*************Found a new SSR******************** Sequences: ctg1113140259267 Period size: 5 Copynumber: 5.4 Consensus size: 5 607 GTGCCTGTCA 617 TCGTC TCGTC TCGTC TCGTC TCGTC TC 1 TCGTC TCGTC TCGTC TCGTC TCGTC TC 644 ACCGCAACGC Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 22 1.00 ACGTcount: A:0.00, C:0.41, G:0.19, T:0.41 Consensus pattern (5 bp): TCGTC Left flanking sequence: Indices 117 -- 616 TATCATTCTGATAATGTAATTAAATATAACTCACAGAATACAGTTGAAACCAATGGAATACAGTG GCTGGGTGAAAGATCTATACTACGGTGCTCAAGCGAGATCATTCCAGCAGCTTGAATCAAGAGCG AGTAGCACGCGTGAATGCGCGTGAACTCACGTGAATTTATGTCAGCCCAGACATATCATTACAGG GAGTGAATTCAATGGATTACTATCGAGTGACATCAGATATGATGGATCCCGTTGAATTCTAGTGA GTTCAAGTGAACTCCGTAAGCTTCTAAGGAATACCAGTGAATTCACGCACTCCCAGTGAGTTCAA GTGAATTCATGTGAGTTCTAGGGTGTCCACTCAGTCTCTGACCTCGGCTTATTTTTGTCCGATGC GGCCTCTCATAAATATACCACATGCTTAAATTTCAACTCCGATAAGTGTCGAGATGGGCGTTTGT CTCGCTTCTTTGCTGATGAGACGCCACGAGATAGGGTGCCTGTCA Right flanking sequence: Indices 644 -- 1143 ACCGCAACGCTAATCGACGTGTTATCATCACGTGCGGGTATTGATTACTACCTTATCATGATCTA ATCACTTTGTTCCATTACTATTTTTAATATGGACACCACTAACTGGTAGCACTTTGACATAAAAA GACTGACCACGTGGCTTAATCCTGGCGTTCGAGATCGTTCCCTCACCGCCGATCTCATAATTCTC AATTCGCGTTTTCAAACCGATTACTCAGAGCTTTGGACCTTCGCCGGAATCGCTACGGGACTCAT CTAATCAATCGCCTGCGCTCGAGCACGCGGCGGATCAACAATAAAATATCGCCTGACCTGTTGCC ATCTCATTATGGGTTGTATATATGACGCACCATACGTAGCTATGACCTACTTTCACTCTGAACAT CATAACTTTCTCAAATCTACCATCGTTGATTGGCTGGCCCTTGGTATATTCGGGCGCAGGATAGT TGCAACCAATGATCGGGCTTGCGTATGAGACGTCACTTTCTGGCT Done. rsol.ctg.fasta.s1651.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140259271

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1362
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26


Found at i:335 original size:20 final size:20

*************Found a new SSR********************
 Sequences: ctg1113140260804
    Period size: 5  Copynumber: 5.2  Consensus size: 5

        652 GGGTTGTGGT

                                           
        662 GAGAC GAGAC GAGAC GAGAC GAGAC G
          1 GAGAC GAGAC GAGAC GAGAC GAGAC G

        688 GTGGCAGGGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.38, C:0.19, G:0.42, T:0.00


Consensus pattern (5 bp):   
GAGAC

Left flanking sequence: Indices 162 -- 661
GGGCTGGTGTGTGAATCTTCAGTTTACATCTTAGATACCAATAGTCATACATCCACTAGTTGCAC
TGCCCTCTGTGTTTTATCTTGATTCTGTAATTATAAACCCCATAGTATTCCTGTATTTGGCTCAA
TATACAGCATTTACCGTATTTTTTTGACCCGTGAGAATCTAACTACCAGTAACGACAGCATCCTT
ATCCGTGCGTTCCCAGCATTCTGAAGCAAATATTCTGAGTGATAATACTGTAACCTCACAAGGGA
GGTCAGTGGCATACTGTTGATGAACGACTGTGGCACGCCAAGTGCCAGATCTAGTCAATTTCACA
CCTGAGGTCTCTCCAACGTCCCAGCAGGTCTCACGTGGGGGTCCGGTCCCCTGGATCTCTCGACC
TAACATCACTATGAGCTCGGCTCGGACTGCCTCAAAATATCAAATTTGGACCTCATATATCTAGG
TCAGATCGCGTAGCTGTGTAACTGTACTAGCGGTAGGGTTGTGGT


Right flanking sequence: Indices 688 -- 1187
GTGGCAGGGACCCTATCTCGTAGCGTCTCATCACGAAAGAAGCGAGACGTAGCGCTGTCTCGACA
CTTGTAGGAATTGAAATTAGATCATGTGATATAAACTAAAGTACTCGATATGGAACACGGAAACA
AAGATCTATTCAACAACATCATCACCGGTTGGCACAATACGTTCGCTGAAATCCAACTGTTGCGA
ATCCAGCTCAGAGGACCGTTGCCGACGAACTGAGTGCTTCACAACTTGAAGTGCTTCTACAAGCT
CTGCCGAGATGCGATTGCGCTCTCGAGTGCAAGTAAGCTTGCTTGAAGAGAAGACCCGCTCCGAA
GACACAGACGATGCCTGCGCAGGTAGTACATCAACCGCCATTCGATGGATCAAAGGCAGAACTTC
GCCGTTGTCCTAAGGTAATTGCAGATGTTAATACATTGATTCTGAGGGGGGGTTCCAATGTATTT
ACCTTCCAAAAATCGACAATATTAATATTCCTCTTCTTCAATGGG



Done.
rsol.ctg.fasta.s2293.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140260814

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 2313
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23


Found at i:674 original size:20 final size:20

*************Found a new SSR********************
 Sequences: ctg1113140261796
    Period size: 5  Copynumber: 5.2  Consensus size: 5

        771 GGCCTGTCAA

                                           
        781 GTCTC GTCTC GTCTC GTCTC GTCTC G
          1 GTCTC GTCTC GTCTC GTCTC GTCTC G

        807 GGCCATCTCG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.00, C:0.38, G:0.23, T:0.38


Consensus pattern (5 bp):   
GTCTC

Left flanking sequence: Indices 281 -- 780
TGCTTCCACTATGCTTTTCGTAACTAGTAGCTAACATATGTTGACTTTTATGTAGCAACTTCAGT
TGACGCGGAACGAGCATTCTCCGCTGGGCGACTGACAATCAATCAGTTACAGCATAACATGTCTT
CGGAAACCTTTGAAGCCAAAATGGCAGTTGGATCCTGGTATGGAACCCCGCTTCTTCCCGAGATA
TCTGATGTTGCGGCGATCATTTGCGATAGCATGTAGTTCAAACTCATATGTAATTTATCTATCTA
CTTATGGACATTTATCTTAAATTTGGACTTAGTTTGTAATCACCGGTTACCGTGGTCGCTCCACA
GTTGGTTCGGTAAGTTGACCGATCGGTAAGGCTTATTGCAAATTCAAACCGTTTACCACGAAAGC
CACGTGTTTACCACGGTATGAACCATGGTAGTGATCGATTTTACCATGTTGCTCCCTACTATCGA
GACGGGGACGCACTGGGGACGCTGTCTCATCAACCGGCCTGTCAA


Right flanking sequence: Indices 807 -- 1306
GGCCATCTCGATCTCGCCCCAACCCTACCTGGGACCAAACAAACCCCAGCTGACGTCATCGACTC
AAACTTATTCTGATCCACCACCGGCACGCGCCCTCGAAAAACTTATATCGAGATGGGTTGTATCT
TCCGCCCACCTGAGTGCGAACACACCAGACTTGAATGACCTTCGTACAATGGTTTGGCAGCACTG
ATTACCCAACCACACGACCACGATATCATAATCGATCGGTTGGAGTGGACCGTGTAGAAGGTTAT
ACTGGGGATATCTAATAAACTAGAGTGGATAGTAACAGGCATGTCGAAGTGCGTAGCCTACAACG
TACTTTTATTGCTAATGTCAATTTCCGCCCTTATTCATAGGTTCCAAATCCCACCACGTCTAACT
ATCCCCAAGACGACATGCCCGATTCAATACATCTGAACTCTCAGAGCTTGAGCAACGATTCTACC
GAGGATGATATATCTCGAACATGTTGCGATCGCTCGTACCGTCAT



