*************Found a new SSR******************** Sequences: ctg1113140259806 Period size: 8 Copynumber: 4.2 Consensus size: 8 5374 GGAAGTTGCG 5384 CACTAATT 1 CACTAATT 5392 CACTAATT 1 CACTAATT 5400 CACTAATT 1 CACTAATT 5408 CACTAATT 1 CACTAATT 5416 CA 1 CA 5418 TTCATTTAGG Statistics Matches: 26, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 26 1.00 ACGTcount: A:0.38, C:0.26, G:0.00, T:0.35 Consensus pattern (8 bp): CACTAATT Left flanking sequence: Indices 4884 -- 5383 CCGAATCCGAATCCGAATCCGAATCCGAGTCCGAGTCCAAGTCCGAGTCTGAGTCTGGGTCAGAG TCTGAGTCTGAGTCTGATTCTGATTCCAACTCGGAAATAGATGGCCAAGGGGATGTCACCAACCC TATAGCATGGGCCAAGGCGATTGAGGAGGAACCCAGCCCTGGATCGAAGTTTGACGCACTGAAGG CGCTAATCGTGGGCAACGATGAAAGTGAGGATGACAGCGATGGTGAAGGGAGGTCTGGTGATGGA GCAGCCTTGTTGCAGGGTTAAAGAACTGTGTCCGAAATTGTCCCCTCTTCATCTAAACAATGTGT TTCTTACTAAATATTTCTTTGTGTTGCTGATTCCGAGCACCAATGCCCTAATTCCATTATTTATC GAATCCAAACGTGTGATTGATCTAAATTAATTGATTATAATCAGCAATATACAACGTGTAACAAG CCTAACTAAGCAAGCTAAACCACTAATTGAGCTTTGGAAGTTGCG Right flanking sequence: Indices 5418 -- 5917 TTCATTTAGGTTGGCGCTCACAAGCTACTCCAAGGCATAGTTGGAGCCCCCTAAATTAGGCTAAT TTAGTAATTTATTTTTGCTACCTTCCTAATTTAGGACCGAATTCCTGAATGGCCTAAAAGAGCTG ATTTAGGTCAAATTAGGTTGGAATTTTTTTGCTGATGTTGTCCCACCCTCCGCCCTGCTGTGATC GTCGTCAGGGATGGCCCACCCGCCTGCGAGTGCCGCTCGCGTCCGGGTGCCCCAGACCCTATCCG GTGCGCGCTACGCGCCGGATCGCCCAGACTACCCTGGATCCTGACGACTGCGATTCCACGAAAGA CAGAGCCCCGGAGCCTAAGTTGCTAATATTAATAGCCAAAAAACACATAATCTGCAGTACCTAAA GCAATTTACAGTTTGTAGATACAGTTACGAGTAACCAGACATGTACAAGCACAAGCATACTCACA AGCGTCACTTTTATGTTGCAACTCTCGCAGTGACACAATACAATC Done. rsol.ctg.fasta.s1899.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140259820

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 3272
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27


Found at i:2319 original size:126 final size:126

*************Found a new SSR********************
 Sequences: ctg1113140260922
    Period size: 8  Copynumber: 5.5  Consensus size: 8

       1064 CGAGCGCAAA

                    
       1074 AGCACGCG
          1 AGCACGCG

                * * 
       1082 AGCATGTG
          1 AGCACGCG

                  * 
       1090 AGCACGTG
          1 AGCACGCG

                    
       1098 AGCACGCG
          1 AGCACGCG

                 *  
       1106 AGCACACG
          1 AGCACGCG

                
       1114 AGCA
          1 AGCA

       1118 AAATGAATGC


Statistics
Matches: 31,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
   8   31  1.00

ACGTcount: A:0.30, C:0.30, G:0.34, T:0.07


Consensus pattern (8 bp):   
AGCACGCG

Left flanking sequence: Indices 574 -- 1073
CTCCCTTCCGAACAGCGACACTTGTTCGTTGATGGGTTAGCTAATGCCGCCATGTATGGCGGGAA
CAATGTTGTCGTTCTGGCTAAGAACCTTCTCTCCACCGCTCGCACCCGGTCCGTCATCTCTCCTG
AACCCTTTGAACATGGTATTATACCTAGTATTGCGTTTGGGAGTGCCAAGTCCCAGTCGCTTCGT
CCTCTGGCCATGCCCACTACCCGACCCGACCCTCCCAAATCCGACAAACTCCCCAAACCCGACTT
GCCGATCACCAACACGATCACGGCCAAGACGCTCAAGAGTTACTTGGCTACCGCGTTGCAGATAC
TGGTGCTCGACGTTCGACCCCGAGATCAGGTGGGTTCGCGAAGAATCCCGTTGGATAATGTGGTG
TGTATCGAGCCAATTGTATTGGGCCGTACTCAACAAAATCCTTAGATATCCGGGAGCGCTAGGTA
GCGCATACTGACGGTCCGTAGGCTCGCGGAGCACGCGAGCGCAAA


Right flanking sequence: Indices 1118 -- 1617
AAATGAATGCTCGGGGAGCGCGTTCTCGGGAGCATCATATGGTGCTACCTACTGCTCCCGAGAGC
TAACGCGACTAATCGGGTACCCTCGAGGAGGGTTGCGACCAAGACTATTAGCAACATAAATGTAT
TGTACTCACTTGTATCCAATGACGCTAGTATTTGTCTTGCACCCATGTATTAGGCAGACTGAGTA
CAATATATTCACTTGGCGTACTATACATAAGAGTAAATAGTGGGAAGTGTATTCACCGGGCACCC
GGCTCGCATTTTACTAGCCAACGCTCGCCGGCGCTTGTATTGTTTAACTCACGCAATGGCTCATT
CGATAGCCCTGGTCCACGGCTATCGAACGCGCTATTGTAGGTCTTGGACGGCTCGCTCCTCGAGG
AGATCGTAAGCGTTTTGTGTCCATTTGTGGTTATATTGATACTCACTATAGTCTCTCCACTCCCG
TGCGGATTCCTCAACAACCGGGGCTCCGCCCGCAGCGCGCAGGCG



Done.
rsol.ctg.fasta.s233.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140256081

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1135
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31


Found at i:532 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140262188
    Period size: 8  Copynumber: 5.5  Consensus size: 8

       1900 CGAGCGCAAA

                   *
       1910 AGCACGCA
          1 AGCACGCG

                * * 
       1918 AGCATGTG
          1 AGCACGCG

                    
       1926 AGCACGCG
          1 AGCACGCG

                    
       1934 AGCACGCG
          1 AGCACGCG

                 *  
       1942 AGCACACG
          1 AGCACGCG

                
       1950 AGCA
          1 AGCA

       1954 AAATGAATGC


Statistics
Matches: 30,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
   8   30  1.00

ACGTcount: A:0.32, C:0.32, G:0.32, T:0.05


Consensus pattern (8 bp):   
AGCACGCG

Left flanking sequence: Indices 1410 -- 1909
ACGATTATCCTCAAACGATTCGACTTTACATTCTGCGATGGATCCCGGTAGTGATGAGCTTTACT
TTTGGCAATGCCACAGGTTCCAACAACGTAGTCTACCTCGATTATCGATAGGTTGGGTGGGGGCA
TTTCTAGTAATCTGGTTGGCTTCCAGATCTATCGGGGCTGAAGGCGCAGATGGATTCGACATTAG
GAAGCATCAGCAAAAAACCCTTTTGTCGAACTCTAAATTTAGCCGAATAACACCAGGTACCCTGG
TAATTTCAGCTAAATCGCACTAATCCAGGACAATGTCAGCTCCCCCGCATGATTTAGCTTGTTTT
AGGGATCTCCACACTAAAAGCACTCCAACTCAGCACCATTCACACGTTAGGGCCGGTCAGACCCA
GATTGCCTTAGCACAAACCTCGAGCGCACTCAACAAAATCCTTAGATATCCGGGAGCGCTAGGTA
GCGCATACTGACGGTCCGTAGGCTCGCGGAGCACGCGAGCGCAAA


Right flanking sequence: Indices 1954 -- 2430
AAATGAATGCTCGAGGAGCGCGTTCTCGGGAGCATCATATGGTGCTACCTACTGCTCCCGAGAGC
TAACGCGACTAATCGGGTACCCTCGAGGAGGGTTGCGACCAAGACTATTAGCAACATAAATGTAT
TGTACTCACTTGTATCCAATGACGCTAGTATTTGTCTTGCACCCATGTATTAGGCAGACTGAGTA
CAATATATTCACTTGGCGTACTATACATAAGAGTAAATAGTGGGAAGTGTATTCACCGGGCACCC
GGCTCGCATTCTACTAGCCAACGCTCGCCGGCGCTTGTATTGTTTAACTCACGCAATGGCTCATT
CGATAGCCCTGGTCCACGGCTATCGAACGCGCTATTGTAGGTCTTGTACGGCTCGCTCCTCGAGG
AGATCGTAAGCGTTTTGTGTCCATTTGTGGTTATATTGATACTCACTATAGTCTCCCCACTCCCG
TGCGGATTCCTCAACAACCGGG



Done.
rsol.ctg.fasta.s2851.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140262204

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 4695
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27


Found at i:3801 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140262245
    Period size: 8  Copynumber: 4.8  Consensus size: 8

         51 ACTAGTGGGT

                    
         61 CGAAAGTG
          1 CGAAAGTG

                    
         69 CGAAAGTG
          1 CGAAAGTG

                    
         77 CGAAAGTG
          1 CGAAAGTG

                    
         85 CGAAAGTG
          1 CGAAAGTG

                  
         93 CGAAAG
          1 CGAAAG

         99 GATACAGGCA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   30  1.00

ACGTcount: A:0.39, C:0.13, G:0.37, T:0.11


Consensus pattern (8 bp):   
CGAAAGTG

Left flanking sequence: Indices 1 -- 60
CACGAGCGCGTGAGGCACATTCAAGGCGCAAAAAAGCGAGTACGAGCAAGACTAGTGGGT


Right flanking sequence: Indices 99 -- 598
GATACAGGCAAAACAGACAAGACAGGCAAGTGAGGCGCGGCCGCAGAGGTGCATACGTGGATGCG
GATGCAGGGGCACTAACCATCGCTGTTTGTGTATTCGTTTAAGTTACACGGCCTATCAGGGCAAA
TTAAAGCAGTAAATAACGCTTATAATGTAGACATGCATAAAGCGCGAATCAAAATGAAAATGAAA
AGACGATTCCATTTGGATTCGCGCGTCTGCCAGTAATGTGGTTGCGGCGGCTGAGTATCCAATAC
ATAGTACGTGGGCTGCTACAACCACCGCACGTACAACTGATGTATGATCCCCTCATTATATAGGC
CTGCTTTATGCTCATCGTAATTCTGACTTCCTGCTCGCGCTTGTTCTTTTGTTTGCTTATACTTG
CTCGTGTTTGCTTATCTCATGTTCCCGTGCCGCCCTCACAAGTTCTCAATATCTTGCTTTCGCTT
GCGGGCGCGTCCCACCAATCAGCTCATCCCCGCCCTTATTCTTCG



Done.
rsol.ctg.fasta.s2881.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140262272

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 2690
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23


Found at i:2545 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140262680
    Period size: 8  Copynumber: 8.4  Consensus size: 8

        753 TCTTTCTCCT

                    
        763 CTCCTCTC
          1 CTCCTCTC

                    
        771 CT--TCT-
          1 CTCCTCTC

                    
        776 CTCCTCTC
          1 CTCCTCTC

                    
        784 CTCCTCTC
          1 CTCCTCTC

                    
        792 CTCCTCTC
          1 CTCCTCTC

                    
        800 CTCCTCTC
          1 CTCCTCTC

                    
        808 CTCCTCTC
          1 CTCCTCTC

                    
        816 CTCCTCTC
          1 CTCCTCTC

               
        824 CTC
          1 CTC

        827 TCTGTTTCCC


Statistics
Matches: 53,  Mismatches: 0, Indels: 6
        0.90            0.00        0.10

Matches are distributed among these distances:
   5    2  0.04
   6    3  0.06
   7    3  0.06
   8   45  0.85

ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39


Consensus pattern (8 bp):   
CTCCTCTC

Left flanking sequence: Indices 263 -- 762
GAGTTGGTAACTACACGCCCCTTGAGTAAGGGTTGGCACCGAGAGACGGCAGTAATTCCCGTCAC
TCGAATCTGCATGGCATGCCAGCTAGTCCCGAAGTACCACGAAGTCCCCGAAAGGGACCCAATCT
CATCGAGTGACGACTTACTTGAAACTTTCCCATGATTTTATTTCAATCCATATTCTTCTTACTGT
AGCTGGTCCCACTGGGATGATCATTGGGCTCGACTGGGTGTATTATAATGCATTAATTTTAAATC
AAATCGTACATCCTTTGCAGAGTTGCTGTTTTGACTTCTTACTTGCACACCGGTCCATCAGTTTA
TTTCGTTGAATTATACAGCAGTACTTCCGACCGATTTATTGCAACCATTGGCCAAGAGTGTCAAG
TCCGGTGGCGCTTAGTCCTCGGCACTTACACGTAATCGCCGGCTTATGAATCGGCCCCACCATGA
CTGTCACTTGCATCTGACCGCCACCACCACTGACGTCTTTCTCCT


