rsol.ctg.fasta.s1412.2.7.7.80.10.50.500.txt.html

*************Found a new SSR******************** Sequences: ctg1113140258420 Period size: 9 Copynumber: 5.9 Consensus size: 9 1486 TGGAGACGGC 1496 GAGGAAGAA 1 GAGGAAGAA 1505 GAGGAAGAA 1 GAGGAAGAA 1514 GAGGAAGAA 1 GAGGAAGAA 1523 GAGGAAGAA 1 GAGGAAGAA 1532 GAGGAAGAA 1 GAGGAAGAA 1541 GAGGAAGA 1 GAGGAAGA 1549 GGAAGATGAG Statistics Matches: 44, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 44 1.00 ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00 Consensus pattern (9 bp): GAGGAAGAA Left flanking sequence: Indices 996 -- 1495 ACTTTACGAGAACTCTACGCCACAGTTCTGGCAAGGCGTTCGAATGAAATGCCTTGTTGCGTCCC TCGTCGGCAGGTCGCGGAATATTATTCAGGCTGGGTATTGGGGTGTTGAGTTCCCGGACCTTGAT GTCCAACTGATGGAAATTGAGGGCCTCACTGGTATGTTTTTGGAGAAAGAGAAGTCTTGGCGGAA GGGGTGAGTTCAAGTACGGTTGCACATGGTATACTGACTAATATATCCTCGATAGACAACAAGAC ATCATTTGGGTTCATACCGGCAAATACGCGTACGCCCTTCAAGAGCCGTTACCTCCCTACAAAGC CAGGTGGAATGAGGTACTTACCAGTTGGCAAACAGGCCATAATGGTCGCTCTGCGGCGTTCCGAG CATTGGACAGGACGCAGCCACCACCGTCTTGGTGGGCCGGGAAGCAGGACTGGGAGGCCCTGCAG GCGTACAAGGAGCCTGAGGACGACGAGGATGAAGATGGAGACGGC Right flanking sequence: Indices 1549 -- 2048 GGAAGATGAGAGCGACGATGACGATGACGACGACGATGGCGGCCGCAGCAACCGCAGGAACACTG GCCAGCCTGCTACAAGAAGATCGGCCCGCACTTCCTCATCGACACGTCAGCCTCGAGCTCTAGAT TCGGCCACTTCGGCGAAGGGAAAGGGAAAGGCGAAGGTGACGACGCCCGAAAAGGCTCACGCCGA GGCCTCACGCTCGGCCACACGCTCGGCCACTGTGAGTGCCGGGGCGAGACGGAAACGTGGGTCCA CGGGTGAGGCCAGTGCTCGCAAAAGTGCAAAGCGGCCCGCGAAAAAGGCACGGATTGCCTCACCA CCGGATGACGAAGGCTCGCCCTCGGATGCAGGTCATTCTCGCGTTCAAAATTCCGTTGCAAGCTC TTCGAGGGCGGGGCCATCAGTCCTTGCAACGCGCAGTTTGCCGGCGGCTGTGGCTCGTCAGTCTA CAATTGAGCCCACTCCACGCCAAGACCCCGACAGTCGAAGAGGCT Found at i:1514 original size:3 final size:3 *************Found a new SSR******************** Sequences: ctg1113140258703 Period size: 9 Copynumber: 3.2 Consensus size: 9 1756 CGGTGGGAGC 1766 AGTGGCGGG 1 AGTGGCGGG 1775 AGTGGCGGG 1 AGTGGCGGG 1784 AGTGGCGGG 1 AGTGGCGGG 1793 AG 1 AG 1795 CAGGGGCAGG Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 20 1.00 ACGTcount: A:0.14, C:0.10, G:0.66, T:0.10 Consensus pattern (9 bp): AGTGGCGGG Left flanking sequence: Indices 1266 -- 1765 CAGGGCAAAAATTTTAAATGGTCAGATAATATAAGTTGTGTTCTTAGGCCGGCAACACATCAAAA GCGACCAAGGATTTCTATTATTGACCGTTAGAAGTTTACCATCATTTACGCCGCGGATTCCTGAT CACATAAAGAAGCGCCATTTTCGTAACGGACTAAAGAATTAGATCATTGAAAAAATTACAATACA TCTCATTGAAAAGACACAAAGACATTCTCTCGGCGGTTTTACTTCGCCGCTGATACCCCGGAACT GCGAGACTCGAGTTCGGTGATCAAATGAAACCGCGCAGGAGGTAAGGCAGTCCCTGTGGAGGTGC CAAGGACAGCTGGCTTGGGCGGAGAAGGCGCAGCCGCAGGGGCAGGGGCAGGGGCAGCGACAGTG GCAACGACAGCGGCAGCGACAGCGGCAGGGGCAGGGGCAGCGACAGCGGCAGGGGCAGGGGCAGT GGCGGGAGCAGTGGCGGGAGCAACGGTGGGAGCAACGGTGGGAGC Right flanking sequence: Indices 1795 -- 1919 CAGGGGCAGGGACAGGAGTGGGGGGCGCAGACAGGGCCCTACCAATCTGTCCAGAAGTCGGCTGG GCGCGCTCCTTTAGGGCCAGAGTGTTTGACCCCGATTGCTCTACGGCACGACCGCAACCG Done. rsol.ctg.fasta.s1412.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140258714

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 10727
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26


Found at i:2455 original size:79 final size:79

*************Found a new SSR********************
 Sequences: ctg1113140259020
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       1291 TGGGAGGTTT

