAGGGGTGGGGCAGCAGCAGGGGGGAAGGTGCAACAGGGGGCAGGAGGGT CAGGATATATATTGACCAAGGTGACAGGTGGTAGCA Done. rsol.ctg.fasta.s3741.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140264383

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 11323
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24


Found at i:1264 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140266745
    Period size: 4  Copynumber: 9.5  Consensus size: 4

       3189 AGTGGCGCGA

                                                             
       3199 AAGC AAGC AAGAC AAAGC AAGC AAGC AAGC AAGC AAGC AA
          1 AAGC AAGC AAG-C -AAGC AAGC AAGC AAGC AAGC AAGC AA

       3239 CTGTAAGTAA


Statistics
Matches: 34,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
   4   29  0.85
   5    2  0.06
   6    3  0.09

ACGTcount: A:0.55, C:0.23, G:0.23, T:0.00


Consensus pattern (4 bp):   
AAGC

Left flanking sequence: Indices 2699 -- 3198
TTTAAACGAGCTACATGCGAACAAGGCAAACCGCGCACAAAACGACCGAAACCTGAGAGCTACAG
AAGAAACGCACAAAACCAGCAGAACGTACAGAAGCAGACACAAAACGGTGTAGCAGGTAACAGTA
AGACAACAAAAGCCATGAGGGTTGAACGCGGATGTCACCTGATCGGTGCATACCAGTTGCATAAC
TTGCTAGTACCTTCGGTTAGGCTCATCAGGTCCAACCTGACAATAGTGCATATAGCCGGAAAGGG
TCACTTAAATGTTCCCATAATTGAATAGATAGTGAATATTAAATCTCATTACTATGAACACTAGA
AGTACATGCGTGATTTCGAGACTTTATTGTGCGGTGGCCAGCGAAGCAAAACAAGGCGCAATGAC
AAGATGAAACACTGCAACGAGGCCATAGGAGCAGTCGAGAGCACCCACCTACGTGCAAAACTGAG
TGAATAAACAATGAAAAAAAAAAAACACATGAGCGAGTGGCGCGA


Right flanking sequence: Indices 3239 -- 3738
CTGTAAGTAATGTGCTGTATCCATAGACCCAGAGTGCCCAGGAAATCCAATCACTTCCCCTAGCC
GAGCAGCACTGCCGATGTTTGTTGTGTAAAGTTGAATGGTGACACATTGTGTCGCTGATGATTGA
ATCAAGTTAGTCCAGCGCGTTTCCGACTCGACGGTGCTTCCCTACGTGCAGTAGACGTTCGTAAG
AAGCGGTGCGACAATCGGAGAACCGCAGCTTGATGTTCTCGAGTACCAGTATAAATAAGAGGCAG
GCATCGTAAGTGACATTGGAAACGCATTAGCCCTTGGCATTCACGGCTTAACAGTGCTTCCACTT
GCATGAATTTATACAAATGAAACGATGCGACAATCGTAGAAGCATAGCTCGGCGACCTCGAGTAC
CAATTTGAATAGGGGGAAGACGTGTTCCCAGCAGAGTAACGCGCAACACGCGTTCAAGACAGCCA
AGACCACTAATAATAAATACAAATCAGAATAGAAGTGAGCAGTGA



Done.
rsol.ctg.fasta.s4762.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266757

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 4942
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28


Found at i:800 original size:52 final size:54

*************Found a new SSR********************
 Sequences: ctg1113140267625
    Period size: 4  Copynumber: 7.0  Consensus size: 4

      46214 CCTACCCTAA

                                              
      46224 CGAC CGAC CGAC CGAC CGAC CGAC CGAC
          1 CGAC CGAC CGAC CGAC CGAC CGAC CGAC

      46252 GCTCCCGCTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   24  1.00

ACGTcount: A:0.25, C:0.50, G:0.25, T:0.00


Consensus pattern (4 bp):   
CGAC

Left flanking sequence: Indices 45724 -- 46223
ACACAACAAACAAACATCCGACCATGTTCGGCGAACGCCTCTTCACACACTTTCAATCCCGACGC
TTAGCACATGGCTCATTTCATCCTCGCGCTACATTCACATTTACCCCTGCTTCCCCCGTCCCCAG
ATCAAAAAATATAAACTCTCAAGGTCGAGCCCGGAACTCAAGGCCCTGAACCAGACCTTCGCAAC
TCATGTGCCCGAAATGAAGACCCCACGCTACTTTCCGTTCATTTCATGTACGTACACATTCGTGT
GGATTCGGGATTCATTTCGCCGTGGCGCATTGGGCATCAAACTATGCTCTCACTCGTGTACTGTA
CCTCCTGTCTCATCTACATAAACCGTCAAATCTATCCGGCCTCGGGTGGCACATGAATGAATTAA
TTTCGGGTTTGATAAGTTGCCCTTACTTCCACGCTATCGTGAACATGGGAGTATCAGCGCAGACG
GGTGGGCTTAAAGTGTTCAAGTCTGTCCTCGGCAACCTACCCTAA