Right flanking sequence: Indices 827 -- 1326
TCTGTTTCCCGCCCTCCATCCCCCGGTTGCCATCCCACCGCCACCGTCGTCACTGCTGGGCTAAC
TGCCCCTGGACGACTCGACCCACTCACGCACAACGGTAAGTCCAGGTGTTCGTGCTCTAGTTATA
CTAAGGCTTATCTAGCGTGTCGCTAACCTCCGTACTCAGATGGCTGCCTCAAGACCTGACCTTGT
GCCCCTGAGGTCCGAGCCAATGACGTACAGGGGCAAGCAGTTAACAGACACAGGTAAGTGCCCAG
GTATATTCACCTGTCGTTTGTCGCTAATTGCATGATCACACGGGCAGGGCGTGCGCTGAGGCCCC
ACCCAATGGGTAACATGAGTATCGGACTGTTTCGCGCTAAGCACTACTAACAACGTTCTGCAACA
GGCCCCCCAAGGCCCGTGTCGGGTCCTCGAGGCTGCCTGCACCACCTCCATCCCTGTTTGTTGCC
CCGTTGTGATCCCCCGTGTGGCCTTCGTGCGTGGTTCTCTTGTCC



Found at i:779 original size:13 final size:14

*************Found a new SSR********************
 Sequences: ctg1113140263003
    Period size: 8  Copynumber: 4.0  Consensus size: 8

        945 CCAATATACG

                    
        955 GATATTTC
          1 GATATTTC

                    
        963 GATATTTC
          1 GATATTTC

                    
        971 GATATTTC
          1 GATATTTC

                    
        979 GATATTTC
          1 GATATTTC

        987 AAACAAATTA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   24  1.00

ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50


Consensus pattern (8 bp):   
GATATTTC

Left flanking sequence: Indices 455 -- 954
GGATATAGAAAAGTTACAAATACAAGGCCATCCCAGCTTTTTGAGGTTTTGCCTGACATGGGACG
AAGGCGGCATGAGATGGCGAACTATTTCGTACACCAGTTCGGGGGGTAACTCTGGTGGAGACATA
GTAGGGATGCCCAACGTCGAAGATGGGCCTCAAGCATATTTGAAGGAGATGGTGGCATTTCGCAG
CGGAGACGAAACGTACAGTCCACTAAACGTTGTTTGCGCTGGGAGGGCATGCACATTGCTCAATG
TGGGGTAATTCCTGAGAGAGTGAAGCTTATCTTTGGGTGACCGAGGTCCCGGGGTCCATTTAGCC
CAGTATCTAACCACCATTTTAGACGCTCTACGCGAAGCTTGCATATATCGCGTCATTGATCTTCA
AGCGGCAGTTTTGAAGCTAATATCACTCTAAAGGAACTCGACCTGTGGCTTTCTGGGTCTGGGCG
TAATCGTTGATATTGTCACGATAATAGCATGGAAGCCAATATACG


Right flanking sequence: Indices 987 -- 1486
AAACAAATTACCGTGTAAATCGGAACCTTTCTGCCGACTGAACCCTCTTCCGACCACATCCCAAG
TGATCCCAGCTAGGGGTAGGGTTTTTTAGGTCTTTTATCCACGTTATATGCGGCTACTTCACTGA
CTGGGTGTCTGAAACAGGCAGAAATCCCTGCACGGGACGCTACTACTCATATATATCATTTCATA
CTGGATGTCAATGACAGCGATTAACTATAGTACTCATAACTTGTTTGAACGTGGTTACACGTTTG
GGAGGTGATGAGCAGGTAAACTTGACACTGTGACTGCTTTTACCTTTATGACAGCTAGAATCAAG
ATAGACTATGCATCGAAGCTTGCCCTGAATCGGGGAATTTAGGTGTGTTCGTTTATGTTCGATCT
GATGATGCACCATTGCTGGATCGGTATGCTTTGAAACAAATGTCTTCTATCTTGATTCATTATTG
ATGAGTATTAACTCCGGGATTGTTGTTGGGTCGTCCCGATTAGGC



Done.
rsol.ctg.fasta.s3196.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140263004

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1358
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26


Found at i:369 original size:24 final size:24

*************Found a new SSR********************
 Sequences: ctg1113140263091
    Period size: 8  Copynumber: 3.5  Consensus size: 8

        505 GTGATCTGTA

                    
        515 GCCGGACC
          1 GCCGGACC

                    
        523 GCCGGACC
          1 GCCGGACC

                    
        531 GCCGGACC
          1 GCCGGACC

                
        539 GCCG
          1 GCCG

        543 AGCCGCCAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   20  1.00

ACGTcount: A:0.11, C:0.50, G:0.39, T:0.00


Consensus pattern (8 bp):   
GCCGGACC

Left flanking sequence: Indices 15 -- 514
GGTAGGAAGAAAGGCCAGTAGAAGTGGTACAGCCACGTGTTTGACCCGCGAAACCTAGCCAGCTC
AGGGTGTATTTGCAATTCTGTTGGACTGACTGATACGACAGATAAACTTCGCCGCGACCATGACC
ACCTGCACGACAGTAACGACCAACTCAGAGATCCACCGAAGTAAAGCAAACAAAAACCCTCTATG
AAATAGACTCAAAGGCAAGTTTCACGCATTCAATGATCATAATTACACATTGCACCTTATCATCA
GTTGAAACAGCAGGTGCTTACGGGCACAGGGCCAAACCATAAGTGACAAGTGTGCCCACTGCACC
TACTTTATTATGGTTTTCAAGTAAGTAATGTTGATTTTAATCGGTTCATCTAATTTGATTTGGCT
ATCCTGGCTTAAGTTTAGTCAAAATACATGGACCGGATCGCGTTCACATGTACAAGCAATCCGAC
AGCGACAGTCGCTGAATAGGCGCCGGCGATCCGCGGTGATCTGTA


Right flanking sequence: Indices 543 -- 1042
AGCCGCCAAAGGCTACCCCGCGCTGCAGCAAGCAAGTGAGGCAAAGCAAGGCGAGGGATACGAGA
TAGACGAGGTCAGACGAGCGAGACCAGGCGGGAGTGAGCTTGGCGCAAGGGACGTGTTGTGAACT
GGTGCGTAAGCTACTAACCGTTACGAATATGCGGGTTTGCAGGACGCCGGCGCGCGTATTCGCAG
TGTGCCAGACATGTCGAAGGGAGCCGGAGTTATGGAGACGGATAGAGCAAAGTGCATGCGTAAGG
CGGGGAACGAGCGAGATGGAGCGGCGCGCAGCCAGGTGTAGGCAGGGCGTCACAAGGGCAAGCAA
AGCGAGGCGGCGCAGGACGTATTCATGCGAACAGGACGAGTCGCGACAAGGAAGGTCGAGACGAG
CAAGATGAGACGAAACGAAACAAGGCGAGACAAGGCGAGACGAAATGAGACGAGCAAAGGCGCAT
TGCGAGAGTTACTCAAGGCGACGCGTCGAGCAATCAGACAGGCAG


Done.
rsol.ctg.fasta.s3241.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140263118

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1690
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.28


Found at i:561 original size:25 final size:25

*************Found a new SSR********************
 Sequences: ctg1113140263450
    Period size: 8  Copynumber: 5.5  Consensus size: 8

        312 GCATTCATTT

                  * 
        322 TGCTCGTG
          1 TGCTCGCG

                    
        330 TGCTCGCG
          1 TGCTCGCG

                 *  
        338 TGCTCACG
          1 TGCTCGCG

                 * *
        346 TGCTCACA
          1 TGCTCGCG

                    
        354 TGCTCGCG
          1 TGCTCGCG

                
        362 TGCT
          1 TGCT

        366 TTTGCGCTCG


Statistics
Matches: 31,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
   8   31  1.00

ACGTcount: A:0.07, C:0.34, G:0.30, T:0.30


Consensus pattern (8 bp):   
TGCTCGCG

Left flanking sequence: Indices 1 -- 321
ATGAGCCATTGCGTGAGTTAACAATACAAGCGCGGCGAGCGTTGGCTAGTAGAATACGAGCCGGT
GCCCGGTGAATACACTTCCCACTATTTACTCTTATGTATAGTACGCCAAGTGAATATATTGTACT
CAGTCTGCCTAATACATGGGTGCAAGACAAATACTAGCGTCATTGGATACAAGTGAGTACAATAC
ATTTATGTTGCTAATAGTCTTGGACGCAACCCTCCTCGAGGGTACCCGATTAGTCGCGTTAGCTC
TCGGGAGCAGTAGGTAGCACCATATGATGCTCCCGAGAACGCGCTCCCCGAGCATTCATTT


Right flanking sequence: Indices 366 -- 865
TTTGCGCTCGCGTGCTCCGCGAGCCTACGGACCGTCAGTATGCGCTACCTAGCGCTCCCGGATAT
CTAAGGATTTTGTAGAGGACGACCATGCTACCTCGAGGGAACATACCAATAGTCGCCTCTCAGGC
CTCTAACAATACTGTTCACGACCAAGACGCAGCAGCGAGCGTCACTTTCACTCAAATCTCTGACA
TCTCTGACTTTTCTGACCACCCAACCCGTAACCGACGCAACTCTCATGCCGGATCGAGTAGCATT
TACAACTCTCCCGGCCCAATACCACAACATAGACGCAAGGCTAAGTCCAGGTCTAGCTCGGTAGC
CAGCAACCGTACAATCCCTGGCGAATCTCAGGTATTTTCTGACATTGATGCTCTCTCACAAAGTC
GTTCTAGTACTCCTACCAATCCTCGCCCCTTCCCCGTGGGCGAAAGCGAAAACACCCCAACTCGA
CTCCGAATCATGGCCCCACCGCAGGCCCTAGATGAGGAGGAGGCA



Done.
rsol.ctg.fasta.s337.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140256303

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1916
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28


Found at i:917 original size:29 final size:29

*************Found a new SSR********************
 Sequences: ctg1113140263492
    Period size: 8  Copynumber: 4.9  Consensus size: 8

        132 CAGACGGCCG

                    
        142 CTCAACCA
          1 CTCAACCA

                    
        150 CTCAACCA
          1 CTCAACCA

              *     
        158 CTTAACCA
          1 CTCAACCA

                    
        166 CTCAACCA
          1 CTCAACCA

                   
        174 CTCAACC
          1 CTCAACC

        181 CTGACTACTG


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   8   29  1.00

ACGTcount: A:0.36, C:0.49, G:0.00, T:0.15


Consensus pattern (8 bp):   
CTCAACCA

Left flanking sequence: Indices 1 -- 141
AAATTCATAGTAATTTCAACGCATTGAACGAATGTGAGGGACTGATTATCTATTTGAGCACATTG
GTGAGCTGCTGTGACGAACGGATGGACAACAACTGCAAGGCAAAGGCTGCACACTGCATTTACAT
CCAGACGGCCG


Right flanking sequence: Indices 181 -- 680
CTGACTACTGGACAACGCTTTAAATCTTCATCTCGAGTCTTCGCCTGCTCTGATTGAAGCGACAT
ACACCCAACTGTCATCAAGGTCGGCAGACGGGCGCCACCGGCTGAGATTCATCCTCCTAAATTTA
GCACGGATTCGCGTAACGAAAGAAAAGAGGCGATTCAAGTTTTTTTTATAGACTTAGGATTGTAC
TGATTATAACTTAGGTGCCACCCTCCTGTGTCCGAACCTCAAGGCTACGCCATCGCAAGAATGGT
GGTGGAGCACACAAGCCGATTGATATTATTCATAAATTACATCATATGTTTCAGCAAACCGAATA
AGAGCGAAGGCATAATGGGCAAAAATTATCTGGAATCAGGGTGCATGTGAAGTATCATCAACCCA
ACCTAACGATGCATCAGCCTTTGAGGATGTATCTTGGCGTTGAGTCTCTGTTGGCCACTGTTCTG
CCGATGCCACTTGGACAGTGGGTGGAGAGAATGTTGGATGTTCCG



Found at i:3664 original size:46 final size:45

*************Found a new SSR********************
 Sequences: ctg1113140263583
    Period size: 8  Copynumber: 3.2  Consensus size: 8

        332 GTTTTAGCTC

                    
        342 ATTTAGTG
          1 ATTTAGTG

                    
        350 ATTTAGTG
          1 ATTTAGTG

                    
        358 ATTTAGTG
          1 ATTTAGTG

              
        366 AT
          1 AT

        368 CCAACGATCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50


Consensus pattern (8 bp):   
ATTTAGTG

Left flanking sequence: Indices 1 -- 341
CTCTCCCCCCCCCATTATGAGCCAGAGTTTGTGGCGGGTCCAAGGGTCCTTTCACGTGACATAAA
TTATACAAAACCGCTCATTCGGTTCTACTCAGCTCATCTGTCTCGAAAGCTTGCGCGGGCACTAT
AATGGCTTCTCTATGCAGACATCAGCAAAAAACCCCTGCTAAACCCTGGGTGCCCTGGCTAAATT
AGCTGAAACAAGGAAGCAACTTGCCTTTTATTCCATAATTCCGGGCCGTTTCTCGGGCAAGGCCC
TAAATCTGTCACATTTATCTAGCCCTCCGCTTGCTTAGGGGAATTTATTTGGGCGCCCGCCAGAG
GCTGAGGTTTTAGCTC