Done.
rsol.ctg.fasta.s2697.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140261827

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 7164
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27


Found at i:5498 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140256185
    Period size: 5  Copynumber: 7.4  Consensus size: 5

        943 ACGAGACGAC

                    *                                   
        953 ACAAG ACGAG ACAAG ACAAG ACAAG ACAAG ACAAG AC
          1 ACAAG ACAAG ACAAG ACAAG ACAAG ACAAG ACAAG AC

        990 TTGACAGCAA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   5   30  1.00

ACGTcount: A:0.57, C:0.22, G:0.22, T:0.00


Consensus pattern (5 bp):   
ACAAG

Left flanking sequence: Indices 453 -- 952
GTTTTTACAAAACTGAAAGTTGTGTACATAAGCAATTCGAGAAGTTGAGAAGAGTAAATATTGCC
CAATTAGTCTCTGCCAAACTGGCCCAAGGAAAGCGAGGTTGAACTCCTCAAGCTACAATATGCTG
GCTGCTGCGCTTGTGCACGGTTGATTAAGGCTTTAGAATTATATCTAGGCTATAACTAATGCAGT
ATTCAATGAGTAACTATCTCAAAAGATTAGGAAGATCTTTTCAGGTTAATTTTATGGGTTTATTT
TGGCCTGCACTAGCGCCATAGAACCCAGCTCCCCCATGGCAAGGGGGGGTTTAAATTACATATAC
CGATTCATTTTTTGCCCAGGCACAAATCTCTACGCCCTCTAATCTCACAAACCAGAAAGCTGAAC
CCAAGAATTGAGAGGGGCCACTGAGGGGTCCAGACCCAAGCCTAAATCCAGTTGACAGAGGTCCC
GCAATTAGGGTTGTGTTGAGATAGAGATGGTCGAGACGAGACGAC


Right flanking sequence: Indices 990 -- 1489
TTGACAGCAAAGCTTGATGATACAGGGCCCCTCGTCTCGGTGGCCTTGTCGTGAGACTCAGCAAG
ATGATCACGTGTGAGGCTATGCATCACACCGCACGGGTTAATGTCTTCGCAGACCAGTGCGATGA
GCAGCTGAGAACAACGTTCTTACATTGGTATGCGTAATCCTATTCTGTGCGATTGCTACCCAATA
ATCCCAACTGAATTAGTGTAAGACAAATATACACTTGGCCTAGTTTGAACCCAAACTTGAAGAGT
GAGCATTTACCCAATATATGCGGGTAAACAATTGCAAGTCAATGAGGTCGTATCCGGTTATTAGG
TATCGGAAATTTACCGCTCGGCACTGGCCCAAGAGGCCTACTTCAGAAAGAGAACACAAACGTGG
TTGATTTCTGGCAGGTAAGTATTAGCATAAAGTGCCATAAATCAATCTTATTCACATATTGAAAT
CAGAGCTCACCACTAGTGTTTTCATTTACTTAGAGAAATGGCAAA


Done.
rsol.ctg.fasta.s2773.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140262019

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 2345
ACGTcount: A:0.21, C:0.33, G:0.24, T:0.22


Found at i:891 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140262680
    Period size: 5  Copynumber: 14.8  Consensus size: 5

        747 CTGACGTCTT

                                                                         
        757 TCTCC TCTCC TCTCC T-T-C TCTCC TCT-C -CTCC TCTCC TC-CTC TCCTCC
          1 TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTCC TCTC-C T-CTCC

                                          
        804 TCTCC TC-CTC TCCTCC TCTCC TCTC
          1 TCTCC TCTC-C T-CTCC TCTCC TCTC

        829 TGTTTCCCGC


Statistics
Matches: 57,  Mismatches: 0, Indels: 20
        0.74            0.00        0.26

Matches are distributed among these distances:
   3    4  0.07
   4    6  0.11
   5   39  0.68
   6    6  0.11
   7    2  0.04

ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40


Consensus pattern (5 bp):   
TCTCC

Left flanking sequence: Indices 257 -- 756
CCGTCTGAGTTGGTAACTACACGCCCCTTGAGTAAGGGTTGGCACCGAGAGACGGCAGTAATTCC
CGTCACTCGAATCTGCATGGCATGCCAGCTAGTCCCGAAGTACCACGAAGTCCCCGAAAGGGACC
CAATCTCATCGAGTGACGACTTACTTGAAACTTTCCCATGATTTTATTTCAATCCATATTCTTCT
TACTGTAGCTGGTCCCACTGGGATGATCATTGGGCTCGACTGGGTGTATTATAATGCATTAATTT
TAAATCAAATCGTACATCCTTTGCAGAGTTGCTGTTTTGACTTCTTACTTGCACACCGGTCCATC
AGTTTATTTCGTTGAATTATACAGCAGTACTTCCGACCGATTTATTGCAACCATTGGCCAAGAGT
GTCAAGTCCGGTGGCGCTTAGTCCTCGGCACTTACACGTAATCGCCGGCTTATGAATCGGCCCCA
CCATGACTGTCACTTGCATCTGACCGCCACCACCACTGACGTCTT


Right flanking sequence: Indices 829 -- 1328
TGTTTCCCGCCCTCCATCCCCCGGTTGCCATCCCACCGCCACCGTCGTCACTGCTGGGCTAACTG
CCCCTGGACGACTCGACCCACTCACGCACAACGGTAAGTCCAGGTGTTCGTGCTCTAGTTATACT
AAGGCTTATCTAGCGTGTCGCTAACCTCCGTACTCAGATGGCTGCCTCAAGACCTGACCTTGTGC
CCCTGAGGTCCGAGCCAATGACGTACAGGGGCAAGCAGTTAACAGACACAGGTAAGTGCCCAGGT
ATATTCACCTGTCGTTTGTCGCTAATTGCATGATCACACGGGCAGGGCGTGCGCTGAGGCCCCAC
CCAATGGGTAACATGAGTATCGGACTGTTTCGCGCTAAGCACTACTAACAACGTTCTGCAACAGG
CCCCCCAAGGCCCGTGTCGGGTCCTCGAGGCTGCCTGCACCACCTCCATCCCTGTTTGTTGCCCC
GTTGTGATCCCCCGTGTGGCCTTCGTGCGTGGTTCTCTTGTCCGT



Found at i:779 original size:8 final size:8

*************Found a new SSR********************
 Sequences: ctg1113140262755
    Period size: 5  Copynumber: 5.2  Consensus size: 5

        678 TACTGGTTAG

                                           
        688 AGGAA AGGAA AGGAA AGGAA AGGAA A
          1 AGGAA AGGAA AGGAA AGGAA AGGAA A

        714 AAAAACAAGC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00


Consensus pattern (5 bp):   
AGGAA

Left flanking sequence: Indices 188 -- 687
TTGTTCATAGCTCCTTGACATTGACATACTGCGATTAGTGATCCCACTGGGTACTCTTGGCACGG
CGACTTCCAGAACGGATGGGACACTGCAGTTCTCCAGACAGCTATCGACACCTGCAACGACCCTA
AGGATGATACCATTAACGGTATCATCGAGGCATGCAAGGTCTTCAAGCTCCAGGATGATGCTGTA
GGAAAGGCATGCAAAGCTGTTCCTGAGTTGACTGAAGCGGTCAGTGGCCAGTTGACTAAGCTCCC
CGGGTGAGTATATGCACTATTCGTGATGAGTGGGTAGCTAATATTGCATTGTTGTGCTAGTTGCA
ATCCGATCCAAGCTGGTCCGGGTGATGCTACTCTGTACTCGGACGCAAACTGCCCCGCTTGAGGT
CCATGGGTTTCTTTATAATTCGTTCAGGCACGGTTTTTTATCATATTGGTACATACGATCTTTGA
TGCAATGTATCTATAATTTTCAACTCGAGTTGGAATACTGGTTAG