                     
       1301 CCAGAGACA
          1 CCAGAGACA

                     
       1310 CCAGAGACA
          1 CCAGAGACA

                   
       1319 CCAGAGA
          1 CCAGAGA

       1326 GGGGGGACCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.44, C:0.32, G:0.24, T:0.00


Consensus pattern (9 bp):   
CCAGAGACA

Left flanking sequence: Indices 801 -- 1300
ACATTCCAAGGTATGGTCCCCCACTTCAACCCTGGTGTTTCATTCACCGGGCCAATTTAGCTAGC
ACATAGATAGGGGCAAGACCACGACTTTAAAACGTCTGCAACGTTTCTATCGACTTTTGGCAGAA
TGGCTATCTATGTTATACCTCAGTACATGCAAGCTTAATCCAACTCACGATACTTACAGGCCCAC
GTGCACTCAATAAGCCGAACAGGCTCCCTCTTCTGAACAGGTTCTCCATCTTTTGTTTGGCTACC
AAAAAGATGGCTGTGAATGCTTGGACGTACTTCACAACATGTGCTTTGAGGCGTCAGTGGGAACA
GAGGATCGAGGTTACCTAGTTTGAGTTTCAATTGGCAGTACATTGGTCGATACATGTCATGACCC
TTGACTCAACGGGGTAAATCTGTTCCTCGATTCTGGTACATTCAGTTGACCAATACCGGTAGCCA
ACGCCTAGGTTCATCTGCAAAGAATAGTTCTGCTCTGGGAGGTTT


Right flanking sequence: Indices 1326 -- 1374
GGGGGGACCTTCTCTGCAATGTTCCCAGAGACGAATCAGGGTCTAGTAT


Done.

rsol.ctg.fasta.s1555.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140259022

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 2090
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.30


Found at i:645 original size:85 final size:84

*************Found a new SSR********************
 Sequences: ctg1113140259694
    Period size: 9  Copynumber: 3.2  Consensus size: 9

       1352 CTCGCCGTCG

                     
       1362 TCGTCTTCA
          1 TCGTCTTCA

                     
       1371 TCGTCTTCA
          1 TCGTCTTCA

                     
       1380 TCGTCTTCA
          1 TCGTCTTCA

              
       1389 TC
          1 TC

       1391 ATCATCCTCG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.10, C:0.34, G:0.10, T:0.45


Consensus pattern (9 bp):   
TCGTCTTCA

Left flanking sequence: Indices 862 -- 1361
TAATTACTGCGCTATTAGTCGTATTACCCATGTCATTATGCATATCCTCACAGACGTTACATATG
CCAATTCCGACATAATGCACACTATAAACACCATTATCACACATCAGGTTCGCTGTACGACATGC
ATTGGATTGCATTAGCATGTAGAAACACGTGGGAATGGACAGTCATTACATCGTGAAAGGGAATC
GTTAGCATCATAAAAATTTGTAAGAATGGCGCGCAGAAAGAGCAAGGGAACGCAATACCAGTTGG
GGGGGAAAGGGAATCGTGCTACGTCCAGGGGCGTACTAATCATCGTCTGCATCAACAGACTGCAT
AGTAGTATCACCATCATAGGAGGCTAGGACGGCGCCGGTGGTGCCATCGCCATCGCCATCGCTAG
AAGAGCCATCGTCAGAGCTAGCAGACAAGCTCTCGGGGGCAGGAAAGAATGGCCGAGACTTCAGT
GCAGCAACATCGTTGTTTGCATCGCTAGTAACTTCCTCGCCGTCG


Right flanking sequence: Indices 1391 -- 1890
ATCATCCTCGTCGTCGTCCCCATCGTCACTGCCTTTGCCATTGCCTGTATCCTCGGTCTCAGTGG
GGTCTGCATCTTGTGTATTCTCTCCTTCCATTTCTACGTCCGCCTCCGACTCAACTTCAGACCCA
AGCCCGCCGTCGGCTGCTTCCACCTGCGTGCCTCCTTCCAGGACTTGCAACTCGGATCCAGATTC
GCTACCGTCACCCATATTGGCACGTAGAACTGAGGTACGTTGCTCCTTCGTCAAGAGAACCCCTG
CACGCCCGGCTTCGACTTCCGAATCTGAACTCCCATCACCGGTTGCAGCTAAAACGTCCTGGTAG
AACGATGTGCCCATCCCATCCCATGGCTCAGGAGACTGGGAGGGCGGCTGGTTGCTGTCTAGGAG
CAGAAGGCGGAGGAGTCTGGCTTTCTCAGGCTTGCTGAGGTTCATTACAATACCCATCATTGTTG
CATCACGGCCCGAGGGAGCAAGCACCGCTTCAGTGGGGGGGATAA


Done.

rsol.ctg.fasta.s1854.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140259695

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 7015
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28


Found at i:6735 original size:16 final size:16

*************Found a new SSR********************
 Sequences: ctg1113140259885
    Period size: 9  Copynumber: 2.9  Consensus size: 9

        711 AGTGGATTCA

                     
        721 CGTGGATCG
          1 CGTGGATCG

                     
        730 CGTGGATCG
          1 CGTGGATCG

                    
        739 CGTGGATC
          1 CGTGGATC

        747 AACAACCCAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.12, C:0.23, G:0.42, T:0.23


Consensus pattern (9 bp):   
CGTGGATCG

Left flanking sequence: Indices 221 -- 720
ACTAGCATTGCGGAGAAGATGCGTGCCGAGAACGAAAGGCGGCTTCAACTCAGTATCACGGGTCC
ATGGCCAGATTATCGACAGCGTGATGTGTGTATTCTTTCCTTCTTGGTCCGATTGATGCTCACTG
ATATGCACTTGTCCAGTGGTTTCCAATCACAGGGGCGGGCTTTGCTTGCCATCTTATACCACTTG
GCATTGCCAATCCAGAAGCAGATTCTATTTACCGACGTAGGGATATGGATGACCCAGATGCACCC
CCCCGGGCCACGCAACAGTTCGATCCACCATCATATGAAGGCTTTCCTACGTTGCGCTTGCATGT
CCACCCTTATGCTTTGATCGTGAACGCGCAACCAAAACTCGAGATCTATTTGCAGACCTGGGAAC
TACCAGCTCCTGCTAACAGCAGCTACGACAACATCAAGTATATTTATGATATATTGACAAAGTCA
GCCCAGCAAGTTCGGGCATTGACTTCCCGGCAACGAGTGGATTCA