Right flanking sequence: Indices 368 -- 867
CCAACGATCTAGCGATTTAGCGGATTGTGGCTTAAACGATGGGGGCTGAGTTGGGATTTGAAGCT
GTATTTTGTTACGAGAAGTAATCTACATTGTTTTTGGAGGCATACGAGCAACCAAACTGGGGTAG
AGTGTCAGTGTCAAGCTACCGATCATAATTGAACGTTGAGAGCTGGGAGGGCTCTCGCATCACGC
GGCCCTCGGGACAGCGCCTTCCTGACGCACACACGCGGCACGGGCTTCGCCCGGCGGGGTCCCCC
ATCCTGCAGTGCCTCTACCTCACGATTTTACATCTCGTTTGTATATATACACATGTACCATCCAG
TCTTAGTCATATATTACTCTACATGATCGTCCATCGAATGCACCACATAGGCCTAGTTCTGTAGA
TCCGATATGTTAATACCCGTTCATGAATAATCCACCGTCACTAACTTTGCCCACACCTTGTTCGA
AAACGCCTTGTCCAGGAGGAATTTGGACGCGAGAACCAGCGAGGC


Done.
rsol.ctg.fasta.s3432.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140263601

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 3255
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25


Found at i:2953 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140264200
    Period size: 8  Copynumber: 6.2  Consensus size: 8

       1585 AACAGTAAAT

                     
       1595 GATACATGA
          1 GATACA-GA

            *       
       1604 AATACAGA
          1 GATACAGA

                    
       1612 GATACAGA
          1 GATACAGA

                    
       1620 GATACAGA
          1 GATACAGA

                    
       1628 GATACAGA
          1 GATACAGA

            *   *   
       1636 AATAAAGA
          1 GATACAGA

              
       1644 GA
          1 GA

       1646 GTTATTAGGT


Statistics
Matches: 37,  Mismatches: 5, Indels: 1
        0.86            0.12        0.02

Matches are distributed among these distances:
   8   32  0.86
   9    5  0.14

ACGTcount: A:0.55, C:0.10, G:0.22, T:0.14


Consensus pattern (8 bp):   
GATACAGA

Left flanking sequence: Indices 1095 -- 1594
TTTGGGGCAAAGCCCTATGGTGCGACGTAACTACAGAATATCTAAGTCATGGACGAAAAAAAGGG
GGGCACGGAGCGGGATAACGCAAGTAGCTAAGCTGAACATAGGACAATACTAGCAGGGGATAAAG
ATTAAAACTTGGTATCAAAATAAGCTGTGGGAAGGAAGAGGACACTGGAGTAGGAGAGAGAGAAG
CAAGGGAGAATAAAGCACCGGAAGCGCAGCAGAGAGTACCGAGAGAGATCAACACTATGAAAAGT
AACCCAGGTAAATCTTACCCTGCCCACGGGGGTAAGATTTACCTGCGCTGACTAGGTAAAAATAC
CCCTGGAGGCAGGGTAAAAAAATGTCACCCTTTCGTGCAAAACTGACGTATTTTTTACGGTTTTT
TTGATGTATTTCTTGTCGATTTACCCCATAAATAGACTTAAAGTTACACGTGTAAGGGGGGTAAA
AAAAACAATAAATTCAGGTAGTCCACCTGCATATCAACAGTAAAT


Right flanking sequence: Indices 1646 -- 1948
GTTATTAGGTGACCATTATTTGGTCTTTTGACGTGTACCAGTTGCGACTGCCCCCAGCGTCGGGA
TTTTGACTGTTACCTTGGTGGTCCTCCCGACCCGTATCTTGTTCTATGAATGTGTTAGTGACATA
TAGTGCATGTACTTGTGTACTTACGCCTGACAGTTGGTATCCCGAAGATGCCGAGTACTTAGCCT
CAGCCGGCTAGTCCCGTGCCAGCCTATGAACCCAGACCGGTGAGGTTTGGGGAACCCCCGCAGCT
GCGGAGCAGCGAGGGTGCACCGGAGCACCTAACCGCGAGTATG



Found at i:1626 original size:16 final size:16

*************Found a new SSR********************
 Sequences: ctg1113140265897
    Period size: 8  Copynumber: 3.2  Consensus size: 8

      24899 TCCGGTTGTT

                    
      24909 TGTTACAG
          1 TGTTACAG

                    
      24917 TGTTACAG
          1 TGTTACAG

                    
      24925 TGTTACAG
          1 TGTTACAG

              
      24933 TG
          1 TG

      24935 GCAATGTGAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.23, C:0.12, G:0.27, T:0.38


Consensus pattern (8 bp):   
TGTTACAG

Left flanking sequence: Indices 24409 -- 24908
AGTAGTTGGCCCTAGAATGGCTGGACGGCTGGGTTATCATGGTGCTTATATATACAAGGAATGAA
GCCAATATCTATTAGCACGAAATACCCGTAGTACCTACTCGAGCCACACTCCTGTTCCATTTATG
TCTGAGCATAGCCTTTTGCGGAGCACTCAAGAGTTGTCAAATCTAAACGAGTGAGTCTCGAAATC
CGGCAATTTTTGGGGCCCCGTACGCAGCATATCATATATGCGCTTTTTTGAGCCATTGATTCAAC
AGCTTGAGACAAAACTTAGCACATACACGATTTCAATGATCAAAAACTCCTGCCAAATTTGGAAC
AAACTGGATGAGGAACAACACGCAAGGCTTTTAGCATTAATCAATACCACTAAGATTGGCCAGGT
TAGGTTGTCCCCGCACATGACTCCCTTTCCATCTCATTGATTCTGGTAGCTACACTACATATGTA
CACAATTATTCTCTTGCTCTGAGTCCAAATGTGTTTCCGGTTGTT


Right flanking sequence: Indices 24935 -- 25434
GCAATGTGAAATAATAAGTGATTGAATATTGTGCATGCTACACAAACACGATCGTACCGAAAAGG
ACATGATATGCATGGTTGACCTCTTCGAATGTCTCGTCCTTGATATCTTTCGTATATTTGTACCA
ACCCCGGACGTAGTTTCTCCACATCTCCCGCCTCCCCTCTCTATCCATTATCGCCTTGGCCAAGT
AAACAACATCCGATAGTTGCGCCCCACGTACGGGTCCCTTGGGCATAGTCTCGATTCGTACAATC
TTCTGAACAAGCTGGTAGCGCCAATCCGCAGCATAGACCATGATTTGGTCGGATTCATAGAGCGT
AACGTTTTGAGAGAGAGCCCGTTCATAGAATCCTACATGGGTGTGCTGAGTGTCAATGAAGACGC
TCATGTTATTGTTGAGCCAGAATGGATCGTAGTCTAGACGCCTGGCCACCTCGCGGCCAGCCTCA
CTGACGACGATGTTCGTTTCACGATCAGGCGCCCAAAAGTCAACA


Done.
rsol.ctg.fasta.s4310.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140265916

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 2145
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25


Found at i:1584 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140266562
    Period size: 8  Copynumber: 12.5  Consensus size: 8

       4034 TGAGCATGTA

                    
       4044 AGCACGGG
          1 AGCACGGG

                * **
       4052 AGCATGTA
          1 AGCACGGG

                    
       4060 AGCACGGG
          1 AGCACGGG

                    
       4068 AGCACGGG
          1 AGCACGGG

                    
       4076 AGCACGGG
          1 AGCACGGG

                    
       4084 AGCACGGG
          1 AGCACGGG

                    
       4092 AGCACGGG
          1 AGCACGGG

                    
       4100 AGCACGGG
          1 AGCACGGG

                    
       4108 AGCACGGG
          1 AGCACGGG

                    
       4116 AGCACGGG
          1 AGCACGGG

                    
       4124 AGCACGGG
          1 AGCACGGG

                  * 
       4132 AGCACGCG
          1 AGCACGGG

                
       4140 AGCA
          1 AGCA

       4144 AAATCAATGC


Statistics
Matches: 85,  Mismatches: 7, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   8   85  1.00

ACGTcount: A:0.27, C:0.25, G:0.46, T:0.02


Consensus pattern (8 bp):   
AGCACGGG

Left flanking sequence: Indices 3544 -- 4043
GCTGAGGCGCATCGGCGGAGCACACGACACCCCGACGGTAAAGCGTTCTTCAGCACCAACAGACC
GAACTTCAATAGATTCGCACGTACTAATATGGGCAACAGTGGTCCAGGTAAGTCGAAGTCGAAAT
GCAACAACTGCGGAAAGATCGGCCACTGGGCAGCTGAATGCCGAGGACCAGGTGGAGGCGCATAC
AAACCAGGTCAGCCAAGTAAGTCACACAATGGTAGACCACCGAATCGAAGGTTCAACGCACCAGG
AAAACCTCGAAATGGCAATGCACGTACGCATATAGCCATTAGCGATCCTTCGAATTGTGGTGAGT
ACGCGTTCTCTGGCTTCGATATTAATCATGACTCATTTGGAGGAGTCAGCAGCACCTGGATCGCG
GATACTCAACAAAATCCCTAAATATCCGGGAGCGCTAGGTAGCGCATACTGACGGTCCGTAGGCT
CGCGGAGCACGCGAGCATGCAAGCAAAGAAGTACGTGAGCATGTA


Right flanking sequence: Indices 4144 -- 4500
AAATCAATGCTCGGGGAGCGCGTTCTCGGGAGCATCATATGGCGCTACCTACTGCTCCCGAGAGC
CAACCCGACTAATCGGGTACCCTCAAGGAGGGTCGCGACCAAGAATATTAGCAACGTAAATGTCC
CCATATTTGCGTATCGTTAAGTCAGAATTACATGTCGGAACTCACATGTTCTTCTCCAAACGTCG
AAACACATGGGGCACAGCGCTACTGGGGAAAAATCAAGTCATATTCGTATGCTACGCAATGACAA
AACAAGCACGTGTCCATTACCGTCCCCTTTGCTGGGAGACGTTAAGCGCGACGCAGATTAGCACA
TCGCTGGTCTATACGAGCAAACAACGTCGTCA



Done.
rsol.ctg.fasta.s4570.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266565

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 9889
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26


Found at i:1096 original size:21 final size:21

*************Found a new SSR********************
 Sequences: ctg1113140266653
    Period size: 8  Copynumber: 3.1  Consensus size: 8

       5329 AGATAGGGAA

                    
       5339 TCTGGTGG
          1 TCTGGTGG

                    
       5347 TCTGGTGG
          1 TCTGGTGG

                    
       5355 TCTGGTGG
          1 TCTGGTGG

             
       5363 T
          1 T

       5364 TGGATGCAGG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   17  1.00

ACGTcount: A:0.00, C:0.12, G:0.48, T:0.40


Consensus pattern (8 bp):   
TCTGGTGG

Left flanking sequence: Indices 4839 -- 5338
GCAAGAAAAGCGGAGCTACGACTCAGGGGTACTTGGCTCAACTGGCCCAAAGTATAGATATCAAG
GTTGGACCACAGAGAAGGGGAGGAGAGTACAATTTGGCGCCAGAGGGAGCAAACATGTGACAAGA
CCTCCGGTTGGGCTACTGACATCAAGTTCTGAGCGCTACGACTCCAAGCCGAGTTTTTCGCCTCT
TTATCCTTTTCCACAGGGGTGAACAACCACAAGTAGAGGGCAAGATGGAAGATACGATGGAGTAT
CTCACTAGGGAGAAGATTGATTGGCGGAGGATAGTAGTTCCCGCTTTGAATGTGTTTGAACTGAT
CACGTCTGGATTTCGATTCTAGTCGTAGGTCGTGGCCGACATCCCCCTCCATAATGTTGGCCATT
GTGCGCCGTGAGTAAATCCACCGAAGCACCCGCAGAAAGGCGACGAGAAACGATGCCGATACGAG
TGAAGCAAAAATCTCTGAAGGCTTAACACCACGTAAGATAGGGAA


Right flanking sequence: Indices 5364 -- 5730
TGGATGCAGGTGATGTGCATACGTAAACCTTTGACCCCCACGTGACATATGATGGCCGCTTGGAT
ACTATGACCAAGGTATTCACACCATGAGTACTGCTGCATCACTAGCATACAGTTTCACTGACTGA
CGATCCTTGTAATTACATTGAATCAACTCGCTAAAATTCAACACGTGTTTGATGAAATGTACAAG
AAGTAATATACAGAGTGTTCATATGCAGCAGACTAATACATGAAAGCGATAAAACATTACATAAT
TTGTTTCGGACAAGTCTTTTTTTCAGAGCTAGTCGATATATTTCAACTCCCAAGCGTTCCATAAC
TCCATATCACGCGTGAGCGAACCCATTTGACAGCAGGAAACA


Done.
rsol.ctg.fasta.s4660.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266655

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 4475
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24