Right flanking sequence: Indices 714 -- 1213
AAAAACAAGCCTATGAACAGAATCCGTTACCCCATCGAGGAGCATCGTGAAATTTCGAATTCGGC
CTCGGGCGACACTTCCAAGTAGTAACAAAGATGCTTCACCTCATCTTCGCTACGCCTCCGTAGCC
AAAATTCACCATGCCTATTAGTTCGCGAAACCTCTCACCGGTAATTACGGTGTAGACACAAAAGG
TGATGGTAGATAATTCGCACACTGGATTTGCACAACCGTGCAGTATTTACAATGTTGTTTTTTCC
CTCGATTTTCTAACCATAGCATTGCCGATCATGACACTGCAGTACTGGAGCATCTTAAGGGTTAA
ATATCCATGAATTGACCTTGTGTATACCAGCCTTGTGAATCACCTACTCTGAGGTTCTGAGAAGG
GAATTCTGGATTCAAGTCACCCAAATTGACATATGCCAAATATCTCATCGGAAGCCTATCCCGGA
TCCCCCAGAGTTGATAAAGGTTCTGAATGCAAGATATCCATTGCT



Done.
rsol.ctg.fasta.s3095.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140262759

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 12658
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.24


Found at i:8428 original size:30 final size:30

*************Found a new SSR********************
 Sequences: ctg1113140256345
    Period size: 5  Copynumber: 7.0  Consensus size: 5

        581 CGGCGCCAAT

                               *                     
        591 CGAAA CGAAA CGAAA CAAAA CGAAA CGAAA CGAAA
          1 CGAAA CGAAA CGAAA CGAAA CGAAA CGAAA CGAAA

        626 ACGCGTCGGA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   5   28  1.00

ACGTcount: A:0.63, C:0.20, G:0.17, T:0.00


Consensus pattern (5 bp):   
CGAAA

Left flanking sequence: Indices 91 -- 590
GTGACAGCGGGTGGGTGCATGTACTTACCGAGTTTACATCGGGTAAATTAGCACCCTGTCGTGCT
GCCTTTTGTTTTTTGTGTTGTGTCAGCAGAGAAAATATGGGAAAATTAAAATGCTTACCGAGTTG
GCAAGGTCGAGAAAAGCAGGGGGACTGCGGTTGCGCTCGGTGTTCCCTCCTCCTGGCGCACCGCG
TTGATCCAATGCAGGAGCCATGACCGGTGTGTTTAACAGGGCTGAATGAATACTAGTCGAAAATT
AATAGATCGGGTCTAAGCCAGACGGCGGTAGGTACGCTGGTAGTAGAGATAGTTGTATGGGTAGT
GCACAGATCTAGAGGAATCCAATCAGTAAGTGTTATGCATAACGTGGATAAATGCTCGGTACTCA
CCAAGAGTCCGAAAGCCGGATTTTTCTAGTCCGTCTGGGACTGGTGGTGGTACAGGTGGAAGAGC
ACTACAGGTCAGGTCAGCTGCTGAGCAAATAAGACCGGCGCCAAT


Right flanking sequence: Indices 626 -- 1125
ACGCGTCGGACCCCACTAAAAAATGCGGAAATGAAACTCGAATGGCTCACTCACAGATTAATGTG
GTCGTCTGTCCGAAGCGGGGCAATCGACAGGACGGTCTCTGCTGCGTCGCTTTTTCTCCTTAAAT
TTCACAAGTCGATTTCGATTGATAATACAACCAAGCATCAACCGCCACTGACGGTTAGTCTAATA
ACGAAATTGTTCTTCGCTTGCTCCGCTTCCCCGTCTCTCTTTGCTCCTGTTACGCGCACATAGAG
TCACATAGTACCGTGTCTACGGCTCTTTCAGATTCCCTCCTGGGATCTGAGCTCCTCCCTAATCA
AGACATATTTTTTTCGAGCACCTGTCCCGTCAAACCGTACCACGATCATTATGGCTTATCCCGGC
GGCGGGCTAGACTTCTATGGAAGATACTCTCTTCAAACGTCTCCGTTGACAGCAGCAATCAACTC
TTTGCTGTGTCATCACTCCCGGCTAATCCGGCTGGCCTGTAGGCT



Done.
rsol.ctg.fasta.s3614.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140264044

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1950
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28


Found at i:1477 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140266601
    Period size: 5  Copynumber: 14.6  Consensus size: 5

       2577 TTATATCTTC

                                                                       
       2587 TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA
          1 TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA TTTCA

                                       
       2637 TTTCA TTTCA TTTCA TTTCA TTT
          1 TTTCA TTTCA TTTCA TTTCA TTT

       2660 TCTTTCCCCG


Statistics
Matches: 68,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   68  1.00

ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62


Consensus pattern (5 bp):   
TTTCA

Left flanking sequence: Indices 2087 -- 2586
AGTGTATATGATGTAACCGTTTTTTGTGACATGCAGTTTTGAATTCAACTCTTTGAGTTCAAACT
TTGTATTCAGCATAAAATGAAATCAAAACAAAGTCCAGGCGGTGTATCTCAAAGTGTGATGATTT
CCCGGAGGAACGACGGGTCAGTAAAGCTCGTAACAACTGAACTCTATCGTCCCAGCTGCAGTGCA
ATTCTTTCAACCTTGCGATTTGCACTGTTTTAAGAAATGTATAGTAACTGTAACGTTAGAGATCA
ATTGTTATAAACAACTTTGCATAAACCAAATACGAGCGAGGCGAAGGTAAGTTAAACTGAAAGTC
GAACGAGTTGGCTGTCGAAGTAAATCGTATTAAGAGTATTCAAGTACAAGCTTCTGATTCTACAA
GCAAGGAATTGACAAGTCTTTTATAGCTTTTCTAGTGGGTTGCAAGACACGCGCATACATCCATT
CCAGGCCGGCCATGCTGTTAGAACGCGTATACGACTTATATCTTC


Right flanking sequence: Indices 2660 -- 3159
TCTTTCCCCGTCACTGCACCGAAAGTTTTCCCGATTTTGCCTTCCGTATATAACATGCACGCTAT
GCACCCATCCCTCAGCCGCCACGACCACCTTCGATTAATCATAACACCATGCGCGATATGCCTAG
TCCAAGTTACGACGGAATCTGACCCCCATTAATGGATAATGTTTGTCCTGGTGAGAATACGCGGT
GTGTATATTATTTTGAGCAGATGGTGGACACTTTAACAAGCATCTACTTACCGGTAATGTACGAC
GCTTCACGAGATGCAATGAAACTGACCAGAGCGGCCACCTCTTCAGGCTGTCCCATACGTTTAAG
AGGACCTGCTCGATCATCTATAACAGAATCAGAGTTTAGTATTCCAGGTTAAAAAAGTCGGGGAT
AGACCAACCTTTTGAATAAAGGCTTGGCCAGTCGATGTCGCTAGAATAATCCCGTTAACTTGGCG
CAAATCAATAAGGGACATCAGAACCCGACTTGCCTAATGGTGTGT



Done.
rsol.ctg.fasta.s4608.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266603

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 10298
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.24


Found at i:1443 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140267196
    Period size: 5  Copynumber: 5.2  Consensus size: 5