Right flanking sequence: Indices 747 -- 1246
AACAACCCATCCCGCCAGTGCCCGCTATCATCTTCGTTCACGTGAGCAATCCCAGAGCGCCAGCC
AGACCACACACTCGCATCCAGGCTCTGCTCTGCAAGACAACTACGATGACTCGGTTGATAGTCTG
GACAGTAACCCGGATGGACCCCAAGATAGCTTGGGTATGAATTCACACAACTCGTTCTCTGACTT
AACCTCCGACCATCGCGATCTGCTCGAGTCCAAGGCCCATTGTTCCTCTTCCCTTCACCCCTCGT
CTATGGTTTTGGAACAAAAGGGCGTAACAGAGTGGGTTGCTAGTGTTGAGTATGCACGTGGACAG
AATGTTCTAGTTGAACCCCAGGACGACTCATCGCCTGAGACCTCAAATACACCACAGAACCAGCT
CGCACTTCTCCCACATTGGACTGGCATGGCTGGGAATCTGCGTTTGCTCCTTGGACAATCCCTTT
ACCGGAGTACAAGGAACGGGGTGTACTCTCAAGCAATGACTGGGT


Done.

rsol.ctg.fasta.s1931.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140259893

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1129
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24


Found at i:669 original size:60 final size:59

*************Found a new SSR********************
 Sequences: ctg1113140259924
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        939 GGGTCTTCCT

                     
        949 GGGGATGGC
          1 GGGGATGGC

                     
        958 GGGGATGGC
          1 GGGGATGGC

                   
        967 GGGGATG
          1 GGGGATG

        974 TCTCAATGTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.12, C:0.08, G:0.68, T:0.12


Consensus pattern (9 bp):   
GGGGATGGC

Left flanking sequence: Indices 449 -- 948
GTGGGCTGTGGTGGCATCTCGTGGCAACGACTCATTCGGATTGCACAGGTTTCCTGCTGGCATCG
AACATATCATATGCTGGGATTATCAGAACAGGTCTCGAAGCTGTGCCACCAGCTATGATGCGGAT
GGGAGTATGATTTCAAGAGAGGTTCAGGCATCTTACTCGAAACACAGAGATGTCTGCTCTAACAT
ATAATCAATCCAAGATATGCATTTCCGGGGATTATTTCAACGGCAATATGCTGTGGCGGGTAAGC
GCTAGCTGCCTCCTAGGCCTCCCATATCTCAAGTTGAATAATCTTGCTATCTCGTAGTACTGTAC
CAAACACATCATATACTACGAAGAAGATCGGATTCCTAAATGGGATGATCACGAGCCGGTCTGGA
CACACAAACTTAACTCATCCACTAGCGACGTTCAAGGTGGCCTTTCGTTGGAGGCGACGAGGCCG
TTTGGGATGTACGTGCATGAGCTTCGAAAGTATCAGGGTCTTCCT


Right flanking sequence: Indices 974 -- 1468
TCTCAATGTTGGTCTGGAAGTCATATCGTAGTATGAACAAACGTCCTTAGTTTTGTACACACTGG
CATAGGCATGCATGTTTTGTGAATTGGCTATTTCATTTGAACTTGGTGTGATTCCAAGGCCGAAT
GAATGTTTCCCTTTGAGCACCTAAACTAAGGTAATGCACTCGTCACCGAACAAGCTATATATGAT
TGTGCTATCCCACGCGTATGCTCTGTGGAGGCACTCAAATTACCTGTATCAGCATCATCCAATAG
TCGAATATATTTGGCGGAGGGCCATGACGCGCGGTCAACTTGAAGGTTCAACCATACGCATATAT
ATTCAAGCACAGTTCAACATACAGCGCCACAAAACAAGGTGCCACTGGACATTCCATTACACAGG
AATCACGCCTCGTCTACATTCACAAGCATTGCAACTCTCGTGCGAGACGTTTGCAGCTGCCCCGA
TAGAAAGGTAACAGCGAAATGGCAAACACACTGGACAGCA


Done.

rsol.ctg.fasta.s1944.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140259929

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 3369
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23


Found at i:2344 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140259943
    Period size: 9  Copynumber: 3.6  Consensus size: 9

       2292 TCTTCCCCAA

                     
       2302 GTCCATATT
          1 GTCCATATT

                  *  
       2311 GTCCATGTT
          1 GTCCATATT

                     
       2320 GTCCATATT
          1 GTCCATATT

                 
       2329 GTCCA
          1 GTCCA

       2334 AGAGCTCTTG


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.19, C:0.25, G:0.16, T:0.41


Consensus pattern (9 bp):   
GTCCATATT

Left flanking sequence: Indices 1802 -- 2301
TGCAAGCGTCTCGATATCATATAAGATGCCTTCGCAGTTCCCATTCTGGCAAGTAGCTTCAGCTG
CGTCGGCAATATAGTCGGGATCGTACGAGCATCCACAGAGTGGACAGAGCGTGTAAGTTGTAATT
ATATCGCTTGAGTCCAAGCCAAGTCGTCGCTCGACAGTACGAATTGTGAGAGCCATTCGCACAAG
GTCTTCGGCAGGGACATTGGGATTCGAGCGGAGTTGTCGTTGGGAGGCCTTCAGTTGGCTAGTCA
ATGCACGATGATTAGCACCATATAGAACCTTCTGAACGATAGCGTCCACATATGCGTTGCGTATC
AGGGGATGCTCCCGGAACGCTGCGCAATACTCGGCAGGATCGACCTCATTGTTAGGATCGGGCTC
CTCATCCGGGTCAGGCTGGTTGTTCCATGGCAACTGAAATGGTAGCCCCTCTTGCTCAGGGGGAT
CGTCATGCATACCCATCTCTTCATCGCTCCTATCCTCTTCCCCAA