Found at i:2617 original size:135 final size:135

*************Found a new SSR********************
 Sequences: ctg1113140266714
    Period size: 8  Copynumber: 3.1  Consensus size: 8

       5038 AAAGCGAGAG

                    
       5048 CCACAACT
          1 CCACAACT

                    
       5056 CCACAACT
          1 CCACAACT

                    
       5064 CCACAACT
          1 CCACAACT

             
       5072 C
          1 C

       5073 AGGCGTTTAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   17  1.00

ACGTcount: A:0.36, C:0.52, G:0.00, T:0.12


Consensus pattern (8 bp):   
CCACAACT

Left flanking sequence: Indices 4548 -- 5047
ACTCATTCATGCCCAGCACATTCTTCCATCCATTTGTGGCGATTGAAGTAGCGTTGACTATGCTA
GCAAATGATTGCACATCTCTCTCGCCCCATAGTTGTGGTACAAACTCGAGTTCTGCGGGAGATGG
AACCACCCAGGACTGTGGCGACCAAGTAAAATACCTTGAAACAATGTTCAACAACAGTCAAGACA
AGCCAAGTATAGCACCTACCAGCTAACTTCGTGCCCTTCGAACTGGGAAATGTTTCCACCGCCTC
CCCACCCCAAACCAGCCTTGAGCGGGGCCAAAGGGGATTGTCGTCGTATAATAGGCAAGTTACGA
CCTTTGACAGGAGGAGATAGGACGATAAACAACCAGAAAGTAGTACACAAATGTGAAATCCGTGC
AAACAACATGTCTAGAATCGTATCGGGATCAAGAGCATTCAAACCGGGGTATACGTATAGATTCG
TGAACGAGAGCGTAAGGAGCCGTCAAGTTTTAGAGAAAGCGAGAG


Right flanking sequence: Indices 5073 -- 5572
AGGCGTTTATATATGCTCCAGGACATGGTGGGTCGTGAATCGAAGTTTGCCGCTCCATTGATTTA
CTAGGCCAAGCCCAATCGACGTCAGACCCACGTAGCACTGGTGGAACAATTGGCAATAAATTGGC
CCCACTCAGGGTATATGCACATGAGTGTAACGACAGTCATCTCGGTACTATGTACACTATCCTAC
TACCAAAAGCACAAACATCACGGAAAGAATAAGGGGACAAACAGGAAGCCGTAATTGTGCAGCAC
CACCGTGTGTCGTTGGTGCTTTAGAGCCAATATACTGCTTGCCAAGGTCATTAATCTTCCCCGAA
GAATCCATAAGTCTAGTATCCTAAAGACTCATAAACGTAGTTCACGGAATACTCAGGAGGCAACT
GTTACCTTGTTTATCGGTGTGTCAGCCATGGCTCCAAACCACGCGTACCGTTCCACCCAGTCCGT
CTTGTCCATATATGTTTGAGTTTCGTCTAAGAACCTAACTATTTG


Done.
rsol.ctg.fasta.s4720.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266715

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 5807
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25


Found at i:2603 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140266727
    Period size: 8  Copynumber: 3.2  Consensus size: 8

       2568 TCAGCTCACC

                    
       2578 GCCACAAA
          1 GCCACAAA

                    
       2586 GCCACAAA
          1 GCCACAAA

                    
       2594 GCCACAAA
          1 GCCACAAA

              
       2602 GC
          1 GC

       2604 TCAGCATCCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.46, C:0.38, G:0.15, T:0.00


Consensus pattern (8 bp):   
GCCACAAA

Left flanking sequence: Indices 2078 -- 2577
ACCCTCGAGTTTATCTGTCTTTACACTCTTTTTTGTGTGCTAGCGCTACCATTCATTCCATGAAC
CAGCGTTGGCTTACTAGTACCCGCTTCGACATCACCTTCTTCAAGCTGCGTTACTTCGTGCGCTA
TGGTGATTTGGAAGCCCTGTCTAAAGTGCTGCGCTGCTACCCGTTGCTGCTGCGGTGTGTAGCTT
GGTCTCGCGTGGATTAAATGACCCTGGTATGCAATATTAATATGGTGAGCTGATGTGCGTGAAAT
CTTGTCCTACCGACCTATGTCCATTACCTTTCCCAGGTCTCAAAGTCTTCTATATAACTCGCCAA
ACCTATTCCGAGGCGAAAATCAAGCCACGATGTTGTCGTCGCTGTTTGTTCAGCTTACGCCCAGG
TATTCGATGCCGCGACGAAAGAAACGATTTGAAAGTCCCTTAAAACTACGGGATTCGTGAGGTCT
CCGCCTGGGAAAGACAAACGTTTTTCCAAGTCAGATCAGCTCACC


Right flanking sequence: Indices 2604 -- 3103
TCAGCATCCATCACGGCACTCTCGATTGACGGGCCCATCTCGTGGATCATCACTACGATGAGCAT
ATACAAAGTACGCCCCTGTTGCTTGTCCACTCTATTGCCAGTGTATCTCAGTTGTTATTTCACAG
CACTTCTTCTACGGAGTGGGTATGGAAGGTTGTGGGGGTTTGGGGTTTTCCTTTATTCTACCCTG
CTTCGTACTAGACCGTTGGCCTTCAATGGAATACTATCGCAGATGAGGCAGAATAGCTGCGTCGT
GCGCTTTGACAATCATGTCCAGGAATTGGAGAATCTGATCGTCGGTAAGACACGAACACGTGAAG
TGACACAACGATAGGCGCACCAACTGATGCCTCTAAGCTCCCAATTCTCTCCGTCTTTATCGGTC
ATTAATGTGTGCAATCTTATCATGAAAGTACTCTCAGAAGCATTCTCGGTATCAGATGAAGTGTA
ACAAGAGCTGTAACGCGGCTTATCCAAAGCTGCAACATGAGCAGT



Found at i:7290 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140266918
    Period size: 8  Copynumber: 3.2  Consensus size: 8

      19861 TCTGCATGTC

                    
      19871 TCGTGTTT
          1 TCGTGTTT

                    
      19879 TCGTGTTT
          1 TCGTGTTT

                    
      19887 TCGTGTTT
          1 TCGTGTTT

              
      19895 TC
          1 TC

      19897 TCAATGACCT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   18  1.00

ACGTcount: A:0.00, C:0.15, G:0.23, T:0.62


Consensus pattern (8 bp):   
TCGTGTTT

Left flanking sequence: Indices 19371 -- 19870
ATTTGTGTGACGTCCCTCGTCCCCGCGCTCGTCCCACATCCCAAGGGTTCAGATTGGTCGGCTGG
TTGGGAGGGAAGAAAGAAAGGGCAACTATGACGGTGTGTTGATCGGGGGCGCCAGAACGGGAAAT
CGGCCGGTCTAGACCACTAGGGAAATGCCCCATCCTATCGAATCAAGCCGTATGGCCGCTGATGT
TTTTTACGAGGGTGGATTATATGCGTGGTGTATGATATGCTATCTGTCTTGGATTGGCCACGGTG
CGATACATATGTCACAGGGGCTACGTTCTTCGGTTTTATTCGCATTCCATCTCTGTCTCGCTTCG
TCATTTTTTGTTGCAGTATCTTATCTCAATTGTATCAGTACTCGTCTCTTGCCTTGTTGTAGTCA
CTACCCCATCTTGTCTCTGGCTATGGAGTTCTGCTGGACGGTTTCTCGCCCATTCCGTTTCATCT
CCCCATCATCTATTCTTCTGATATGCGTATACCCATCTGCATGTC


Right flanking sequence: Indices 19897 -- 20396
TCAATGACCTTGGACTTTTTTTCTTTCTGTCTCACACTTCCTCTGATCCGGTCAGTACGATTGTG
GTGAGAAGAGAGTACAGTGCCTTCCGTACAAATTCCGAGGAAGCGTGGTTCAGGTTCGGGGGCTG
CATTGAGCCCGGCTATGTCTTCTCTATGCGATTTTCGACAAACTCAAAGGGCATAGTTGCCTGCT
AAGGTAGGGGTTGAAATCTTGTATGGACATAAACTCGAACGCGGTCTGGACCAACTAACCCGTGG
CGCCCGCTTTGATCCCCGGTAAGCTTGTGCAGCGTTACCTGATACTATTTTGGTGGGAAGACGCC
ACATGGGTGAGGTGTATGCATGGACATTCTAGACACACATCATGGGTCCGTGTCATTTACTATTT
AAGCCGGCGCTAGAAAGTCAACGGCATTCCCAAGTGTCCCCGTTCTAGGGATACCCCGGGCCGCA
GTTTTCAGCGACTTGTCGCATATCTATGTCACGTACAGATTATTC


Done.
rsol.ctg.fasta.s4924.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266919

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 39377
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26


Found at i:11738 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140256669
    Period size: 8  Copynumber: 5.1  Consensus size: 8

        797 AGGTCAGTCA

                    
        807 GGTAGGTT
          1 GGTAGGTT

                    
        815 GGTAGGTT
          1 GGTAGGTT

                    
        823 GGTAGGTT
          1 GGTAGGTT

                    
        831 GGTAGGTT
          1 GGTAGGTT

                    
        839 GGTAGGTT
          1 GGTAGGTT

             
        847 G
          1 G

        848 ACGAGTGCAC


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   33  1.00

ACGTcount: A:0.12, C:0.00, G:0.51, T:0.37


Consensus pattern (8 bp):   
GGTAGGTT

Left flanking sequence: Indices 307 -- 806
ACACCAACAGCGCTCATTACATGCCAATTGGGCTTATTATGCACTGATAGAGCTTGTTATGCACT
AATAGGGCTCGTTACACGGGTGGGTAAGTGATAATTATCGGCCCGCATATTACCAGTTACTGGTT
ACCAGCGCATACATGATCATTGTGCGAGGGGGCAATCTCTGAATAACTAGAATTCTACTATATGA
ACATACTGAATCATACGAACCTATACAATGTAATGAGTGTGGTAGAGGCATTTGAGTGTCCATGT
GGCTTTTATTCTACTCAGTATTGATGCAGTAGCTGCTATGCCCGACACTCAGTTCCTAATACCAT
CGCGTTGAGCACGTGTGGATGAAATGCATACGGCACATCTGAGATGGAAGCCGGGCCAAATAACC
AGTGAGTGATGACTTGCCCTAATGCAGACCGCCCAAGGTTAGGTTAATAGGGAAAACTAGGTTGA
AAGTTAGGTTTTTATCAAAACCTAGCAGCCAACCTAGGTCAGTCA


Right flanking sequence: Indices 848 -- 1347
ACGAGTGCACTGTAAAGATATAGGAGGGAGAGTCGATTTCATTAATATATGCTAACACATGTAGA
ACAGAACAGGGCTAGGTGTTGTTGCTTGTTTGTTTGTTTGTTTGTTTTTTAAAAAAAAAAGAATA
ACTGTTAATGGGAACGAACCTGTTAAAGATCGCTAGTAGGAATCAGTGCCGAAGGCACGGAAATA
TATGTAATTAAGGAAGAATATAATATATATGGAGGTGGTATTGCTATATAAGAACCTTAAGGGTC
GTAAGCTATATGTATGCAAGATAAATGCGCTTATATGCGCGTTAGTATCAATATATCAGGGTGAT
AGCGAACCTTAACAAGTAATCTTGCGATTACAATGTTGCAGGTGGTTGGTTAGTATATCTACGGT
GCGGATATAGTAAAGCAAAGTCTCTAAAACCTACTGTAATTTATTCAGGAATATTGCTAATTTAT
TTACGGGTGATCGCACTCCCTTTCACACGTTCACACGTCGCTTAT



Done.
rsol.ctg.fasta.s4973.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266968

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 42089
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25


Found at i:9216 original size:135 final size:135

*************Found a new SSR********************
 Sequences: ctg1113140267221
    Period size: 8  Copynumber: 25.2  Consensus size: 8

      15757 ACCTAATAAC

                 *  
      15767 TCTCTTTA
          1 TCTCTGTA

                    
      15775 TCTCTGTA
          1 TCTCTGTA

                    
      15783 TCTCTGTA
          1 TCTCTGTA

                    
      15791 TCTCTGTA
          1 TCTCTGTA

                    
      15799 TCTCTGTA
          1 TCTCTGTA

                    
      15807 TCTCTGTA
          1 TCTCTGTA

                    
      15815 TCTCTGTA
          1 TCTCTGTA

                    
      15823 TCTCTGTA
          1 TCTCTGTA

                    
      15831 TCTCTGTA
          1 TCTCTGTA

                    
      15839 TCTCTGTA
          1 TCTCTGTA

                    
      15847 TCTCTGTA
          1 TCTCTGTA

                    
      15855 TCTCTGTA
          1 TCTCTGTA

                    
      15863 TCTCTGTA
          1 TCTCTGTA

                    
      15871 TCTCTGTA
          1 TCTCTGTA

                    
      15879 TCTCTGTA
          1 TCTCTGTA

                    
      15887 TCTCTGTA
          1 TCTCTGTA

                    
      15895 TCTCTGTA
          1 TCTCTGTA

                    
      15903 TCTCTGTA
          1 TCTCTGTA

                    
      15911 TCTCTGTA
          1 TCTCTGTA

                    
      15919 TCTCTGTA
          1 TCTCTGTA

                    
      15927 TCTCTGTA
          1 TCTCTGTA

                    
      15935 TCTCTGTA
          1 TCTCTGTA

                    
      15943 TCTCTGTA
          1 TCTCTGTA

                    
      15951 TCTCTGTA
          1 TCTCTGTA

             *       
      15959 TTTCATGTA
          1 TCTC-TGTA

              
      15968 TC
          1 TC

      15970 ATTTACTGTT


Statistics
Matches: 191,  Mismatches: 3, Indels: 1
        0.98            0.02        0.01