       9667 CGAAATGGCC

                                           
       9677 CGAGA CGAGA CGAGA CGAGA CGAGA C
          1 CGAGA CGAGA CGAGA CGAGA CGAGA C

       9703 AAGTTGCTTG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.38, C:0.23, G:0.38, T:0.00


Consensus pattern (5 bp):   
CGAGA

Left flanking sequence: Indices 9177 -- 9676
TTTCCCTGAACTTGCGTTGGTAGGTTAATGGTGAAATGGATTCATTCAAGTATATCGCTTAAGCT
TAGAATATGTTATTTTGTCGGTAGAAGTGAGTTGGCGTTACAGTATATTCACTTCCATTTAACTA
GTATGATTGCTCGATTGGCGATCGGTTTTGCAAAGCTGATCAGAGGTGAATGTTGGACCCCAGAC
CCCGTACGGACGAAATAATGCATGCGCCACAAGGCAACTCTCTAACCCCGTGAGTATTTTGGGTG
CGTAGACTCGTTAAGATCACACTCGTCTGTACATAGTAGATATATACATTTTCAGCCCAATTTGG
ACGACTTGGCTGAAAAGATCCACCGAAATCGGCCTTTCGTGTAGCAAAAACAAGCATTTACCTCG
ATTTTTCTACCAACGCTTGAAAGAAGCCGCCGGAAGCAAGTCAGCTTGCGGTCGATTGCTGTCAC
CAGCTTTAGCTCGATAACTAGGGTTGGGGCGAGACCGAAATGGCC


Right flanking sequence: Indices 9703 -- 10202
AAGTTGCTTGATGAGACAGGGTCCTATCTCGATTACCTCAGCCACGAGATGCTGGGCGAGACGAC
CACGTGCAAAGGGCTGCATCACCCAAACGGCCGGTTCATTGGATAGCATTTGGTAGATTTCAAAA
AAGTCCAATCATGATGTCGGATTTGAAGACATTATAACGCCATTGCAGCGCATTATGGAACCGGT
AATCATTTATACAGTAGAAATTGCATTATATAGAATTTAGAAATCTCAAAGGACATGCAAGCCAT
TTGTAATCGATAACTTAATTCGATAGTTATAGTAAACCAGCTCTAACGGGACTGGAACTTCTGGT
CAATCCTTAGGTATGGATTGGAGAGTACGTATCATCAAATACTCCCAATGCCAACGCCCTCGGTG
CAATTATACTCATTTTCTTGCCAAAGTGCTACCATGATCTATTCCTGAATCAACATATATGCAAG
ACAACCATTCGAGTACAAGGCCAACTCCCGCCAACCTCACTTTAG



Done.
rsol.ctg.fasta.s5208.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267203

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 7356
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26


Found at i:891 original size:29 final size:28

*************Found a new SSR********************
 Sequences: ctg1113140267445
    Period size: 5  Copynumber: 5.6  Consensus size: 5

       2013 GCTTGTACTA

                                             
       2023 CTTTT CTTTT CTTTT CTTTT CTTTT CTT
          1 CTTTT CTTTT CTTTT CTTTT CTTTT CTT

       2051 CCTTTTTGTC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   23  1.00

ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79


Consensus pattern (5 bp):   
CTTTT

Left flanking sequence: Indices 1523 -- 2022
CCAGGCCCCCAACCAAGCAAACGCGCTACCACTGACAATTCTAAGCGTCATGGTGCCGTGCCCCA
ACATAAGAAGAAGGCAACTCCGAGCCCTTCTGAGGCCGTGTTCTGCCCTGCTGGAATGACTGCAT
GCCCGATTGCGGGTATCTTCAGCGCCGAATTTGAATGCTTCGATGCCCTTGCCGACCTGAAGTCT
TGCGGAGGCTGCGCTTCCGTTGGCACTGGCCAAGACTGCACCACAATCCCCAACGTGAGCGTGTC
TTCCTGCGACAGTGGTTCGTGTACTGTCCTGTCTTGCAACGAAGGCTATATCGCCAACGAAGACA
AATCAGCTTGCGTCCCACATGGACACGAACTTTAATCACTGTTTTCCTTTGAGTCTTCACTCATT
ACGAACTCTTTCTTTTGATTGTCATGGACCTACTGCTGAGCTCCCCAGTACTTTCTCTTAAGCTA
TTCGAATCTTACGTTACACTCGCGGCTTGTACATAGCTTGTACTA


Right flanking sequence: Indices 2051 -- 2497
CCTTTTTGTCTTTTTGTGCATGCGACGGACACCTAAGTTGCGCACATATCATGTACTATACCGTT
ACGCCTGTAACTAAAAGTGTTGCTTCTGTGGATCAATAAATATCATGGATTATGCCAGACCGGGG
ATCTGTAGTATACACAGTGGTAACAACTTGCGGAAGTTGCGTTCATGCACGAAGGAACGTGAACT
TTCTCAAGCCTTATCCTGGTAAAGCTGACGACAGCGACAGCCCACCACCTGATCCGCGGAAAGGT
GCTTTTTTGCTTAGCGCCAAGCAGAACCAGAACTAAATGCGCATTTCCTCACCAACCAGGGTGAA
TTTGGACTACCGATGTGATGAAGTTGTTCAAAATGTAGTTCTCTGTGCGCATATATGATTTGTAT
CTTTGACAGTGAGCCATACGCGACTGTGCACCCCAAATACCCATGGGTTAGGTGGCC



Done.
rsol.ctg.fasta.s5451.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267446

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 28402
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26


Found at i:12867 original size:14 final size:14

*************Found a new SSR********************
 Sequences: ctg1113140267459
    Period size: 5  Copynumber: 11.4  Consensus size: 5

       2342 ATGAACTTAG

                                                                       
       2352 ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA
          1 ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA ACCTA

                    
       2402 ACCTA AC
          1 ACCTA AC

       2409 GAGCATACTG


Statistics
Matches: 52,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   52  1.00

ACGTcount: A:0.40, C:0.40, G:0.00, T:0.19


Consensus pattern (5 bp):   
ACCTA

Left flanking sequence: Indices 1852 -- 2351
GACTGTGCAGATACATCTGTACCATCGCTCTCGCAACGTCAATTCTTTACGATTAATCTGGGCTC
CTACATCTCATAATAAACCAACATCTACCGAGTGCTTATCACACCAGCCCAATGCCATTTTCTCT
TGACATTTCTTGGGTCATACTTCGTCCCGGCCGTTCGATCCTTGACTTCGTCAAATAACCCTTCT
AACGTCTATATAGCTGCAACCACCGTATCCTGACTGGGAATTCTGATTCATCTAGCTAGAGCCTT
TCGTTAAATACGTTACGACAATGGTGTTTTGCGTCCTCAAGCCGGGCCGTTTTTATTCTCAGGCT
TACCACAACAAACTGCTGCTTTTGTTCAACTCCATTCCATGATGCTCTGATATGTTCAATGCGAG
GCACCTTGCTTCATCGGTCACCAGCTTACCCTGACCACTCTCTTGTTTCGCGTCATCCGCTTTCT
CTTCCTTGCTACTATCATCCCTTTGGTCCTTGGCTATGAACTTAG


Right flanking sequence: Indices 2409 -- 2908
GAGCATACTGCCGATGCTGACGTCTCAGCTTGGGACTGCAGAATGAGCAAACGCGAGGGCGAATA
TGAGCACGAGGCTCAGAACCGTGAGCACTTCCAGTGCCTTGGGTTCTTGCCCGTCCGTCACAACT
CATGTGGTTTCCTGCCCAAAGGCACAGGTAATCCTGGAATTCCTACGCTAAGCCTGAACTCCCCC
ATGGCCAATGTACATGGTACCTCGCCCCTCCCTCACCAATACAATCTAACAAGGATTCTGGGCGC
ATATAGAACACCCTACTCATGTTTTCTCTTTTTTTTTACCCTAAGTTCAACTATCATCCACCACA
GGCTCTTTTTTCCTCCCATATGTTGCATATTGCGTGTATCCTGTCTGTTCCTACTCGTCAATGAA
CGGTGTATTTGTGTGCTTTCTCTTGCTTGTTTCGCATTTTGCCCCACACTTTCATTAGAAGTACC
AACACATCTGAGGTTTGATGCCTGAATTCAACACGCAACACGCAA



Done.
rsol.ctg.fasta.s5472.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267467

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 34076
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25


Found at i:2642 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140267491
    Period size: 5  Copynumber: 17.0  Consensus size: 5