Right flanking sequence: Indices 2334 -- 2396
AGAGCTCTTGGTCCACCCGATATTGGCATACGTTGGTTGGGCCCACGTTATCAAAGCGATACT


Done.

rsol.ctg.fasta.s1950.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140259952

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 21634
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25


Found at i:7545 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140260341
    Period size: 9  Copynumber: 3.8  Consensus size: 9

       6864 ACATCACTGT

                     
       6874 TGGTGGCGA
          1 TGGTGGCGA

                     
       6883 TGGTGGCGA
          1 TGGTGGCGA

                  *  
       6892 TGGTGGTGA
          1 TGGTGGCGA

                   
       6901 TGGTGGC
          1 TGGTGGC

       6908 AACAAAGGTG


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   9   23  1.00

ACGTcount: A:0.09, C:0.09, G:0.56, T:0.26


Consensus pattern (9 bp):   
TGGTGGCGA

Left flanking sequence: Indices 6374 -- 6873
TCTACATCCAAGCAACCGAGTACGTAGATCTGCACTGATCGACCATGGCTTCGAACTTCTCATAC
TGATGTTTATCGCTATTTCACAGGCAGCAAATTCACCGCCCCGAAAAACCTCGAAACCGTCGCTG
CAAACAAGGCATTCACCGTCAAAATGGCCGTCAAGAACATGGAGATGGGTAACTTTGTCAACCCC
CAGACCAACTACTTTGCGGCTCCTCAACAACTGAACGGCCAAGGCGTCATCGTTGCCCACTCGCA
TATCGTCATTGAGCAGATCGACTCGCTCACTTCCACCAAGGTCTCGGACCCCAACAAGTTTGCGT
TCTTCCAGGGTTTGAATGCTGCGGCCGAGGGCGGTGTGGTTAGCGCGACCGTGACCAACGGCTTG
CCTGCTGGAACCTACAAGATTTCGTCCATCAATACTAGCGCGAACCACGCACCTATTGTAGGCCC
TGTTGCTCAGCATGGCTCGTTTGACGATGTCATTTACATCACTGT


Right flanking sequence: Indices 6908 -- 7407
AACAAAGGTGGCAACAAGGGTGGCAAGGGTGGCAAGGGCGGCAACGGGAAACGCAGCAAGATCGT
ACGCAGGTTTGCTCCTTCGCGCGAAAGCAAGGCTCGCCTATAGATGTGTTTGTTCTGTCATCGTT
ACTCCTTGAGTTGTACTATCTAGGGACCGGAGCCCTGTAATTCGTTGATGCTGCCCTTTTTTATA
TCTTTCTACGTCTATGCCATTTGGCAGTTACGATCGTTGTAAAATTATCGATTTTCATTCACTTG
ACTTATGACTGAAAATAAGGCGAAAGCGGGCGCGGCACGTGACAGATTTGAAAGTCATTGAGCTT
GACGTGAGAGGTCTAATACCAACCATCCTCTATAGTGGATGGCCCAGTCGCTGCTTGGGGTCGAA
ACTGCATATTCGTGGGGATCATCGCCGGCCTGGAACGAATCTAATCCTAACCGACAAGCATTATT
TGTACCGCCACTTTCTGGACCCATATTATCACCCTCAATGATGAG



Found at i:6917 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140260341
    Period size: 9  Copynumber: 3.3  Consensus size: 9

       6912 AAGGTGGCAA

                     
       6922 CAAGGGTGG
          1 CAAGGGTGG

                     
       6931 CAAGGGTGG
          1 CAAGGGTGG

                  *  
       6940 CAAGGGCGG
          1 CAAGGGTGG

               
       6949 CAA
          1 CAA

       6952 CGGGAAACGC


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.27, C:0.17, G:0.50, T:0.07


Consensus pattern (9 bp):   
CAAGGGTGG

Left flanking sequence: Indices 6422 -- 6921
CTTCGAACTTCTCATACTGATGTTTATCGCTATTTCACAGGCAGCAAATTCACCGCCCCGAAAAA
CCTCGAAACCGTCGCTGCAAACAAGGCATTCACCGTCAAAATGGCCGTCAAGAACATGGAGATGG
GTAACTTTGTCAACCCCCAGACCAACTACTTTGCGGCTCCTCAACAACTGAACGGCCAAGGCGTC
ATCGTTGCCCACTCGCATATCGTCATTGAGCAGATCGACTCGCTCACTTCCACCAAGGTCTCGGA
CCCCAACAAGTTTGCGTTCTTCCAGGGTTTGAATGCTGCGGCCGAGGGCGGTGTGGTTAGCGCGA
CCGTGACCAACGGCTTGCCTGCTGGAACCTACAAGATTTCGTCCATCAATACTAGCGCGAACCAC
GCACCTATTGTAGGCCCTGTTGCTCAGCATGGCTCGTTTGACGATGTCATTTACATCACTGTTGG
TGGCGATGGTGGCGATGGTGGTGATGGTGGCAACAAAGGTGGCAA