Matches are distributed among these distances:
   8  186  0.97
   9    5  0.03

ACGTcount: A:0.13, C:0.25, G:0.12, T:0.51


Consensus pattern (8 bp):   
TCTCTGTA

Left flanking sequence: Indices 15267 -- 15766
GCGTCGCACCTCGCACTTGCACCTTGCTTTTTGACGCACCCACTGCCCTGTAAGTCTCTTTCAGA
TCGTATAAATGCGCATATTATTGCCATCTACAGGAATGGGCACTATGTGCCACGCGATTAATTAT
ACAAAGAGACGAAGGCCGAACGCCCTGCAGGTCCCGAGATCTAGTTTGGGCACCCAGCTGCGAGC
CATACTTGCAGTTAGGTGCCTCCGGTGCACCCTCGCTGCTCCGCAGCTGCGGGGGTTCCCCAAAC
CTCACCGGTCTGGGTCTCATAGGCTGGCACTGGACTAGCCTGCAGAGGCTAAGTACTCGGCATCT
TCGGGATACCAACTGTCAGGCGTAAGTACACAAGTACATGCACTACATGTCACTAACACATTCAT
AGAACAAGATACGGGTCGGGAGGACCACCAAGGTAACAGTCAAAATCCCGACGCTGGGGGCAGTC
GCAACTGGTACACGTCAAAAGACCAAATAATGATCACCTAATAAC


Right flanking sequence: Indices 15970 -- 16469
ATTTACTGTTGATATGCAAGTGGACTACCTGAATTTATTGTTTTTTTACCCCCCTTACACATGTA
ACTTTAAGTCTATTTGTGGGGTAAATCGACAAGAAATACATCAAAAAAAACCGTAAAAAATACGT
CAGTTTTGCACGAAAGGGTGACATTTTTTTACCCTGCCTCCAGGGGTATTTTTACCTAGTCAGCG
CAGGTAAATCTTACCCCCGTGGGCAGGGTAAGATTTACCTGGGTTACTTTTCATAGTGGAACGCC
TCGGTCAGTAAAGGAGCTGCTTTGTTTAGCAGTAAAATACTGACCAAGTTGTCTGAAGTATACTC
TTCCCTCCATAAGCTGTATACTTCAATCGACAGCTCCCGTAGCACCAACGACCTAGGAGTCAAAT
CACCCAACACATCCCAGATAGTCTTCCACTCTATATTGCTGCGGGCTGGGTAGTGTGTCCGGAGC
CGAAGCTTCCTGAGGCACGGCAATTCTGAAACCCCCATTTCCAGA



Done.
rsol.ctg.fasta.s5227.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267222

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 41474
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.24


Found at i:10184 original size:14 final size:14

*************Found a new SSR********************
 Sequences: ctg1113140267280
    Period size: 8  Copynumber: 4.4  Consensus size: 8

       1849 GTAGCTAGCT

                     
       1859 AAATATAAA
          1 AAAT-TAAA

                    
       1868 AAATTAAA
          1 AAATTAAA

                    
       1876 AAATTAAA
          1 AAATTAAA

                    
       1884 AAATTAAA
          1 AAATTAAA

               
       1892 AAA
          1 AAA

       1895 GATATATCAC


Statistics
Matches: 27,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   8   23  0.85
   9    4  0.15

ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22


Consensus pattern (8 bp):   
AAATTAAA

Left flanking sequence: Indices 1359 -- 1858
GGGCATCTTACAAGTCTCGATATGAGCGTCTGCGTGAGGTGAATGATCTGGACAAACCAATTGGG
TACAGCTCTCGTGCACTTGCTTTGACTCCCGATGGACACCCAGATTTGTCCGCGAAGCATTTCAG
CCGAGCAATGTCATACTTTCATTACTACGAGCACACGAGCGATCCTATTCACTTGCAAATCTCGT
TGGATTCATTTCATGCAGCCACACAGTCGCTAGCTGGGACACCCCGGATTCGGTTTTATCATGCT
CTTCGATGGGCCAGACTTGCTTCCGAATATCATTTCCTTCGCTACATCGAAGCTTATCAAACTAC
TAGTATGCGCAAAATAACACATTGGGATGGAGGGCGGGATCAAAGAAAATAGAGGCGCGTCGGCG
GGCCGAAGGCGCAACACTGATATGGTAGATCATAAACAACCAATATCAATATTGGATGTTTATGA
TATATCACGTGCCGAGCGGTTTGCCTCGTTCGCATGTAGCTAGCT


Right flanking sequence: Indices 1895 -- 2394
GATATATCACGTGACCGCGTCGCTCGAGTGTCGCTCGGGCCTCCGCCTTTCTCCGCCCAAGTCCC
GTTTCGTGCGCCTCCGCGGGCTCCGGCTCACACACTCACTGAGAAAATTATAACTCACCGCAAGA
CTTGTTACTGTGAATTCCAAGGCTCATGAGATTCATGAACTTGTTTCTCGTAAACGGGCAATGTA
AACTTACCACACTGTGTGCCCGAAAATCCAGCACTCTGAAAATCAATGAAATTTCGTTTTTTTTT
GATTTGGTGTTAGAAACCTTCTCGAGCAAATTTGCGAATTTACCTTATTTGCGAATTATCAGCGA
TTGAGGTCTGTATTCTGCCAGGCAAAGCACTTGATTTCTTAGCATATGATAAGCCCATTTTTTGT
CGCACTACATCTAAACTGAAACCATTATCGACTTCGATAAGATACTGAAAATCATCATGCCATCC
CACAGTGCAATTTTTCTGTGCTATGCATAATATCTAGACTGCTAC


Done.
rsol.ctg.fasta.s5286.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267281

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 4389
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27


Found at i:1798 original size:17 final size:17

*************Found a new SSR********************
 Sequences: ctg1113140267297
    Period size: 8  Copynumber: 5.4  Consensus size: 8

       5295 CAAAGACAGA

                    
       5305 AAAAAAAG
          1 AAAAAAAG

                    
       5313 AAAAAAAG
          1 AAAAAAAG

                     
       5321 AAAAAAAGG
          1 AAAAAAA-G

            **      
       5330 GCAAAAAG
          1 AAAAAAAG

                     
       5338 AAAAAAAAG
          1 -AAAAAAAG

               
       5347 AAA
          1 AAA

       5350 CAGCCAATCG


Statistics
Matches: 31,  Mismatches: 4, Indels: 4
        0.79            0.10        0.10

Matches are distributed among these distances:
   8   19  0.61
   9   12  0.39

ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00


Consensus pattern (8 bp):   
AAAAAAAG

Left flanking sequence: Indices 4805 -- 5304
AAAAGGCGGCTTACGAATGGGTTGAAGCTACCTTGTCGTACTAGATTTCAGGTTGCATACAACCA
CACTTTGGTTTCCGACTGATTACAGTATCCGATAATCACGCGCAAGGCCCCTCGATGGAGCATAA
TCATTGGGTGCAAAGCAGCGCCATGAAGTTTCGATTTGTACATCTTACTTTTGACTGTACTCACA
GCACTCGCGACTATTGTATCATACACTCCTTAATTCATTATTAATTCCTTGGCTATTTTAGCGCG
GCGAGTGAGAGTTGCACAGGACCCGGGACACCACACGAGAGCCAAATGTCCTTTCACTCTGTCGA
CTTGATTACGCACTCGTTCGCGTACGTCTATACACATTTTGTCGTGTACTTCAAGCTTCAAATCT
CACGCATACACCAACTTGCCCTCACACACACACACTCACACACAATTCCATCAAAGCAGAAATCC
CATTCACAACACACAAAACAGGCATCTCCACCCAACAAAGACAGA


Right flanking sequence: Indices 5350 -- 5849
CAGCCAATCGATCGACTGCAAAATAGACTTGCGTAAGGGCATGACGGATAAGTGGCCCGGTCCTA
TAGAAAGAAAAAAAAAAAAGAGGACAGGGTAATAATGACAAATGACGTAGAAACAACGAGCGACA
AGCCAAACGAGATGGATGGTTTCCGCAGAATCAGAATCAGAATCGGTGGGGGCGGGTCCGTAAAC
GAGCAGTCGCCCTAGTGGAAAGCAAAGAGAGACAGGAGACAGGAGAGAGAGAGAGCCATGTACAA
GAACCACACCCAAGGACAGTAACAAATGAATTATGCGGAAAAACACCTCGCCAGGGGGGGTTGGT
TCCGTAAGGCTTGGTAGATAGGTGCGAAATAGAGAGATAAACTCGTGTAAAGCGGGACAGACGAA
ACTCGTAGAGGGCAATAGGCAAATCGTGTAAAGCAGGTAAAAACTCGTGGAGAGGAAAAAAAGTA
GGTAGATCGTCCGTGGTCGAGGTGGCGGTCGAGGGATCAAAGGGG


Done.
rsol.ctg.fasta.s5308.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267303

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 10142
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26


Found at i:9144 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140267473
    Period size: 8  Copynumber: 4.2  Consensus size: 8

       1666 GTCGGTGTAC

                    
       1676 GTGCCTTG
          1 GTGCCTTG

                    
       1684 GTGCCTTG
          1 GTGCCTTG

                    
       1692 GTGCCTTG
          1 GTGCCTTG

                    
       1700 GTGCCTTG
          1 GTGCCTTG

              
       1708 GT
          1 GT

       1710 AAATATCAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   26  1.00

ACGTcount: A:0.00, C:0.24, G:0.38, T:0.38


Consensus pattern (8 bp):   
GTGCCTTG

Left flanking sequence: Indices 1176 -- 1675
AACAGCCGGCAGAACAATGATGGCGGTTACTCCTAATCAGGTAAGTTCCGCTCTCTTGCTGGTCA
GCAGTCCCTTGGAAGCACCGGCTCGCGCCCGACCGACAAAGCCCAGGCTCAGACACTGGTAGATG
GACTTCTCAGTGCGAGGGTGCGCCAAAACACGAACAAATTTGATGTCATGGATAATCTTCCATCA
GGATCGACGCAAATATAGTCATATATTTATGTCTACAGACATGTATCAAAACAACTTCAAGTAGG
ACGTAAGACTAGCCACTTGGTATTTGCTTGTTTTTTTCCAGTCCAACACAACACATTCGATGAGC
CAATGAGACCGATATGCTCGGTTGCCTCCGCATCCACGGAGTCACACGGGGCACAAAGGATTGAG
AAATCTTAAAGCCAGGTTCCTGAGTTATGCGGGTCGGTTATTCACCACCGATAAACGCCCTGAAA
ACGATCGACGACCGGGGGTGATGATGCCGGTAAATGTCGGTGTAC


Right flanking sequence: Indices 1710 -- 2209
AAATATCAAATCTAGATCCATAGCTCATAGGTTTGACTATCCGACGCCGGGTAGTCGGCGCCGAG
AAAGGGCTAGCAAGAGGTTGCAACGAAGATGTCGTGATTCCTCGTGAACGAAGGCGTGATTCTAT
TTCGGCGACCACAGCTAGGGGGCCTTGGTATATGGTAGTGTGGTGTGTGAAGACTCGATCTCATG
CGTCCGCTAGTTCAAACTGGGATATTGATATTTGAGTCCAGTGAAAGTAGCGTGTGGGTTTGACA
TGTATGGAAGGTAGACAATTCGATCTTCGCGTCGCGATGTATGCGCAATCGGATAATGCCTACGT
GGAAGTCGGGTAACTTACGTGACAAAGAACGTGCGTCAATGTATAGGTCTTCAACGCCCCTCGCG
CTCCCGCTACCAGTTTTGAGAAGTGGCCTAGATCATTATGCATACAAAGCGCCTAAGCCGGTTTG
ATGATCAGGGAGGTCGATAGATTCAACACGACCAAATACGACCCT



Done.
rsol.ctg.fasta.s5481.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267476

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 4705
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27


Found at i:3783 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140267612
    Period size: 8  Copynumber: 4.0  Consensus size: 8