       7870 TTCCCGGACT

                                                                       
       7880 CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA
          1 CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA

                                                     
       7930 CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA
          1 CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA CCTAA

       7965 TTGGTAATCG


Statistics
Matches: 80,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   80  1.00

ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20


Consensus pattern (5 bp):   
CCTAA

Left flanking sequence: Indices 7380 -- 7879
CTCCGATCCAGCTCTCAAGGTAATTTTCAGACATATAATTGACCCAAAAATGTTCAATTTCATTT
GTCTTTAGAACTTCCTACCTCGACTCAAATCACACCTCCTTGCACGCATTCGGAACGAACGGTAT
GAGGAGGAAACTAACTACCCCGCCGCCGACCTTGCACAGATACATTTCCAATATGATTGAATATA
TGCGCATCAGACTCTCAAGCTTCACTACACAACGTATGATGTGCGACGCGGTCAAGACGCGGTCA
ATCCCAATACCCTTAAACGCTTTATAATGGTCACATCCGACAAACCAATGGACTCGGAGACGGGT
GCTGACCGATTTTGGTACGCACGGGTTCTCGGGATTTACCACGCGAACGTTTCGTACAGGGGCTC
TCGCCCAACCCGAATGGATTTTCTTTGGGTTCGATGGCTAGCCCATATGATGGACGTGCCAGGTG
GATGGGAGACTTGCCGGTTAGATCAAGTTGGGTATTTCCCGGACT


Right flanking sequence: Indices 7965 -- 8464
TTGGTAATCGAATGACAGAGTATCTTTTGTCGCCGGAGTCTGTTGTTGCGGATGATCAATCTGTT
GGAGATTGGAAGCACTACTACATTGGCCGGTAAGCACTTTAATCGTTATTTTTACATATATGTCG
GCTCCCTCTTATTCGTAGTCCTGACTTCTAAATGGATTTTGTAGATTCGTAGACCGGGACATGCT
AATGCGCTTCATTGGTATGGCCATTGGTCATATGACACATAGTAATGCACCCAAGGCAACAGTCG
GTGTCTCCGCTGAAGCTCTTGGAGCAGGTAAGTATTCATCAAATCAACTTGCTTCCATCAACTTA
ATGTAGCATTACTCTCATAGACTACGAGTACACGGACGAAGCGGCAAAAAATCAGTTTGGCGCAT
TTGAGTGCGCAGAAGAGGCGGCGAGTGACGGCGAGGATAGTGACAGTTGCATAGAAGCATATAGC
AGCGAAGGTGATGGGAAGGATGCCGGTGATGAGGACGATGACGAT



Done.
rsol.ctg.fasta.s5502.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267497

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 40178
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25


Found at i:27345 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140267875
    Period size: 5  Copynumber: 18.4  Consensus size: 5

       1988 TATCCACAGA

                                                                       
       1998 CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC
          1 CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC

                                                              
       2048 CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CA
          1 CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CA

       2090 TTTTACACGC


Statistics
Matches: 87,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   87  1.00

ACGTcount: A:0.60, C:0.40, G:0.00, T:0.00


Consensus pattern (5 bp):   
CAAAC

Left flanking sequence: Indices 1498 -- 1997
AGGTATCCGGCTCCGAGGAACCCAGATGCTTGATATGGTAGACAAGTCATCAAAACCAATTTACA
GCATTGGGTAAGTGGCGAAATGAATAGTGGTGGGATGGGATGAGAGTCAGCGACCGAAGCATGCG
CATACATGCGCAATAACTGTTGTGCTATTTTAGCATATGATCCAGAACCGTCTACAAAATATATG
GTTCAACGTAGCCTAAAAAGTCATTACGTGTAAATTCAAAGCACATGTACTTGGCAATTTACCAT
CATGCAAATATGAGGATGTTATTACTAAGAAAGTTTGCACTGAAGAGGCAAATGCAGATTAACCA
TCTTCTGACGTTGACCGCATGAGCTTGCCCCTCGCCACCTACTTGACTTACAAACCCGAGTCACT
CAAATCACCCAAAACCCAACCCAGAACTTTCCAGAAATAGTCCAAATTGAACAACAGCCTACATA
CATAACACTACATCTAACAAGAAACAATCAAACCCTATCCACAGA


Right flanking sequence: Indices 2090 -- 2589
TTTTACACGCGCTGGATATGAGACATGATTCCCCACGTCCCCGGCAACAACGCGTTATCCCAAAA
GTCTCCGGTGAGATTGTACATGGCCGCCAACACGTCTTCGTCCGGTGCGCTCCCGAAATCACTCG
GTCCGGGGCTGAGCATCCGTGTTGCTGGAGATGGGGCGACGGTCGTTTGTGCGACGGTTCCGGAC
GGTTGGGAGTTTTGTAGAGGTTGGCCGACGGTGACGTTTGTCGGTCGGCCTAGGATACGTTTCAA
GAACCGAGCGTAGAGCGCTGGGGAATGTCGTTGGTCTACTGCACTTTGTTCTAGGGTAAGGATAA
ATGCGTCGACGAGCGCGAGGGCGGCTTCGCGTTGAGTTTCGGTCATGGTTAAATGAGGCGGTTGG
ACTGCGCGTGGTTTCGCGAGCTAGAGAGAGGTAAGAAAGAGTGAATGTATATGCGTTTAGCTTGC
CTTGATCAAAAACGCCGCAGCTACGAAAATCTCAATAAACCAACC



Found at i:5871 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140267885
    Period size: 5  Copynumber: 7.2  Consensus size: 5

       3792 CCTGTAGCTC

                   *                            *      
       3802 CATCT CGTCT CATCT CATCT CATCT CATCT TATCT C
          1 CATCT CATCT CATCT CATCT CATCT CATCT CATCT C

       3838 TCCTTGTCTC


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   5   27  1.00

ACGTcount: A:0.17, C:0.39, G:0.03, T:0.42


Consensus pattern (5 bp):   
CATCT

Left flanking sequence: Indices 3302 -- 3801
ACCCTCCTCTTCCGACTCACAGCTGGGCATGTCCAGCTGAGGCCACATCTCCACCGCCTCCAACT
TGTTGACTTGCTCAGATGCAAACACTGCATTTGCGAATACAAAACTGTCTCACACTTCCTGCTCA
GGTGCCCACAGTACAAAACAAGAGGCACAAACATCTAGTTGCACAAGGCCCCAACTTCCTCCGTC
TTAGTTACCTTCTCCATGTACCCAGCACCCTTGCACCTCTCTTCAACTTTATGAAGGCCATGGGC
AGCTTCTTGGACCTAGTTGGTTGACAAGTGGTCACTGCCCCTTACTCTGGCCCTGTTTTCTACTC
TCTGTTTCCTCTCTCACTCTCTCACTCTCTCACTCTCTCACTCTCTATCCCTCTCACACATCTAG
ATGTTATGATACCAGCCTCAATTCTAACTGTTTACATTGCCTACTTTCTACCTTGCCACCTATGT
CTTATGTCTAGAATAGTTTAAGACCCCTATGGCCTCCTGTAGCTC


Right flanking sequence: Indices 3838 -- 4337
TCCTTGTCTCCCCCTATCTCTGTTCAGCACCCATCTATACTCCAGTAGTTATGTTGTGCCATAGG
GCTTAGCCTCAGACAGTCGCAGTCTGGGGAGTTCTTGTATGATACACACAACAAGAGCGTACACT
GCAGCACCAGGACACTTGCAGTAGACTCCCTTCCCCCCTGCCATCGTAGTGGTTGCAGTTGTCTT
CAGGGTCACACTGGGTGTAAATACTTGCAGTCCAGGGAGTTCTTGTGTGATACACACAACAAGAG
CGTACGCTGCAGTGCCAGGACATGTGTGGGAGACTCCCTTCCCCCCCTGCCGTTGTAGCAGTTGC
GGTAATCTTCAAGTTCCGCTGCAGGTCAGCAATCGCAGTCTGGGAAGTCCTCATGTGATACACAC
AATGAGAGCGTATGCCGCAGTGCCAGGATGCGTGTGGTAGACTCCCCGCTTGCTTTCTTGCTTTC
ACCTTTGGTCGTCATCATAGTCGTCTTCGAGGCTGGGGGGATCAA