Right flanking sequence: Indices 6952 -- 7451
CGGGAAACGCAGCAAGATCGTACGCAGGTTTGCTCCTTCGCGCGAAAGCAAGGCTCGCCTATAGA
TGTGTTTGTTCTGTCATCGTTACTCCTTGAGTTGTACTATCTAGGGACCGGAGCCCTGTAATTCG
TTGATGCTGCCCTTTTTTATATCTTTCTACGTCTATGCCATTTGGCAGTTACGATCGTTGTAAAA
TTATCGATTTTCATTCACTTGACTTATGACTGAAAATAAGGCGAAAGCGGGCGCGGCACGTGACA
GATTTGAAAGTCATTGAGCTTGACGTGAGAGGTCTAATACCAACCATCCTCTATAGTGGATGGCC
CAGTCGCTGCTTGGGGTCGAAACTGCATATTCGTGGGGATCATCGCCGGCCTGGAACGAATCTAA
TCCTAACCGACAAGCATTATTTGTACCGCCACTTTCTGGACCCATATTATCACCCTCAATGATGA
GTAGACCTGTTTCAACTACGACTAGCATACCTGGTTTTTCTCCAT


Done.

rsol.ctg.fasta.s2119.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140260356

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1624
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23


Found at i:690 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140260357
    Period size: 9  Copynumber: 4.9  Consensus size: 9

       1061 TCCGCCTGCT

                     
       1071 CCTGCCGCA
          1 CCTGCCGCA

                     
       1080 CCTGCCGCA
          1 CCTGCCGCA

                     
       1089 CCTGCCGCA
          1 CCTGCCGCA

                    *
       1098 CCTGCCGCC
          1 CCTGCCGCA

                    
       1107 CCTGCCGC
          1 CCTGCCGC

       1115 CCTTGCTGCC


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   9   34  1.00

ACGTcount: A:0.07, C:0.59, G:0.23, T:0.11


Consensus pattern (9 bp):   
CCTGCCGCA

Left flanking sequence: Indices 571 -- 1070
TAATGGCGGTAGAAATACCCATTCCTGCTTTGTTATCCAAGTCCAAGTCTGGTCCCAAGACAAGG
TCGCCCTGTGCTGGTATGTGTATAAGTACGGTGCATCTTCCCCTGCTCATAGATAAGATGACATA
GCAAAACTAGTGAGAGTGTGGCAGTCAACCGGGGGCAAGCCAGCCGACGCGAGCGATGCAGGACC
TCGCAATCTCTGTCGGTGCGTCTCTGATATCCGAATTTGACAAGGATCCAAGCAAATGATGATTG
ACATAGATGAGTCGGCTGGCCAGCCGCAAACCTACGGGAGTGATATGAGTCAGCTCCGAGGATGA
CGCTCCAACGTCACCACCAGCACTCGCTTCTGCTCCTCCAGCTCCACCTACCCTTTCTTCTGGGC
CTCTTCCAGCAAGCTTGCCAGCCACTGTCGCACTTGCACCTCCTACCTCTGTCCACCCTCCTCCC
GCTGCACCGACCCCCCCTCCGCTAGCTCCGCTAGCTCCGCCTGCT


Right flanking sequence: Indices 1115 -- 1581
CCTTGCTGCCCTTGCTGCCCCTGCGCTTGCCCCTGCTGCCCCTGCGCTTGTCCTCACCCCTGCTC
CTGCTGCTCCTGCTGCACCTGCTGCTTCTCCTGCTTCTCCTGCTGCTCCTGCTGCTCCTGCTGCT
CCTGCTGCTCCTGCTGCTCCTGCAGCTCCAGCTCCTGTTGCCCCTGCTCCCGCGGACCCTGATGC
TCCTGCTGCCCTTACTGTCCCTGCTCTTGCCGCTCCTGCTACTTCTACTGCTCCAGCTCCCGTCG
CCCCTACTCCCGCCGACCCTGATGCTCCCGTTGTCCCTGCTGTCCCTGTCCCCGCTGCTCCAGCC
GCTCCAGCCGCTCCAGCTCCTGTCACCCCTGCTCTCGCCGACCCTGCTGCCCGTGCCACCCCTGC
TGTCGCGCCCAGCACTACCGTGCAGCCCGTCCATCCCCCGCCGGCGGTTTCTTCGGTACAATCGG
TCGATGATCTCG



Found at i:1145 original size:21 final size:21

*************Found a new SSR********************
 Sequences: ctg1113140260357
    Period size: 9  Copynumber: 10.8  Consensus size: 9

       1164 GTCCTCACCC

                     
       1174 CTGCTCCTG
          1 CTGCTCCTG

                     
       1183 CTGCTCCTG
          1 CTGCTCCTG

                *    
       1192 CTGCACCTG
          1 CTGCTCCTG

                        
       1201 CTGCTTCTCCTG
          1 CTG---CTCCTG

              *      
       1213 CTTCTCCTG
          1 CTGCTCCTG

                     
       1222 CTGCTCCTG
          1 CTGCTCCTG

                     
       1231 CTGCTCCTG
          1 CTGCTCCTG

                     
       1240 CTGCTCCTG
          1 CTGCTCCTG

                     
       1249 CTGCTCCTG
          1 CTGCTCCTG

                     
       1258 CTGCTCCTG
          1 CTGCTCCTG

             *     
       1267 CAGCTCC
          1 CTGCTCC

       1274 AGCTCCTGTT


Statistics
Matches: 83,  Mismatches: 5, Indels: 6
        0.88            0.05        0.06