      36704 TCACCATCAG

                    
      36714 CACCCACA
          1 CACCCACA

                    
      36722 CACCCACA
          1 CACCCACA

                    
      36730 CACCCACA
          1 CACCCACA

              *     
      36738 CATCCACA
          1 CACCCACA

      36746 GAAAGGCTCA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   8   23  1.00

ACGTcount: A:0.38, C:0.59, G:0.00, T:0.03


Consensus pattern (8 bp):   
CACCCACA

Left flanking sequence: Indices 36214 -- 36713
TTACGGGGAGAGAAAAATCCGGAGCGCTCATTTGGGTTACTGGAGGAAAATCAAAGGCGTGGCTA
TGTACAGTGATCCACGCGATATAAGTACCAGCGATCTGCTCCGGACCGTGTATCCTATTGGTCAA
TCATCAGAATGTTTTCTGACAAACTCCGCCAACTTCTGATACCTGAAATCCATCCATTTAATTTG
AATGCCCCTGCTCGCTTGAAAACACAACATTCACAGAATGAATTGCTCAACACCTCCTGGATAAC
ATGCTAGCCATTTCTTTCTTGTTGCGTTCGTTCCTTTATAGAGATCACATGCAGAAGAGGTCAAC
CCATACGTATACGTCGTTCATGTTTCGATCAGATCACTACAGACGATCGGCAAAAGCATCGTGAT
CTAATCCAAATCGAGTTTAGCTCGCCAAGACCAAGCGATGCAGATTCGTGCGAGCGCTTGTTGAA
TGATTAACTCGGGGCTGTGGTACTTGCGACCACCTTCACCATCAG


Right flanking sequence: Indices 36746 -- 37245
GAAAGGCTCATACTCGAATACTTATCGTCTCGCCCTGACAACGCCCAATATTGCCTCACTGCAAG
GCACCGAGATATGAAAAGTCCGGCCAAGAACACGTATTCTGGATGTGGTCATCCCAAACGGTTCT
CGGGGAATATCACTCCGGAGAGCGAGTCAAGCCCTATGTTGCAAAGTCATAGGGAACTCACCCGT
GGCGTTGTCTTTATTCTGTGCCCGGGGATATGTTAATAAATTTAAACTAATGGATGCTAAACGGT
GAAACCTGAGTGCGTGTGTGACTTGACTTGATAGACGCTCGGGGTTCAAACTCACTTTTCAGCGC
CATCACATGGTGAGTGCGAATGTAGCTCTGGAAATAAAGTATTAAGAAAAGAATATGGCTCATAC
GATATTAAACAAACGTTTGTATCATGGACAACATACCATCGGTTGTGTTCGGCTCACTATTATTT
GTAAGCCGGCCATACATGCCCGGACATCGGATTCTCAACAAATCG



Found at i:37459 original size:2 final size:2

*************Found a new SSR********************
 Sequences: ctg1113140267730
    Period size: 8  Copynumber: 3.6  Consensus size: 8

      24545 AACGTGAAAG

                    
      24555 CGTTGGTA
          1 CGTTGGTA

                    
      24563 CGTTGGTA
          1 CGTTGGTA

                    
      24571 CGTTGGTA
          1 CGTTGGTA

                 
      24579 CGTTG
          1 CGTTG

      24584 TGTAGTGTAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   21  1.00

ACGTcount: A:0.10, C:0.14, G:0.38, T:0.38


Consensus pattern (8 bp):   
CGTTGGTA

Left flanking sequence: Indices 24055 -- 24554
CTGTGATAATTTCTCTTGTAGATGCTCCTTAAAAACAAATGAATAACGTATATTTGTGATCGAGC
AGGGCCTTAAAACAAGTGCCTTGGGCTAGTAGATTGATTCGTCTTCTAAATTTAAAGTGGAGGTC
AATTGCGGAGGGAAATATTCGTGTGCGCTGCTACGCTGCCACAACAGCCTTCTACAAGCATCTTA
TCACGCCTCCAGTACATGGTCATGTGAGCCGTAGCCTGCGGAGGCCACACATTACTCGACCGGGA
GCGGCGACGACGCGGTCACGTGACCACACCCACGCCGTTCCGTTCGTCGACTCCGGGATGGCGTG
TATATCGCGAGGCCTCTCAGTACCTTATGAATTATGTTACCCACCCTCACACCCCATTCACTATG
TCTCACACCCAGTTTTCCTTGGTTGTGACTCACTCCGCTATTCGTATTTTTGACCGCTGGTGGCT
TACAGGATCCACAGTCACATTGGAACGAGTTATCCAACGTGAAAG


Right flanking sequence: Indices 24584 -- 25083
TGTAGTGTAGAGTTGATTTTATTGGTGCTAAATACAATCAAGCCTCAGGCTCGCGATCGGCGAGA
CGTGGGCGCAACCAAATCCAAATAAATCAATAAATCACCGTAAACGAACCAAACCTTCTGTTACT
GGGCTCTGCTTGACCTATTGGTTTAAACTCAGTCCTTTCGGGATTCTCAGCTTCGTCAATCTTAT
GCAGTCATCGGAATGGAATATACTCTTTTCTGAACATGATCATCTATATGGACTAGTAAGCCTTT
GTGCTTCATATTCGAATGTTTAGGATACGAGTACAACTCGGATCGACGGATTGTATCGTGGGTCA
CTAAGCAGCCACGGCGATAACGGTTGATCATGCCAAAACCCATGGAGGAAACGTGCCTTTCCTGT
CGCATCTCTCAAACATCTTTCTTTCGTGTGGAGCTAGGGCGTTTGGAAGAACATATGCATCAAGC
CGGGTGTCTTGACGAGCGCCATGTAACATGATGTAGGAAACGATT


Done.
rsol.ctg.fasta.s5736.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267731

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 43443
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27


Found at i:31424 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140267751
    Period size: 8  Copynumber: 4.6  Consensus size: 8

      12389 GCATTCATTT

                    
      12399 TGCTCGTG
          1 TGCTCGTG

                    
      12407 TGCTCGTG
          1 TGCTCGTG

                    
      12415 TGCTCGTG
          1 TGCTCGTG

                    
      12423 TGCTCGTG
          1 TGCTCGTG

                 
      12431 TGCTC
          1 TGCTC

      12436 CCGTGCTCCC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   29  1.00

ACGTcount: A:0.00, C:0.27, G:0.35, T:0.38


Consensus pattern (8 bp):   
TGCTCGTG

Left flanking sequence: Indices 11899 -- 12398
TAATGGCTCATCACCGCATCGAGCTGCAATTGGAGCAATTTCCCGCGAGCGCCGATCGGTTGGAG
ATTCGCCTCGCCCACCGTCTCCTCGATATCCGCGAACGCACCGCTGAGAGACGCGAACGCAACCT
CACCCTGTTCCTTTTCCGCATCGAGGAGATTCACGCGTAAGTTTTTAACATTGCAGTTGTTATCT
TAGCTTACTTGCTTTGTAGCGGGCGTATGACCTTTTTGGAATACCCATGAGGGTTCTGATCTGAG
TGTATGACTCGAAAATGATTGTATTTAATTGAAATGTACTTGTTACACGGCCAGTGAGATACACA
AGCATGGGGGGCACGACTTGGAAACATTGGCTACAGGGGTGTATAATACATTTTGGTTGTTAATA
ATGTTAGTTGCGACCCTCCTTGAGGGTACCCGATTAGTCGCATTAGCCCTCGGGAGCAGTAGGCA
GCGCCATACGATGCTCCCGAGAACGCGCTCCCCGAGCATTCATTT


Right flanking sequence: Indices 12436 -- 12935
CCGTGCTCCCGTGCTCACATGCTTCTGCGCTCGCGTGCTTGCATGCTCCCGTGCTCCCGTGCTCC
GCGAGCCTACGGACCGTCAGTATGCGCTACCTAGCGCTCCCGGATATTTAGGGATTTTGTTGAGC
AGTCCCTTATGATTGCCGCGCTATGCTAATGCCTACTGTTTAGTCTCCTATCACTCATAGCAGGT
GTCGGTGCAGCTAGGGTGTGGGCTTTTTTTAAATCACAGCGTATTCCTGACAATCAATATTGCAG
GTTTCATTAAGGTACATTCTCGAAACCTCTATGTCTTTACTGAACAAGTTTGACAGAATATCAAG
ATGCTCTAGTAGGCACTGGGCTTGGGATCGCATTCTTGCCTTGTGTAGGTAAGTGTGGTGGTGGT
ATTTTCTAGGCAATATCTCATTCCGATAATTTAGAACCCACATCGGGTAAGTTGCTGATTATATT
TGCCATATGGAGATCATACCCACCAAGTTGCGGTTGAACAATACT



Found at i:12458 original size:24 final size:24

*************Found a new SSR********************
 Sequences: ctg1113140267878
    Period size: 8  Copynumber: 7.4  Consensus size: 8

        417 CTTGTGCGAG

                    
        427 AGAGAGAC
          1 AGAGAGAC

                    
        435 AGAGAGAC
          1 AGAGAGAC

                    
        443 AGAGAGAC
          1 AGAGAGAC

                    
        451 AGAGAGAC
          1 AGAGAGAC

                    
        459 AGAGAGAC
          1 AGAGAGAC

                     
        467 AGAGGAGAC
          1 AGA-GAGAC

                     
        476 AGAGGAGAC
          1 AGA-GAGAC

               
        485 AGA
          1 AGA

        488 CAAGAACAAG


Statistics
Matches: 52,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
   8   35  0.67
   9   17  0.33

ACGTcount: A:0.49, C:0.11, G:0.39, T:0.00


Consensus pattern (8 bp):   
AGAGAGAC

Left flanking sequence: Indices 1 -- 426
ACTACTCTACCATAGTACTACGCTAAATATAGCATTTACTTCTACTAATGGGCGGGAGTTACCAA
AACCAGGGTGGTGCAACCTTTTTATGGGTCGTGTATTACATGCGTAAGCAGTGGACTGTTCCCAG
AAAATCCCCATGGAGCTTCATGCGACAGCTAGTAAAGATATTAAATGTAGGCTGGTCCCTGTTTT
TTTTTTTTTTTTTGAATCCAATTTATTCTACGACGTTTTGGGGCGAAGCCCTATGGTGCGACGTA
ACTACTAGAACGGAGAGCCAACAGAAGGTAAGGAACAGGACAGGACGCGAAGAGGAGAGGAGAGG
TCTAAATGCTGAACATTTGGTAGAACTAGCGTATCAAGAGATGTAGCTACTAAAAACTGATTAAC
TAAGCTTGTGTGGAGTGTAAACTAGGCTTGTGCGAG


Right flanking sequence: Indices 488 -- 987
CAAGAACAAGAGAGAAAGACAAAAACATTAGCGGACGAGGTCCGCGAAACGGCCAGTGGCCTTGA
TGTAATCAAAGAGCGGATCGAGTGCGCTGGGCGCGTGGAGGAGGAAAGGCAGGCGGAGGAAGTCG
ACCCCGCGGGCGACGAGATGCTCCTGACGGAGTGTCGCGTAGTGGGGGCATCTGAGCAGGAAGTG
CGTGACTGATTCAGGCTCAAGGCTGCAGAATTCGCATCTGGGTGAGTCGACCAACTGGAGGCGGT
AGAGGTGTTGTCGCAATTGGACATGTCCTACGGTGAGTCTGAATAGCAGAGTGCATTCGGATCGG
GAGAGCCCTCGGGAGTGGGTGAGGAAGTGTCGCGGTGTGAGATTCGGGTATCTATCTGCGTGCTT
AGCGCCTGCGTTGGTCGAGGTCCAGTGCGTCACCGCCAGTTTCCTGTTTGCGGCCTTGGTAGCTA
GTTTGCGCGTGGTAGGGTTCGTGGCTGGATGATACGTGGCGAGGA


Done.
rsol.ctg.fasta.s5884.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267879

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 4619
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25


Found at i:821 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140267885
    Period size: 8  Copynumber: 4.8  Consensus size: 8

       3625 TCTCTGTTTC

                    
       3635 CTCTCTCA
          1 CTCTCTCA

                    
       3643 CTCTCTCA
          1 CTCTCTCA

                    
       3651 CTCTCTCA
          1 CTCTCTCA

                    
       3659 CTCTCTCA
          1 CTCTCTCA

                  
       3667 CTCTCT
          1 CTCTCT

       3673 ATCCCTCTCA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   30  1.00

ACGTcount: A:0.11, C:0.50, G:0.00, T:0.39


Consensus pattern (8 bp):   
CTCTCTCA

Left flanking sequence: Indices 3135 -- 3634
ATCACACTACTTACTTGTGGCGGTGACAGTTTCGTTGTTGATGGTCAACTCTTCAGTGGAATCAG
ATACTGGCAGAGTGGACATGGGCCTCAAGCATGAGTCCCGACACCCAGACATCTCTCCGCACTAC
TTCCTCACCCATTCCTGTGACCTCCAGATCACAGACCACCCTCCTCTTCCGACTCACAGCTGGGC
ATGTCCAGCTGAGGCCACATCTCCACCGCCTCCAACTTGTTGACTTGCTCAGATGCAAACACTGC
ATTTGCGAATACAAAACTGTCTCACACTTCCTGCTCAGGTGCCCACAGTACAAAACAAGAGGCAC
AAACATCTAGTTGCACAAGGCCCCAACTTCCTCCGTCTTAGTTACCTTCTCCATGTACCCAGCAC
CCTTGCACCTCTCTTCAACTTTATGAAGGCCATGGGCAGCTTCTTGGACCTAGTTGGTTGACAAG
TGGTCACTGCCCCTTACTCTGGCCCTGTTTTCTACTCTCTGTTTC