Found at i:4201 original size:138 final size:138

*************Found a new SSR********************
 Sequences: ctg1113140267931
    Period size: 5  Copynumber: 6.0  Consensus size: 5

       6036 TAGACAGCTG

                            *                  
       6046 TTTCT TTTCT TTTCC TTTCT TTTCT TTTCT
          1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT

       6076 ATTGGCATAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   5   23  1.00

ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77


Consensus pattern (5 bp):   
TTTCT

Left flanking sequence: Indices 5546 -- 6045
TCCCCGAGTGGGGTCTGCAATGGGGCGACGCGAGGTGGATGGCGCCTGGTACGTTCCCTTTTACT
TTCTTAAATATTAATTCTAACGGGTTGAGTAGAATTGCACCACCATTTGAATCCCAAAACCAAGT
TCCCGGGTCAACGAACGACACAGAGCGACGTCTATGCGTTTGCGTGTACGGCTCTCGAGGTACGC
TTCATTCATCCGAGTCATTTACAACTACTCACATTGGATGTAGATATGGACATCCGCCGCTCCTT
TTGCTGGTCACCCAGACGCCAACGTTGTTCTCGAAGTCGCCACCAAAGGCCGACACCCACCCCGT
CCCCAAAACACAGTATTTATTTCCAAGTCGAGGTCCGATCAGGTATGGGGCTTGTTGCAAGCATG
TTGGAATTTGAACCCGGGGGTGAGGCCGAGTATCAGGATGATACTTGAAAACTTGACAGTCTTGG
CCGAGTAATTCATGAGGGTCTTGGGTGTTGATTTATAGACAGCTG


Right flanking sequence: Indices 6076 -- 6575
ATTGGCATATGGTCCAAGTTCATAATTTGTAGGATTTGTATGTGCTGTGTTATTTGCATGCTGTA
GCTCTGTTATTGTTCTATGTTTTGTTGTGAAGGAATATATCGATGATATATTGAATGGGTAGTGG
CGTTGCTTTGAGTGGTCCGAGGATCACGTCCCCTTGGATCTCTCGATCGCCCAGTGTTTCGTTTT
CACTGTTTGGAGTGGCGTTTGATCTCAGGGCGTTTACCGTTTGAGGTGGATTTGTGTGCTGCGTC
GGTTGATCACACAGGAACTTGTCTAACATTAACGCGAGTAAGCATCCCGCGCACAAGGCACGGTT
AGCTTTGTCGTATTTTGGAAGGTGTGTATACACATTGTAGACTTGGAACATCCGTCATATGATTT
GACGAAAGCGTCTTATTGACCCCGGGAAAGCAGAAGCAGAAGCGAGGTAATCCCACTGGTAATCA
TACCCTAGGCAATGTTGATCCATGCTTTTCTCTATATTACTATGT



Found at i:7923 original size:21 final size:21

*************Found a new SSR********************
 Sequences: ctg1113140267955
    Period size: 5  Copynumber: 5.0  Consensus size: 5

       2946 CGAGTGGTGC

                                         
       2956 GATTT GATTT GATTT GATTT GATTT
          1 GATTT GATTT GATTT GATTT GATTT

       2981 TAAGGGGGGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60


Consensus pattern (5 bp):   
GATTT

Left flanking sequence: Indices 2456 -- 2955
TGGAACTTGGTCATCAGCTTGTTCCGAATATTCGAAAAAGTCAAGCATCGGGCAGTAGGAGGCAG
TTTGATTGTGTAAGCGGTGCTGGACACGAGTTGGCGCAGGAGGATCCGCTCTTTCCTTTTCTTCC
TTTTTTTTTTTCTTCCATTCCCACATCTCTACTCCATTCTACTCTTCTTGATTGTACGCGTTTCG
GTTTCGGTTTCGTGTGCGGACTATATACGACGTCTGGTATACCCCACAATTCTTGGTGGTGCACG
GTTCTCAACTCTTACTCCCGCGTGCATATACGTTTCTTCCCTTTAGCCTAGTCTTTTTTCTTGTT
CTTGACAAATGTATTTTTCTAGTTGATCTTGAGCACGAGTCCGAGTAAGCTTTCCAACTCGTCGA
TTCTCCTTTCCCTCCCTCCCTCTTTTGTTTTCTTGGTTTTGTGATGTTTGGGACTTTTGTGGGCG
GGCGGGGCTCAGTCGTGAGTGGGGAGAAAAGTAATCGAGTGGTGC


Right flanking sequence: Indices 2981 -- 3480
TAAGGGGGGGGGGCCTTTGATATTCTAGTATGCTAGCATACTCTACCGTGAACCCGATATACACA
ATATATTTGCTTGGTTTTACCCTGCAGTGGGGTCGAATCGTAATTTGAATTTATCTGCAGGTGGG
ACGGATCCCTGCAAACGAGGTTATTTTTCCGCGTTTATTGATAACATCGCACATTGAGCCAACCA
CTGTATGCTCCCGTTTGATCTGGTTAATACTCTGGTCACTATAAACGCGTAAATCACAGTTTGGC
CATGTACACATCGTTTTCTCCGAGTAAAGCGCTGGTGTTGATCCTCGAGTATATACCTCCCGATT
CGCAGGTGGGTCGGGTGCACGTATGAACGAGTGGGAGACGAATGTACAGGGTCGGATACATGGCC
CAATCTATAGAGAGAGAGAATTTGGATACAGGCTGGTCGAGAGGTCACAGATCCGTCCGAGAACC
AACACGGTCATGTGAGGGCGCTGTATGCGTCGCACATCCAACACT



Done.
rsol.ctg.fasta.s5961.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267956

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 13294
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26


Found at i:11678 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140268125
    Period size: 5  Copynumber: 5.6  Consensus size: 5

       2740 TGGGATGACC

                                             
       2750 CGAGA CGAGA CGAGA CGAGA CGAGA CGA
          1 CGAGA CGAGA CGAGA CGAGA CGAGA CGA

       2778 TTCCTGACAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   23  1.00

ACGTcount: A:0.39, C:0.21, G:0.39, T:0.00


Consensus pattern (5 bp):   
CGAGA

Left flanking sequence: Indices 2250 -- 2749
TTTTAATAGCTAGGTTGAAATGAGAGTTACAGTTGGGCTCAAGCATATACTGTATGATTAACCTT
GTCTAACCAAAGATCTTGCCATGCGACAGAGTCATGTTTGCTATGTAAATGAATTACATGAACTA
ACGTAACATGACAATACAATGTATCACGCAGCGACAGGATTATGTATGCAAATTTTGAGGTCAAA
GTATGAAGAACTCCGGGAGGAGTTTATAGATTGAGTGCAGGTGTCGGGCTACTTTTCGTGGCTGA
TGGCCTCACTTGTGTGTTTAAGCGGTAATTTGTCGCCAGAAGAGCAAGGATTTTGCTTATCTATA
ATGGTCCAAGCACTCCGGCACAAACTACAGTCACCCACCATGATGTTACCACCTGGATTTACTAG
GTGAGCTGAAGCAGCCTGATGCACTTTTGTTGTAAATAGTTGAGCCCAGAAAAGCTATTCACGTG
ATGGTGGATGACTAGCGTTAGGGTTAAGTCGAGATTGGGATGACC