Matches are distributed among these distances:
   9   76  0.92
  12    7  0.08

ACGTcount: A:0.02, C:0.45, G:0.20, T:0.33


Consensus pattern (9 bp):   
CTGCTCCTG

Left flanking sequence: Indices 674 -- 1173
TCCCCTGCTCATAGATAAGATGACATAGCAAAACTAGTGAGAGTGTGGCAGTCAACCGGGGGCAA
GCCAGCCGACGCGAGCGATGCAGGACCTCGCAATCTCTGTCGGTGCGTCTCTGATATCCGAATTT
GACAAGGATCCAAGCAAATGATGATTGACATAGATGAGTCGGCTGGCCAGCCGCAAACCTACGGG
AGTGATATGAGTCAGCTCCGAGGATGACGCTCCAACGTCACCACCAGCACTCGCTTCTGCTCCTC
CAGCTCCACCTACCCTTTCTTCTGGGCCTCTTCCAGCAAGCTTGCCAGCCACTGTCGCACTTGCA
CCTCCTACCTCTGTCCACCCTCCTCCCGCTGCACCGACCCCCCCTCCGCTAGCTCCGCTAGCTCC
GCCTGCTCCTGCCGCACCTGCCGCACCTGCCGCACCTGCCGCCCCTGCCGCCCTTGCTGCCCTTG
CTGCCCCTGCGCTTGCCCCTGCTGCCCCTGCGCTTGTCCTCACCC


Right flanking sequence: Indices 1274 -- 1581
AGCTCCTGTTGCCCCTGCTCCCGCGGACCCTGATGCTCCTGCTGCCCTTACTGTCCCTGCTCTTG
CCGCTCCTGCTACTTCTACTGCTCCAGCTCCCGTCGCCCCTACTCCCGCCGACCCTGATGCTCCC
GTTGTCCCTGCTGTCCCTGTCCCCGCTGCTCCAGCCGCTCCAGCCGCTCCAGCTCCTGTCACCCC
TGCTCTCGCCGACCCTGCTGCCCGTGCCACCCCTGCTGTCGCGCCCAGCACTACCGTGCAGCCCG
TCCATCCCCCGCCGGCGGTTTCTTCGGTACAATCGGTCGATGATCTCG



Found at i:1195 original size:3 final size:3

*************Found a new SSR********************
 Sequences: ctg1113140260357
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       1421 TGTCCCCGCT

                     
       1431 GCTCCAGCC
          1 GCTCCAGCC

                     
       1440 GCTCCAGCC
          1 GCTCCAGCC

                    
       1449 GCTCCAGC
          1 GCTCCAGC

       1457 TCCTGTCACC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.12, C:0.54, G:0.23, T:0.12


Consensus pattern (9 bp):   
GCTCCAGCC

Left flanking sequence: Indices 931 -- 1430
CTCCAGCTCCACCTACCCTTTCTTCTGGGCCTCTTCCAGCAAGCTTGCCAGCCACTGTCGCACTT
GCACCTCCTACCTCTGTCCACCCTCCTCCCGCTGCACCGACCCCCCCTCCGCTAGCTCCGCTAGC
TCCGCCTGCTCCTGCCGCACCTGCCGCACCTGCCGCACCTGCCGCCCCTGCCGCCCTTGCTGCCC
TTGCTGCCCCTGCGCTTGCCCCTGCTGCCCCTGCGCTTGTCCTCACCCCTGCTCCTGCTGCTCCT
GCTGCACCTGCTGCTTCTCCTGCTTCTCCTGCTGCTCCTGCTGCTCCTGCTGCTCCTGCTGCTCC
TGCTGCTCCTGCAGCTCCAGCTCCTGTTGCCCCTGCTCCCGCGGACCCTGATGCTCCTGCTGCCC
TTACTGTCCCTGCTCTTGCCGCTCCTGCTACTTCTACTGCTCCAGCTCCCGTCGCCCCTACTCCC
GCCGACCCTGATGCTCCCGTTGTCCCTGCTGTCCCTGTCCCCGCT


Right flanking sequence: Indices 1457 -- 1581
TCCTGTCACCCCTGCTCTCGCCGACCCTGCTGCCCGTGCCACCCCTGCTGTCGCGCCCAGCACTA
CCGTGCAGCCCGTCCATCCCCCGCCGGCGGTTTCTTCGGTACAATCGGTCGATGATCTCG


Done.

rsol.ctg.fasta.s2121.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140260358

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1039
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28


Found at i:546 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140260396
    Period size: 9  Copynumber: 3.8  Consensus size: 9

       5864 GTATGGACTA

                     
       5874 TATGGATCG
          1 TATGGATCG

                     
       5883 TATGGATCG
          1 TATGGATCG

                     
       5892 TATGGATCG
          1 TATGGATCG

                   
       5901 TATGGAT
          1 TATGGAT

       5908 TGAATGGGTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   25  1.00

ACGTcount: A:0.24, C:0.09, G:0.32, T:0.35


Consensus pattern (9 bp):   
TATGGATCG

Left flanking sequence: Indices 5374 -- 5873
ATGCATTAACAAACCCGAAACTGGAATCCAGAAGGTAAAGTATCAGTTTCGTCAATCAACCATTG
CGAGATCGTGTTAAGTTGCGATGAAAGACCAGACAGGGGGTAAAGGACTGAAGAGACCTACGTTC
CAAAGGTGACACACATAGACTATTTACATTACACACAACCTCTCAATGTCAGCGAGTATTCTCAG
TATCATTAGATTCAGAAGAACTTACACCTATCACGACTAACCAAGCGCGCAACCCTCCGTCAGGA
AACTCATCTACTGGCGGTGCTGTGGGTTTCTTCTCTATGAGCCTCTGCTCAGGCCCAAAATCGGT
ATTCTGCCATTCAATGTCTTGAATAGAACCTATTCTAGAGTGTCTTGTACTGCCTATCAACCTCT
CCTCTTCGAGTATAGATTGTGTTGGAGTGCAAGAATCAGGGGTCCCATATGCAGTATAGGGGTTG
TACGGGTTGACGAGACTGTAGGAGTTATACGGGCCGTATGGACTA