Right flanking sequence: Indices 3673 -- 4172
ATCCCTCTCACACATCTAGATGTTATGATACCAGCCTCAATTCTAACTGTTTACATTGCCTACTT
TCTACCTTGCCACCTATGTCTTATGTCTAGAATAGTTTAAGACCCCTATGGCCTCCTGTAGCTCC
ATCTCGTCTCATCTCATCTCATCTCATCTTATCTCTCCTTGTCTCCCCCTATCTCTGTTCAGCAC
CCATCTATACTCCAGTAGTTATGTTGTGCCATAGGGCTTAGCCTCAGACAGTCGCAGTCTGGGGA
GTTCTTGTATGATACACACAACAAGAGCGTACACTGCAGCACCAGGACACTTGCAGTAGACTCCC
TTCCCCCCTGCCATCGTAGTGGTTGCAGTTGTCTTCAGGGTCACACTGGGTGTAAATACTTGCAG
TCCAGGGAGTTCTTGTGTGATACACACAACAAGAGCGTACGCTGCAGTGCCAGGACATGTGTGGG
AGACTCCCTTCCCCCCCTGCCGTTGTAGCAGTTGCGGTAATCTTC



Found at i:3817 original size:5 final size:5

*************Found a new SSR********************
 Sequences: ctg1113140267996
    Period size: 8  Copynumber: 3.4  Consensus size: 8

       7253 ATGCAATCAT

                    
       7263 TGTAGATA
          1 TGTAGATA

                    
       7271 TGTAGATA
          1 TGTAGATA

                    
       7279 TGTAGATA
          1 TGTAGATA

               
       7287 TGT
          1 TGT

       7290 GTAAGCATCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   19  1.00

ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41


Consensus pattern (8 bp):   
TGTAGATA

Left flanking sequence: Indices 6763 -- 7262
CTGGCAGACCGAACTTTGGGTGCTCACGAGCCAATACGAGCGGTTACATGGACTACCGGGTCTCT
TTACCGTTGTGGCCCTATCTTTGGAGAATGATGAGTACGGTACCCCCTGCCGTGACGTTGGTGAA
CTCTTAAGAGACCTTCCAAATCTTCGTACTCTCACATTGTGTGACCTCATACTCTCCAAGCCAGT
GCTTTCTAGTATGACAAGGCCGTCGGACTCGACTGGAGGTGATTTCGCACGACTAGAAGTACTCC
GTTTGTACTCGACGCAGGTGGCCGACTACGAGGCGTTCAAGTCCCTGATTTCGAGCCATCCCATA
CGGCGGCTCGAGGTTTGGGGTAGTATAGAGGAGCTCTTTTCACCCACTGTGTCCCCTTCATTCGA
TCAGCTTCGTGAACAGGTGCAGGAGATCCATGTGTATAAAAGGAGTATACACACAATCGGTCATT
AAAGGTTACTTTGTCATTCTTGTACGATATTATGGATGCAATCAT


Right flanking sequence: Indices 7290 -- 7789
GTAAGCATCAGGTTTTGAAGGGGCCATTTTAGAACAGAGGCTTAGCGAAAACGGTTTGCTGCCCG
GAGCGCTTGCGAGCCCTTATGCGCGCTATATTCCATATACTTGTACTCAGCCAAAACCCCTTTTT
GCTATGAGCGCTTGTGAGTGCCTATGTGTTCTCCCTATCCTGAGGAGAAACACACCATATAGGGA
GCGCGGCGGTGTGACCCCTGCGCTCCTGAGAATCCAATTGCGCTCGTTAGAATATGCTTACGAGC
ACTCACAAGATTCATCAGGCTTGTATGAGGCGTGGCTTTTACACTAACAACGGCTGGGCTTTCTA
GTCCCTACTCTACTATCCTATCAGACTCTATTTGCTGTCTTGCATGCATGTATTAGGTAGATACA
TAATAATATATTCATTTGGTGTACGATACATAAGAGGCGGGATCATCGACCGCACCAAACGAATG
TCGGGCGTGTTTTCTCCGCCTTGGAGCAAAAAGAACAAGAGCACG


Done.
rsol.ctg.fasta.s6003.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267998

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 92283
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25


Found at i:33416 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140268054
    Period size: 8  Copynumber: 3.8  Consensus size: 8

       3536 AAAGCGGGTT

                    
       3546 GAAGGAGC
          1 GAAGGAGC

                    
       3554 GAAGGAGC
          1 GAAGGAGC

                 *  
       3562 GAAGGGGC
          1 GAAGGAGC

                  
       3570 GAAGGA
          1 GAAGGA

       3576 AGGGGCGGTA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   8   20  1.00

ACGTcount: A:0.37, C:0.10, G:0.53, T:0.00


Consensus pattern (8 bp):   
GAAGGAGC

Left flanking sequence: Indices 3046 -- 3545
GGCACTTGGTGAGCTGCTTAGTTGCTGTATGCGTGTATCTGGCTCTGATACATCTCTGACAGGAA
CACTCGCAGGCTCATCCGATAATCAGCGCGACTTGCTCGCTTTACCTGGAGTTGTGTATTCAGCC
CCAGGTGGGGTGTCTGAACAAAAGGCTGAAGGCAACTGGTGGAAGACCGGCGAGCAGGAGACGAG
GTCATCCGGGTACTCGGCCTCGAACTTCCTCGAGCTCCCTGTCATCACAAAGCTCGACCTTACTC
CCGCCAATTCCTATACCTCACCCTCACCCTCGGTTTTCACCAACGTCCAAACCTCGGCTGAAGTC
CCTTGGGATACGAGTGCGCCTAGCCACCCACGCAAGTCACTTCCCGCCCGTCCAAGTGGCCCGAG
GTTCAAAACTGCGGCATGGCGGCGCTGCAGAACCAACTAGACGACTCGGAGTTACAAGGGCTGTA
GATGGAGAGCGGGTAGACGAAGAGCGGGTTGAAGGAAAGCGGGTT


Right flanking sequence: Indices 3576 -- 4075
AGGGGCGGTATTTGACTCGCAATTGGGCGTAGGAGACTGAGGAAGGGGACTTGGACAGGCTACTT
GGAGACCGACACGGCGGCGACCACGAGGTGACACATACCTCAGAGCCAGGTACGACCGACCCAGA
TGCTCGATGACTCTAACCACATGTGGTGTTGATCCCTACCACACCCGGGCCAACCGTGCTGCCTC
GCCCTAGCATGGTGGGGGTTGGTGGATGTGATTGCTTCGCTTGTGGGGTGAGCCTGGCGGTATCA
AGGCCTGGTTGCCTGCGCTCTCTTCAGCTTCGTCCAATCACGAGCGGATAATCACCGAATCCCAT
CATCCTACTCTCGTCGTCCCCGCTTGGTCTCCACGTCGCCTGTCCGGATCTCCTACCTCCTTGTT
CCCCTCAGGCCCGCCCTAATCATACCATCCCCACCCCCATTCCTAGTTCCGAGCCTGCCCACACC
CAGCCCTACCCCCTATCTTTTGAAGACCACTGTTTGTCCCCTCTG


Done.
rsol.ctg.fasta.s6060.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268055

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 46558
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26


Found at i:6051 original size:3 final size:3

*************Found a new SSR********************
 Sequences: ctg1113140268103
    Period size: 8  Copynumber: 8.5  Consensus size: 8

       1495 GCATTGATTT

                 *  
       1505 TGCTCGCG
          1 TGCTCCCG

                    
       1513 TGCTCCCG
          1 TGCTCCCG

                    
       1521 TGCTCCCG
          1 TGCTCCCG

                ** *
       1529 TGCTTACA
          1 TGCTCCCG

                    
       1537 TGCTCCCG
          1 TGCTCCCG

                ** *
       1545 TGCTTACA
          1 TGCTCCCG

                    
       1553 TGCTCCCG
          1 TGCTCCCG

             *      
       1561 TACTCCCG
          1 TGCTCCCG

                
       1569 TGCT
          1 TGCT

       1573 TGCATGCTCG


Statistics
Matches: 45,  Mismatches: 15, Indels: 0
        0.75            0.25        0.00

Matches are distributed among these distances:
   8   45  1.00

ACGTcount: A:0.07, C:0.41, G:0.22, T:0.29


Consensus pattern (8 bp):   
TGCTCCCG

Left flanking sequence: Indices 1005 -- 1504
GACAGGAATGGCGTTGGGCCGACTCCGCGCTGTAGCCTTCACCCCCACTCAGGCCACAGCCCTGC
CCCACGCACACCCAAACGCGGCCCCCCCCCCCGCCTTATTCTCGCCCTGTATGCTGCGGTTTGAG
GTGGCCTTGACGACGTTGTTTGCCTCGTATAGACCAGCGATGTGCTAATCTTGCGTCGCGCTTAA
CCGTCCTCCCAGCAAAGGGGACGGTAATTGGACACGTGCTTGTTTTTGTCATTGCGTAGCATACG
AATATGACTTGATTTTTCCCCAGTAGCGCTGTACCCCATGTGTTTCGACGTTTGGAGAAGAACCT
GTGAGTTCCGACATGTAATTCTGACTTAACGATACGCAAATATGGGGACATTTACGTTGCTAATA
TTCTTGGTCGCGACCCTCCTTGAGGGTACCCGATTAGTCGGGTTGGCTCTCGGGAGCAGTAGGTA
GCGCCATACGATGCTCCCGAGAACGCGCTCCCCGAGCATTGATTT


Right flanking sequence: Indices 1573 -- 2072
TGCATGCTCGCGTGCTCCGCGAGCCTACGGACCGTCAGTATGCGCTACCTAGCGCTCCCGGATAT
TTAGGGATTTTGTTGAGAACTGAGTTCATGACCGACTAGTATCAGACTCTGAGTCGGACTCATGA
TCATTTGCACTCTTGTTGGTGCAGGCTGCCTTAGTGTGTCGTTGAGAGGAGTCTGGTGCCTTGTT
CTTGCGTCGCTTTGCCATTGATGCGTAGTCGTTGCAATTTACAGGGTATAAAATCTACTTTATTG
TTTAGTTTCCCGGCACTTGCTCTGAGTTCGCTCGATTAAGCACTAATTGCCAATGCTCAATAGCA
TAATTTCATAACGGGTGGGTGGCTATGCGCAAACTCCCTATTGAAAGCGTTTGTGAACTGTGTGT
TTACAACCGTGTTGGAGGCTAAGACCGTCTCATCAATCGCCGTCTCGCGGTAACGCTCCAGGGAA
CTTAATAAGCCGGCTCCACCGGACAAACTTCCGCTAAACTTCAGG



Done.
rsol.ctg.fasta.s6109.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268104

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 4499
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25


Found at i:141 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140268161
    Period size: 8  Copynumber: 7.6  Consensus size: 8

       8467 CTTTTGGATC

                 *  
       8477 CTTTGGCT
          1 CTTTGTCT

                    
       8485 CTTTGTCT
          1 CTTTGTCT

                    
       8493 CTTT-TCT
          1 CTTTGTCT

                    
       8500 CTTTGTCT
          1 CTTTGTCT

                    
       8508 CTTT-TCT
          1 CTTTGTCT

                 *  
       8515 CTTTGGCT
          1 CTTTGTCT

             *      
       8523 CATT-TCT
          1 CTTTGTCT

                 
       8530 CTTTG
          1 CTTTG

       8535 AAAATCTGCT


Statistics
Matches: 42,  Mismatches: 5, Indels: 6
        0.79            0.09        0.11

Matches are distributed among these distances:
   7   19  0.45
   8   23  0.55

ACGTcount: A:0.02, C:0.26, G:0.12, T:0.60


Consensus pattern (8 bp):   
CTTTGTCT

Left flanking sequence: Indices 7977 -- 8476
GTTCGTACTACCCTTCTCGAATACATCGGAAGCCGAGGTGTCTTCGATTGTAAGTTTCGCCCATA
TATATCATCTTCAATGCTATTTCTGACTGGGCTCAAGGGGTCTGGGGGCTCTTCAGTCTCGACAA
TATACCCTGAAGATTCTGTTAGTCAGCAAATTCCAGTAAATGCGAGTGATGCCAACCAGGTACGA
GGCTTCTGCTAATGCGTGTTTTACCATTCAATTAACAGTACTCATTGGGTGCCCAGAGTGAGAAT
CGGGTGGGTTATTTAGCGCACCTGCAGGGCCCGTTATAAGCCATATATGTATATACGAGGCAATT
TATGTACACAGATTTGAATACAATTATGTATTTTCATTTTCTATCTGTGGCACTGCAAAGAAAAG
CAATGTGCTTTTCATGCTGGAAAAGTGGTAAAAGAGCGACCTAAAATAGTGGCTGAATCAAATAG
AGTTCATGCCTGCGCACACTCTTTGCTCTTCTACTCTTTTGGATC