Right flanking sequence: Indices 2778 -- 3277
TTCCTGACAGCTTCATCCATAATAATGTGCGCTGCGTGAGACGACCTCGCGCTTCTGTGTCAGGG
GTCATAAGCGCGCGCAAAGTTGGGCAGACAAATAAGCTGTTAGGCAAGAACCTTCCCTGTACTGG
CGCGGTAAATGAACCATTAGTCAACCCATGTTCAAGCGCGCATTTATGTCTGGCAGGATGACATG
CACACGAGAGCGCAACAATATTTCTGAGAATTAGTATCTCCAGGTGCTCACGCATTCGGCGCCGA
ACAAAGCAGGAAAACAATCAAACTCTCAATTTCATGACGCATGTCGTGGATCCCGGTGGCAAGGA
GTCCACCAAATAACTCTACACTCATATATATATATGTATTTACATGGTTTCGAACTGATCCTTGA
GGAGCTTGTGACGGCGTGGAAGGCATTGGAATGCCCCTAGATATGACTCAGCGGGACATATTAAA
TGCTGCGCGCATCATCTTGCCAGGCCGTCTTGATGCGGCTAACCA



Done.
rsol.ctg.fasta.s6131.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268126

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 14052
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26


Found at i:12615 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140268161
    Period size: 5  Copynumber: 7.8  Consensus size: 5

        299 TAGTCAAGGT

                                              *     *     
        309 TTCAA TTC-A TTCAA TTCAA TTCAA TTCAT TTCAT TTCA
          1 TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA TTCAA TTCA

        347 CTACAGACGG


Statistics
Matches: 31,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
   4    4  0.13
   5   27  0.87

ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47


Consensus pattern (5 bp):   
TTCAA

Left flanking sequence: Indices 1 -- 308
ATGTTAGACTTACATACCGGTTGGCTGTATACAGACATTGCGAGGAGTGACATACCATTGGACGT
CGACTCGGGCTAAAAGCGCATACAAGACGCAACGCTCCAGTGAATGATATCAACGCGGACGAGTG
GATGAGTGTATCTGCACATAAGAGATAGCGGTTCTCAGATCACGTACCGGTCAATAAATACGTCG
AATAAAGTCAGAGCTCCATATGCTGCGCAGTGAACGGTTGATCCTCATCAATGAGTAGATTTATC
CTACTTTTAAGTACGAGGCATGGGCAAAATACAATCCCTAGTCAAGGT


Right flanking sequence: Indices 347 -- 846
CTACAGACGGTAGCCAGAATCAAACACTTTCCGAGTCTAATCAATGAAACCAAGAGATTAGCGGC
CAGCAAAGAAAGAGGGGTTAATTGAAGCACTCATACCTTCGTTTCGCCTACTGTTTGGTTTGGAG
CCGGTTCATATCAATGCGCTCGATGAGTAATTTCCCGTTGCGTATCTCATTCTCCCAGAGGGGGA
ACTGTGCGCATGCCAGAAGAACGATGCAATTGCCTTGCTCAACGTGTCTAAAGAGGGGATGGTCC
CATGTGAACTTCGCCCCGTCCAACCATTGGAACCCCGGATTAAGTCGATTTTCGTGGGAGGTCCA
GGTTAAAGGCTTGCCCTCATACTGTTTAATATCGCCTGGCTTCACCTCTTGGCCTTCGGCTGGGC
GACTTGTGAAGATCGCAATCTCAAACCAGCTCCATTGGCCCTTTTCGGGGTTCGAAGCCCAGCCT
TGGTCACGGGACTCAGTTTGAGCCTGAATGGAGAGATTGCGCAGG



Found at i:4817 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140268210
    Period size: 5  Copynumber: 10.8  Consensus size: 5

      16120 TTCGATTAGG

                      *           *                 *  *        *  *   
      16130 TTCAC TTCAA TTCAC TTCAA TTCAC TTCAC TTCAA TACAC TTCAA TACAC
          1 TTCAC TTCAC TTCAC TTCAC TTCAC TTCAC TTCAC TTCAC TTCAC TTCAC

                
      16180 TTCA
          1 TTCA

      16184 ATACACTAGT


Statistics
Matches: 37,  Mismatches: 12, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
   5   37  1.00

ACGTcount: A:0.31, C:0.31, G:0.00, T:0.37


Consensus pattern (5 bp):   
TTCAC

Left flanking sequence: Indices 15630 -- 16129
AGCGCATAAATTATGAGCTGACTAAATGCGCGTGTATGTCGAATTTACCAGTATTCATAACACGA
TGGTACCTTTACAATTCTTTTTTTGAAAAAGGTGATCTCGACCTGGTCCCTGCCGGCTAGGTCCA
TGCCATGACTCTCCGGGCCCCCCAGTATATCTGCCCGCACCACCCTCATCCGCCCTTATGACATT
TACGTTCATCGGATTCATGGCTGTAACTACAATTATTGTATCAGCAAAAGTGGATAGTTGTAAGT
AGAAGATATATGACGCGGATAAGTTAAAGGCAGTGGTCGACTCAGGCTGTAAAGAGCGCGAGGCT
CACAATCGGGACCAAGGCGGGCAAAGAAACCCCGGCGCTAATCTGGTGGCTATGTACGGGTGCTG
GTTCGATATCCCCACGCCTCACGTACAACATCCCTCAAGCGCTGATTCCGATGACACTTGCGAAA
CCAAATAATTTTGGACAGTCACTCATTGTGTTCAATTCGATTAGG


Right flanking sequence: Indices 16184 -- 16683
ATACACTAGTCGTAACATCGCGTGCCGCGGGCACACCGTCCCAACGGCATACCAATCCGTTTATG
CTTTCTCAAACTTCCAGTGGACCTTCTTGTCGCTTGTGGCAGCCTTGACCAGGGTAACCTAAGTC
GTCCACAGTCAGATATTAGTAATCAACTAGGTTGGGTAACATCTGTCTCACCGCGGTGCCAACTT
GGTTGTCGGACAAAGACCAGTACAAATCGGTGTCGTTGTATGGGTTGATCCTGTAGCCCAACACA
TACGGAAGATGAATACGGAGCAACCTCACACAACGTCACTTTCGCGGACTCACGTATACTCGGCC
TTGTTGTTGGTCTCCAGGATGTCCCACTGGATACCGCTCGACTTCACCAAGACATCTTGGCCTGC
AGTGGGGCGGCTGCTCCATGCAGCGTTCTGGTATGCTTTGTTGGTAATGTTGTATTTTCCGTTGC
CTTGCTTGGACAGAATCCACTGTGTACGTTGGATGGTTGAGACAC



Found at i:16145 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140268252
    Period size: 5  Copynumber: 14.8  Consensus size: 5

       3872 TGCTTATCCA

                                                                       
       3882 AGGTT AGGTT AGGTT AGGTT AGGTT AGGTT AGGTT AGGTT AGGTT AGGTT
          1 AGGTT AGGTT AGGTT AGGTT AGGTT AGGTT AGGTT AGGTT AGGTT AGGTT

                                        
       3932 AGGTT AGGTT AGGTT AGGTT AGGT
          1 AGGTT AGGTT AGGTT AGGTT AGGT


Statistics
Matches: 69,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   69  1.00

ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39


Consensus pattern (5 bp):   
AGGTT

Left flanking sequence: Indices 3382 -- 3881
GGCTTGATGGGCTTGATGCTGATGGGCTGAAGTTCAGCCCAGTCTAAACGAACTGCAGCACTTTT
TTTGTTGAAGTCAAGCTTCCCATGGTACTACCCCAGGGTATATATAGGGGGGGACAGATAGCCTT
CAAGTCATCATTCCTCCCCTTCATCCCTGCCTTCCCCTTTCATCACCCCTACCCTTGGCTTGACT
ATGGTGAAGAGCCAAGTCTTGTTTGAGGTTCCCTCTAGGCTAAGCCTATCCTCCATTCTTATCAC
TTCCTCTTTAGGCTATGTCTCTATATGTTTATGTCATTGCTTAGGTAAGTGATTATGTCATTATA
TTTCAAATTACTGACATATTATTTTTTGAAGTTAGATTTCAAATTTTGATTTCAAATTCTGATTT
CCAATAAGTGTTTTTCTTATCTTTATTATCAGATGTTACACTAACTTTGGCCATGACTCTTAGAT
TATGTGTGATGTTGGTCATGTGAGGGGGGTATTTTTGCTTATCCA