Right flanking sequence: Indices 46252 -- 46751
GCTCCCGCTTATCCTAATACGCAGGTCGAGCCCAATGCAGTGCTCGAGGTTGGCACCGGGAGCTT
TTGGTTAGGGTATCATAACCGAGAACAACAACTTTGCGCGTACCATGGGAATTACACCTACAACC
AAGAAAGAACCAGAAAGTCGCATAAAAGCCGCATACAACAAGCTCAACCGCACACATTTACCCCC
TCCGCTCTGAAATGAAATGAAATAATCGGGATCCACGGCTTGAAATGTCGTTCACGGATGTCTCG
GCCAGTTTGTTTTATGTTAAATCCCAGATCAAGCGTGGCACACCGGGGTGCATCACGATTGATAT
GTAGTCTTCGAATGTTCGAATGTTGATCGTCTGAGCACCCTAAAACGTGGCGGACTGTCGCGGGA
GTGCCTATGACATTCGGCATTGGTCACCTACTTGCTACAACTTTTCCGTTCCTGTTCCGCGAGGG
CGATAAACTCGCATTGAACATCCGAACAGATGTGGCATTGCATCA



Done.
rsol.ctg.fasta.s5633.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267628

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 25245
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25


Found at i:5035 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140268042
    Period size: 4  Copynumber: 7.2  Consensus size: 4

       6131 AGTCTCAATG

                                                
       6141 TGGA TGGA TGGA TGGA TGGA TGGA TGGA T
          1 TGGA TGGA TGGA TGGA TGGA TGGA TGGA T

       6170 CTGTATCATA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   25  1.00

ACGTcount: A:0.24, C:0.00, G:0.48, T:0.28


Consensus pattern (4 bp):   
TGGA

Left flanking sequence: Indices 5641 -- 6140
CGATACGCAACCCAGTGAATACAACTAGATCCTCAACCAAAAAAGCCACAATAAAGATTCCAGCT
TCTACGACGTCAACTGCCCCTTCGACAACACGATCGTTATCTAGCATAGCGAGCTCTGATCTCGG
AGAGCTTAGCCTGGCTTCGTTCGAAATGGAAGCCACACCTGAAAAGCCAGACGTTGAAATGCCGT
TCTGGGAGGAATCGGAACTTATCGAGGCCCTCGTCCCGTCAACACCACAGAATAACGAGATCCGA
CAACTGCTCATCGATGCGCATAAGCAGAGTATGGCAGCGATGATGCTCGATCGTCAGAAAATGGA
AAAGGCGAGAAACGACCATCCCTTGCCAGCTGTGTTCTACAAGAAACGCTAGGCTAGAGTGACGA
CAAGGCCCTGGGCCGACCCTGTACAACATCACAATCTGGAACACCCTCCAACATGGTTTCCCACT
AACATATTTATCATGATATTGCAATTGTACTCAATAGTCTCAATG


Right flanking sequence: Indices 6170 -- 6669
CTGTATCATAAATGTCTACCAGATTCCGTTTACTAAACACTTTGAATGCCGCTAAAGAAATAATA
CAGAAAATGAGAAGCATATGCGGATACTATAAACAACGGGAATAATCCGAGCAGGCAGAGATAGA
ATAACAATGACAGCAAGAACAATGTTTCCAGTAATGGATTCAACCAAAATACAATCAGGACTCGA
GCGAACGGCGTCGCTTCATCCCCATCTCATCTACATCAGGCATATCCGCATCCTCGTCTTCAACA
GCAGAGTTGGTCATTTCGTGCAATGCACTCATGCGCCCACGTTTGCGCGAAGGCGTCGGAAGCGT
CCTGAATGCCAAAGAGTCGCAGTTGTATCTGCTAGTCCCCTCGGGCGGCGGGGAGGGAACGAATG
GTCGCCCAGATTCGATGGCTTCCCGTATCTTATCGATACTAATGAGTTCGTGATCCCAAGTCGGA
TGGGCGTCAAGCAGCGCATATGAGTGAGCAATCCAGGCAAAAATC



Done.
rsol.ctg.fasta.s6049.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268044

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 46983
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25


Found at i:32564 original size:48 final size:48