Right flanking sequence: Indices 5908 -- 6407
TGAATGGGTTGTAAGGAGTTCGATTCGCCATTATGACGGGCCGTGTGGAGGGAGGGGATGAAAGT
AGGACAAGTGAAGAGTCTTTGAGTGTCTTTTATTCACAAGAGGCGAAGCCCGAAGACATTTGGCA
ATATATTGGTAGGTCGGGATGCGGTGTGGTGCCGTGCCAGGACCGAATGAGCGTCATTGAATCAT
GGCCGACGCAGCCAAAAAGCACAGCTTTAAGCGCTGAATGATTGAGTTAATCAGGAGCGATTCCC
TCAGTTCATCCCCACTATACCACCCGCTGTTGCTGTATTACACAATCCCATAAGACATACCTCGT
CCTTCACATCTTGCTTTTCCACCAGCACCACCCATGCTCCTCAGGGTGATTGCACTTATGCATGG
GGCAGCCTCGTGTCCGAGCGTCAGTTACGGCGCATCCGATCAGGCGTTGATACTAGACACAGCCT
TTGTATTCAATAAGATCACCACTTCGCCCCGAGCCACAGCTTGGC


Done.

rsol.ctg.fasta.s2158.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140260441

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1524
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28


Found at i:1109 original size:19 final size:19

*************Found a new SSR********************
 Sequences: ctg1113140260552
    Period size: 9  Copynumber: 6.7  Consensus size: 9

          1 CCATCTG

                     
          8 GTCCTCCTC
          1 GTCCTCCTC

                 *   
         17 GTCCTTCTC
          1 GTCCTCCTC

                     
         26 GTCCTCCTC
          1 GTCCTCCTC

               *     
         35 GTCTTCCTC
          1 GTCCTCCTC

               *     
         44 GTCTTCCT-
          1 GTCCTCCTC

            *         
         52 TTCCCTCCTC
          1 GT-CCTCCTC

                  
         62 GTCCTC
          1 GTCCTC

         68 ATCTTGCTCG


Statistics
Matches: 43,  Mismatches: 6, Indels: 4
        0.81            0.11        0.08

Matches are distributed among these distances:
   8    1  0.02
   9   41  0.95
  10    1  0.02

ACGTcount: A:0.00, C:0.50, G:0.10, T:0.40


Consensus pattern (9 bp):   
GTCCTCCTC

Left flanking sequence: Indices 1 -- 7
CCATCTG


Right flanking sequence: Indices 68 -- 567
ATCTTGCTCGTCCTTGTCCTCGTCCTCGTCCAAGTCACTCAAACTTGGTTCCATCATGGTTTGCG
AACCCATATGGGATATGACGGCTATGAAAACATGGGAACAGTAAGTAATGAACACCTCAAACATA
AACAACTTACCTGATGACTTGGGCTGCAGAGCCTTTGTATGGGTGGTGTGCTTCACTTTCGACTT
CACTTGGGTAGAATGAACAGCTGCAAACTGGGTAAGCGATTACCTTATGCGCATATATCCATACT
CACTCTTGACTGACAATGGTGTATACTCCCCCTTACTTTGTGCCTGAGTGGGGTGGCTTGTCTTA
ACCGACGAATTCAACATATGCGACCGGATTGCAGCAGGCTTCACGAATGTATGTTTCTTTTCGTT
ATGCTGACTGTTAAAGAACGTATGTAGCGGACTCGTGCGAAGGCACGCAAAATATATGTATATAT
GTCGGAATATGATATATATGGCAGTGATACTACTATATATGGGCC


Done.

rsol.ctg.fasta.s2206.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140260580

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1816
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23


Found at i:760 original size:20 final size:20

*************Found a new SSR********************
 Sequences: ctg1113140260618
    Period size: 9  Copynumber: 6.1  Consensus size: 9

       2091 ACTGCTACTG

                 *   
       2101 CGTCTACTA
          1 CGTCTCCTA

            *        
       2110 TGTCTCCTA
          1 CGTCTCCTA

                     
       2119 CGTCTCCTA
          1 CGTCTCCTA

             *   **  
       2128 CATCTATTA
          1 CGTCTCCTA

            *        
       2137 TGTCTCCTA
          1 CGTCTCCTA

                     
       2146 CGTCTCCTA
          1 CGTCTCCTA

             
       2155 C
          1 C

       2156 ATCTACGTCT


Statistics
Matches: 35,  Mismatches: 11, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
   9   35  1.00

ACGTcount: A:0.16, C:0.36, G:0.09, T:0.38


Consensus pattern (9 bp):   
CGTCTCCTA

Left flanking sequence: Indices 1601 -- 2100
GGGCCGGTCGCATAGCTATTGCAAATTACATTGCATATCGCCCGAAGTACGGCCTTACTAGGCGC
TTACACTACTCACTCTCCCTCCATACACCGTAGAGCGTGCCAGATAGAGGCTCGGATTCCCCACT
CTTTTTTATGCTCATCGTACCCGTTTTTCTACATTACCTATGCTACGTTCGATCCTCAGGCAATC
ACCCGCACGACACATCCCACGATTTTTCCCTAGGGTCTTTTCCCCTTCAGGCACTTCCTACCTCC
GCCCGCTCGCTAAGTCATTTCCCAACTCGTAATTTCTCGGACTCCTTTCGGTATACGCTACCTAC
CGCAAAGTAAAAACTCCACACCCAGTGTATGATTCGCTAACCTCTTACCAATGCCGGTACCACTC
CGCCTCCCCCCCTACTACTACCAATATTCACTTTATTACCCCTACCGCAACCATTACTACTACGA
CTCCCAATAAGGCTGTTACGTCTACTACATTTTCTACTGCTACTG