Right flanking sequence: None


Done.
rsol.ctg.fasta.s6258.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268253

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 25126
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26


Found at i:10076 original size:24 final size:24

*************Found a new SSR********************
 Sequences: ctg1113140268263
    Period size: 5  Copynumber: 5.4  Consensus size: 5

       3270 AGCGTTGCCG

                                            
       3280 CGAGA CGAGA CGAGA CGAGA CGAGA CG
          1 CGAGA CGAGA CGAGA CGAGA CGAGA CG

       3307 GAACGGAGAC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.37, C:0.22, G:0.41, T:0.00


Consensus pattern (5 bp):   
CGAGA

Left flanking sequence: Indices 2780 -- 3279
ATTCTAATTCGATCGATGCACTCAGCAAATTTCTGGACCATAGGCGCAAGAGACCTTGCCCATGT
CGTTCCAAAAGTCCCCACATGAAGTTCTTTGTTGGCTATGTCGCCTAACATCGCATATTTCGCAT
TTCCCAGTGATAAATAATCAATAGTATCAAGCTGGTCTCGGACGCGAATTGCAGCAGGATTAAGC
TGTGGTGCTCCCTGATCTCGGTGATCTGAAATCACATATAAAAGGACCCAAAAAAACGACCCCAG
ATCGTGGATAAATGTATGGCGAATGGGTTCTTGGGAAGTAGCCCGTAATAGCTTGATCGCCATGA
ACGAGGAAGTGCCCTGGAAAACATCAGTACCTGTTTGGTTGTAGGGTACGGTATAAAATGGAAAA
TCGGTTACATGCGGTATATAAACAGTCGTTTGAAAACAGACGCATGTTTGAATCATGTTTTCAAA
CAGATGATCACGTGAATGCGGGTGTATCACGAACTAGCGTTGCCG


Right flanking sequence: Indices 3307 -- 3806
GAACGGAGACCCTGTCTTGTTAGCCATAAAAAGACGGCATGGCGTGACCAGGCACATGGCTTACG
AGATAGCCTGCTGAGTCATGCCCAGAGGCATTTTGGTGCCCCTAAGATTGCCGCGAACACTCTAA
GGGCCTATTGGAAATAATGTAGATACATGGCACTATGCTAATAATCCTCAGTCGACTCTTCCCCG
GGTGGATTAACAATGTGTGCCATAAAGTCAAGGGATTGGTTGCTATCGTGGCTTACTCGGCGACG
ATGCAATGAATGCTTGAGCATTTGAGGTGCACCATGTGTTCTGGTGAGATGTTATTGCGCTCGCG
AGTACATGTCATTTTGCTGGACGAAAATGCGCGCTGGGAAGATACAGACGACGCCCGAACGGGAG
GAATATTTATTGCTATCTGGTATAGCAATGGGAAAATATCGCGATGAGCCTAACAGTAAGAATAA
TTGTTGAGTAGCGCATTCAACTAGCCAATGCATACAACATACCTT



Found at i:5303 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140268395
    Period size: 5  Copynumber: 7.4  Consensus size: 5

      34548 ATAAGACGTA

                                                        
      34558 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG AT
          1 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG AT

      34595 CAATATTTCA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   32  1.00

ACGTcount: A:0.59, C:0.00, G:0.19, T:0.22


Consensus pattern (5 bp):   
ATAAG

Left flanking sequence: Indices 34058 -- 34557
TGGAAAGACACTGACGTTACGTTTCCCTTGTGGCCTTCGAAAACAGCTCGCTATGGAGGCTTGTA
ATCAAAAATTTTGAGTTCAAAGGGAGAAAAAACGTACTGGAGTACTAGAATTACCCGCAATGTCG
TAAATGTGGACTTTGGTGTAAATGGCAGCCGCCAATAGTCGTTTGCTGTAGAAACAATCATTCAG
CAGATTGAATATATACGAAAAAGGCAGAAAATATACTCTGGCGAAATAGATAACCGGTTCACTTG
CTTTCCGACAATCAGATTCAAGTCAGCTCGCAAAGTAACAACCCACCCCAGATTCACCAGACCTC
TGGATCGTTCGTGAGCAAAGCCCACTCCAAGCTTCCCAAAATCTAATCTCGTGATCGTATGATCC
AGTCACTAGCACAACTTCCGGAGAGTAATTAGATTGGGACATGGTGGCTGGGTGTAGTCATTTAC
AAATGAATTATAGCGGATCACAGAAGACAAGATAGATAAGACGTA


Right flanking sequence: Indices 34595 -- 34796
CAATATTTCAAATTATCTTCCTTGAGTTTTACCTGTCAATCATAAACCACAACCTGCCCTTGTGA
TGACGCTCACCCGAACAACCTCGACTTCGAACAAACGATGCAATTCATCCATTGAAAACAACTCT
TCCTCAGATTTATTTTACAAACGCCCTCGCAAAGATAGCGCGACAGATTCTGCAAGTAACCAAAT
ACCCCTT



Done.
rsol.ctg.fasta.s6403.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268398

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 36268
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25


Found at i:4362 original size:17 final size:17

*************Found a new SSR********************
 Sequences: ctg1113140268476
    Period size: 5  Copynumber: 5.0  Consensus size: 5

       3950 TCCTACTACA

                                         
       3960 TTCAC TTCAC TTCAC TTCAC TTCAC
          1 TTCAC TTCAC TTCAC TTCAC TTCAC

       3985 ACTCACTTAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40


Consensus pattern (5 bp):   
TTCAC

Left flanking sequence: Indices 3460 -- 3959
CAGGTTCCAGAAGTTGAACCACCAAGACAACATCCGCCGGGCCGATTGTGACTCACGTCTTGTGT
ATCGATATGAAGCAAGCTATCAATGTATTGCTACTATCCTGGGTCTTCATTTGATTCATATTTGT
ATTTATTCCCTTCAACTCGTTGTCATATCCACGTTGCCTAAATTAACCTTTCATATCCCCACGTG
CTAATCTAGTCAGTATGACTTCGATGACAGATCTTCCAAGTGGTACCTCTTCCAGTAACTATGTT
TAATCGCTAAGAGCACTTCGTCATTAAGGTGGATATGATCTGCGCAGGCTTGGCACTTTCACCAA
CCGTTACGCGCCACCGGGATTCAGTGCCAAGCCAATCATGACGGGCCGTTCTGAGAGCGTGTTAG
ATCTTTTTGAGGCACATACATCTCGTGTGGTATATAATAAACCGAGTGGGTCCCATCTAGGCCAA
CAAACAGCAAATTTCTTCACATTTCCACTCTTTTCTCCTACTACA


Right flanking sequence: Indices 3985 -- 4484
ACTCACTTATACACAAGCAACATGGTCTCTTTCAAGCTCTCTACCATCATTACCGTTGCCGCTTT
CTTTGCGCAGGGCGTTGTCGCGGCTCCATCGCCGAGCGTAGACGCTACTGGCATTTATGTTAAGC
GTGCTGCTAGCTGCACGTTCCCCGAACCACCCAAGACCTCGAGCCTCACCGCTCCTATGATTGTC
AAGGATACCTTTGACGGTAAGAAAGTGGATATATGCGTGCTCATACACTTGCTAACCCATCTTCA
GGCGACAATGTTCGTTACGACCGAGGAGCGGGTGCATGCTCTGGACAGAAAGAAGGTGGAGACAA
GGATGCCGTTTTCCTGCTCGAAAACGGTGCTACTCTCAAGTAGGTTCTACGTGACTATCATACTT
GCCTGATTTAATCCTTGCCTTTTTAGAAACGTCGTCATCGGTGCCAACCAGGCCGAGGGCGTCCA
CTGCAAGGGATCTTGCAACATCTACAACGTCTGGTTCGAAGACGT



Done.
rsol.ctg.fasta.s648.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140257003

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 2153
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29


Found at i:1967 original size:20 final size:20