Right flanking sequence: Indices 8535 -- 8948
AAAATCTGCTCTTATAGGTTCGCTTCTTGCTTATCAAAACTTGCTCTTTTCTCTTTTCTCTTTGC
TCATATTCACCTCTTCGGCTCTTCGGCTCTTTGACTCTTACTCTCTTCACTCTTCAATTTCATAA
CTCTCTAATATTGAGTACTCTCGTATCAATTCTCTTTCGTCTCATTAAAGAGACAGGTAGCTCTA
AACTCTTTTTACTCTTTAAAGAGTAAAAAGAGCAAGTCCTTTCCTCCTGATGTTAAGGACAATGT
GATATACATCATAATTTCTGTCTGATCCTGGGGGTTCCTATATAGGGCTGTGTAGACTTGGCTGA
TTGGGGAAGTATCTCTAGGGTCTACTTTATTTTTTCGCATTTTTTTTAGAATTTTTAGATGGCTG
GTTGTTGAGATATGGCATGTAGAT



Found at i:8503 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140268252
    Period size: 8  Copynumber: 4.5  Consensus size: 8

       3294 GGCTGGGCTG

                    
       3304 GCTGAGTA
          1 GCTGAGTA

                    
       3312 GCTGAGTA
          1 GCTGAGTA

                *   
       3320 GCTGGGTA
          1 GCTGAGTA

                     
       3328 GCTGAGTTA
          1 GCTGAG-TA

                
       3337 GCTG
          1 GCTG

       3341 GGCTGGGGCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
   8   20  0.77
   9    6  0.23

ACGTcount: A:0.19, C:0.14, G:0.41, T:0.27


Consensus pattern (8 bp):   
GCTGAGTA

Left flanking sequence: Indices 2804 -- 3303
CATAAATAGAAACTGCCCTTGCTATGATACAAGACATGCCATATCTCCTGCTCAACAGGTTAGGG
TTAGGTTAAAGTGAGAGAGTACCCAAGACCCAGGAGCATATACTCCAAGGCCCATAAGCCATCCA
ACCCAAAATCGCAAAAATCGCAAAAAATGCGAAAAAAATGCGAAAAAAAGCGCAAGCAAGGGCAG
GAGGGAGAGGCAGATGGGGGAGCCAGAACCAAACAGATCATGTGGAGGGTAAGGAAACAGCCTAC
TTACTTCACCTAGAGGAAACCTGAAGGCAAGACAGGTTTCTTCAAATGAGTCTTCAGTCCTACTG
AGTGTGGTGAGGGAATGATGAGTGGATCTGGTGCTGGCTATCCCATTTTATAGACTGGGAGGCTG
AGGAATCAGCCTGGGAAAGTAGCCACTTGAGATTGGTTGGGCTGGGGCTGGGGCTGAGAGGGCTA
GGGCTGAGAGGGCTAGGGCTGAGAGGGCTAGGGCTGGCTGGGCTG


Right flanking sequence: Indices 3341 -- 3840
GGCTGGGGCTGGCTGGGCTGGCTGGGTAGCTGGGTTTAGTGGGCTTGATGGGCTTGATGCTGATG
GGCTGAAGTTCAGCCCAGTCTAAACGAACTGCAGCACTTTTTTTGTTGAAGTCAAGCTTCCCATG
GTACTACCCCAGGGTATATATAGGGGGGGACAGATAGCCTTCAAGTCATCATTCCTCCCCTTCAT
CCCTGCCTTCCCCTTTCATCACCCCTACCCTTGGCTTGACTATGGTGAAGAGCCAAGTCTTGTTT
GAGGTTCCCTCTAGGCTAAGCCTATCCTCCATTCTTATCACTTCCTCTTTAGGCTATGTCTCTAT
ATGTTTATGTCATTGCTTAGGTAAGTGATTATGTCATTATATTTCAAATTACTGACATATTATTT
TTTGAAGTTAGATTTCAAATTTTGATTTCAAATTCTGATTTCCAATAAGTGTTTTTCTTATCTTT
ATTATCAGATGTTACACTAACTTTGGCCATGACTCTTAGATTATG



Found at i:3334 original size:16 final size:17

*************Found a new SSR********************
 Sequences: ctg1113140268272
    Period size: 8  Copynumber: 4.5  Consensus size: 8

       8576 TGCGGCTCTT

                     
       8586 CCTCCCATC
          1 CCTCCCA-C

                    
       8595 CCTCCCAC
          1 CCTCCCAC

                    
       8603 CCTCCCAC
          1 CCTCCCAC

                    
       8611 CCTCCC-C
          1 CCTCCCAC

                
       8618 CCTC
          1 CCTC

       8622 GTCTAGGCCC


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   7    5  0.19
   8   15  0.56
   9    7  0.26

ACGTcount: A:0.08, C:0.75, G:0.00, T:0.17


Consensus pattern (8 bp):   
CCTCCCAC

Left flanking sequence: Indices 8086 -- 8585
GGATACGGCAACGGAGTCGGAGACCGATGATGAATCCATTCGGACCGCCGACTCGGCTGCTCGTC
TTGCAGCCAAACACATCGTGGCAGGTTGCATAGGCGGCCCCACTCGTCTCGATGACAGGCCTCGT
CCTCCGCAGCGCGGAACGCGCGTGCCTCACCCTACTCGCGACAACACCCCAGCAACCGTCATCGA
CTTCCAACCATCAAACACGTCGTCGCATTTGCTTGGTGATCCCCTTCCTCAGCGTCCCTCCGATT
CACGCTTCCGGCAGGACATCCTGACCTCTAGGCTTGCCGAGAAGCTTGCCGAGTGGTCCTCCCAC
CCACTACAAGGGCCTGCCCATGCTCGTCTTCGCTCCGAAATCATTCTACGTTATCTCGCCGATGC
TTCTTGCAACTCAGATGCTGGCGATCCACAACCCAGCGATGCCGATGGGGTACTTCAGGCTGAAA
TCGATTCGGAAGCCGCTAGCTCGCAGCGTGCAACATGCGGCTCTT


Right flanking sequence: Indices 8622 -- 9121
GTCTAGGCCCCGTACTGCTGTTACTGAGGCAGCTGATACCGACACCGACGTCGATGAGGTACCAG
AAACCGACTTCGGCACGCAATCCAATGGCTCTGGACGTGCCACGCACGGCTCTGCGCGCACCTAC
GCCGGGTCCTGTTCGCACCAGTCTGATTCCTTGCCTAGATCTGCGGCCCTCGTCGACGAGCCCAC
CGATGTCAATAATGCCGTCGAAGAGGTATCTCGACCCAACTCTCCCAGCCTGACACCAGCCGAAG
AAGGAACGAGCGCACAAGTCACAGCTTATGCCAAGCGAACCTGGCCAGTGAGTCTCTACACTATC
ATCCTATGAAAGCCCTAATTGATTGTAATTTTATAGCTTCGTCCTTCCCGCGTTCGCAAACCCAA
ACCCCTGGCGCGCGATGTGTCTGGTATTGATCGACAAGTCTTAACTATGGCGAAAATTCACCTTT
TAGCCTACGCCCTTGTCCATGGTAGATTCCTTCAGTGGGCTTCCG



Found at i:10215 original size:20 final size:20

*************Found a new SSR********************
 Sequences: ctg1113140268453
    Period size: 8  Copynumber: 3.8  Consensus size: 8

       7431 ATGGAACAAA

                     
       7441 GTGGCCTAT
          1 GTGG-CTAT

                    
       7450 GTGGCTAT
          1 GTGGCTAT

                    
       7458 GTGGCTAT
          1 GTGGCTAT

                  
       7466 GTGGCT
          1 GTGGCT

       7472 CAAACCAAAC


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   8   18  0.82
   9    4  0.18

ACGTcount: A:0.10, C:0.16, G:0.39, T:0.35


Consensus pattern (8 bp):   
GTGGCTAT

Left flanking sequence: Indices 6941 -- 7440
CTGCTCCGTGTAATGATAGCCCTCGAGAACAATTCCGAAGCGTATTCTATCCCCTCAGCTTCGAA
TATGTTCTTATTAGGAGGCGATGAGGGGTAAGGTTCGTGCAAGGCCCGAAGTGACGGATCATCTT
GGGGAAGCCCAAGGGAGAATGGGGCTGATAGATATGAGCTAGACCAATGCAAAATGCGAGTCGCT
GGTTTGCTGGGGGAGGATATTTGGCGAGAAACAAGTTCAAGCCCGAGCGGAAGAAGAGGAGTCCT
GGCAAGATTAACGGCCATCTAACAAGAAACAGTATGTTCAGACAGAAGATAGTAAGATGTAGCTG
GCAATTTCGGCATCGATTATTTAGTTCTAGTTAAGCAAGCACCATGATGCTGAACCAGATGAAAG
AGCAGAGCCAAATCCTGCGGAGTCACGTGACTTGTGGGTTTCTTTCTGAATAAACTGGCGAGGAA
AGCGTGTTTTCACGAAGTGAAGCGGTCGGAAGACCATGGAACAAA


Right flanking sequence: Indices 7472 -- 7971
CAAACCAAACAATAAACCGAACTTATCATGTGCTTGATATCTGGGCCCCGGACTCTACGCCACAA
AAAGCGATTATTTGGCACAAAAGTTTAAACCGTACAATATTTGCGGACTAGTTTAAGCCACATAA
ACAAGGTACACAAAATCAAGATTTATTCCCATCATCCTCGCCGTTCGGACCTGCCTGAACGCCCT
TGTCCTCGAACTCCTGAGTCTCATCTTTCCCATCCCGGTCTTCGTTGGTGACGCTCTCCGTTTCC
GTCAAGGCCCGTGGCTTCAGGAACTGGGCATCGTATGGAGGCACATGCGACTTCTCGTCAAACCA
CATCGTCTTCCATTCCGACACTTCAAGCCCAATCAACCTTTTGATCTTCTGCTGTCCAACTTGAT
CGCGTTTCGAGTCTGGTCGCGGTGCAATATACGCCTGCTTGTGACTTTTCTTTCTGAAGAGCATC
ATGCCTAAGGCTTCCCCCCCGTAGCCAGGTTCCTTCATGATAATG


Done.
rsol.ctg.fasta.s6459.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268454

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 22566
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25


Found at i:12943 original size:21 final size:21

*************Found a new SSR********************
 Sequences: ctg1113140257114
    Period size: 8  Copynumber: 5.5  Consensus size: 8

        593 GCATTCATTT

                  * 
        603 TGCTCGTG
          1 TGCTCGCG

                    
        611 TGCTCGCG
          1 TGCTCGCG

                    
        619 TGCTCGCG
          1 TGCTCGCG

                 * *
        627 TGCTCACA
          1 TGCTCGCG

                *   
        635 TGCTTGCG
          1 TGCTCGCG

                
        643 TGCT
          1 TGCT

        647 TTTGCGCTCG


Statistics
Matches: 30,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
   8   30  1.00

ACGTcount: A:0.05, C:0.32, G:0.32, T:0.32


Consensus pattern (8 bp):   
TGCTCGCG

Left flanking sequence: Indices 103 -- 602
CGCCTGCGCGCTGCGGGCGGAGCCCCGGTTGTTGAGGAATCCGCACGGGAGTGGGGAGACTATAG
TGAGTATCAATATAACCACAAATGGACACAAAACGCTTACGATCTCCTCGAGGAGCGAGCCGTCC
AAGACCTACAATAGCGCGTTCGATAGCCGTGGACCAGGGCTATCGAATGAGCCATTGCGTGAGTT
AAACAATACAAGCGCCGGCGAGCGTTGGCTAGTAGAATGCGAGCCGGGTGCCCGGTGAATACACT
TCCCACTATTTACTCTTATGTATAGTACGCCAAGTGAATATATTGTACTCAGTCTGCCTAATACA
TGGGTGCAAGACAAATACTAGCGTCATTGGATACAAGTGAGTACAATACATTTATGTTGCTAATA
GTCTTGGTCGCAACCCTCCTCGAGGGTACCCGATTAGTCGCGTTAGCTCTCGGGAGCAGTAGGTA
GCACCATATGATGCTCCCGAGAACGCGCTCCTCGAGCATTCATTT


Right flanking sequence: Indices 647 -- 1146
TTTGCGCTCGCGTGCTCCGCGAGCCTACGGACCGTCAGTATGCGCTACCTAGCGCTCCCGGGTAT
CTAAGGATTTTGTTGAGAGTGGCAGGGTTGAGGTCCGGTGCGGCACTCGTGAGGTGCAGTCGCGG
GGCTTCATTTACTGGGCAGTGGAACAGCAAGTGGGGCACGGTTTGGACCTGTTCGCCGCAGGTAC
AGGATGACTCTCTAGTGGGCATAAACTTTGGGAAGCGATCATAATACAGTATTCGCCAAAAAAAC
TGTGGCCAGTGATAATCTGTACTAGACGCGATGTGACTTTGCGAGGGTGTGAGCCTCCGGCAAAA
ACTTTGTTGAGAGTTAGGCTGGACGCGTTGGGCAGATAGCGGCGGGTGTGTTCAGAGCGTTTGGC
TTGGTCCCAGATGGTGTGCCATGCCGCCCGAGCCTTCTCTGTGGCGTTGCTCTAAAGCCAGGTAG
CGGTGCTGTGGAATATAGGGTCGGGGTCCTGTTCTGCGCCTTCAT


Done.
rsol.ctg.fasta.s699.2.7.7.80.10.50.500.txt.html
Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140257130

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 3960
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24


Found at i:3207 original size:11 final size:11