Right flanking sequence: Indices 2156 -- 2331
ATCTACGTCTCCTACATCTACTATGCCTATAGCTCCCATCCCTGATATTTCCACTGCTACTACTA
CTAATATAACCGCTATATATGATACCATTACCACTACCAAGTACTGTGATAAGCTTAATTGGCGA
AAATTTAAATACTCAACATCTCTCTGAAGCTACACTCGAACACTAT



Found at i:2138 original size:27 final size:27

*************Found a new SSR********************
 Sequences: ctg1113140261240
    Period size: 9  Copynumber: 4.4  Consensus size: 9

       2020 TTGGCTCGGG

                     
       2030 TGACTCAGA
          1 TGACTCAGA

                     
       2039 TGACTCAGA
          1 TGACTCAGA

                     
       2048 TGACTCAGA
          1 TGACTCAGA

                     
       2057 TGACTCAGA
          1 TGACTCAGA

                
       2066 TGAC
          1 TGAC

       2070 GAGTCCGATT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   31  1.00

ACGTcount: A:0.33, C:0.23, G:0.23, T:0.23


Consensus pattern (9 bp):   
TGACTCAGA

Left flanking sequence: Indices 1530 -- 2029
CTACATCCTGAGATCATGACCCGCATCTTCTACATGATACTAGCCAAGCCATGCCACCTTCGGCT
CCTTCCAGGCTGTCGCCGTGTTAAATCTCTCGATCACCACGACTATTTGCTACATGTTTGCTCAA
GGTGGCGCCATATCCTGTTATCGGATTCCTTACTCTGGGCCCATATCGATTTGGCCCCAGGTCAC
TCTAAACTCCTGGTCTCCCGTGCTATATCACAGGCGGAATGGATCGGCGCACTTCCATTAGGCAT
TCATATAACTGACGCCGATATGAAAGAATACGATGATGACGACGACCACGAACTTTTCCAATTCC
TTGGCCTAGTTGCCAGCCGCATAAAAACCCTCGAGTTCGACGTTACGGCTGACGACTGGGATGTT
TTCCACTCTGCTGTTCTTGAGGCACTTTTGCCTAATTGCTCATCACATTTCACAAAACTTGTTCT
CAGATCACAAGACGGCTATGATAACACCTTCATTATTGGCTCGGG


Right flanking sequence: Indices 2070 -- 2569
GAGTCCGATTACCCTCAGAGGCCCAGGAGGGGTGGTCTTCCGTTACACATACGAGGACAGAAATT
TGAAGAGAGCTTAGCAAGCCTCGCGGTTCTTCATTTGGATGGCATATTTCCACCCTGGGGTAGTA
AAGCATATCATGGACTCGTCGATCTTCGATTGGCTTCTGCTGACTGCGATTGGCATTTGATGAAG
GAGCTAGAGCTCAAGGCGATCTTGAAAGCGAGCCCTCAACTGAGGATCCTTCACCTAGCTCTACA
TTTTACCGATACATTCCCCGAGCTTAAAGATACAAATCCAGTTTACCTCAAAGATCTGGAGGTAG
TCAGCCTATCCACCTGCTCTGACTCTGACCCTGAATATTCCGTACCACAACTCACGCGCATGCTC
CGGTTGCTTGCACCCGGTTCACGGCCACTTCGACTTTCCTTGCAAATTATATCCTTTGAACAACC
GCTACTGACAGAACTCGACCGATTCCTGTCCCGGTCGAACATAGA



Done.

rsol.ctg.fasta.s2463.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140261242

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 7969
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26


Found at i:433 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140261429
    Period size: 9  Copynumber: 3.0  Consensus size: 9

        813 ACATCGACAG

                     
        823 CGGCAGCAA
          1 CGGCAGCAA

                     
        832 CGGCAGCAA
          1 CGGCAGCAA

                     
        841 CGGCAGCAA
          1 CGGCAGCAA

        850 GAACGAGGGC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00


Consensus pattern (9 bp):   
CGGCAGCAA

Left flanking sequence: Indices 323 -- 822
AAGCCAAGACAGTACAGGTACCCGGTAGACGTCCTGCAAGGCGGGAGAGCAAACCAGCATTAAGA
GTACGAGTTAGCGACATATACACACACACGAGCATGCGTGGCACTCATGCGTGTCCCCCAACTCA
AAACCCCCTGTGTCGGTCTGTCAAGACAATATCATGAAGAGTACGAGTTAGCGATATATACGCAC
GCGTGAGCATACGCGGCACTCACGCGTGTCCCCCAACTCAAAACCCCCTACATCGGTCTGTCCAG
ACAATATTGGTTAGTGATACAGCCAACCAGCCCGTGACACACACATACACCCTAGAATGCCTCCA
ATATAGTGACCGCGTACCATAGATCAGAGCTGCCACCGTGGACCGTGGGATGCATGCGGCCGAGA
ACGTCCGTCGGTGGCCGCCTAAATATCTGCCGTGGTGAGTCGCGAGCCTTGAGTTCGACCAACAA
TACTTACTTTTATGAACGAGCGGGTCGTTCAGGGCACATCGACAG


Right flanking sequence: Indices 850 -- 1187
GAACGAGGGCGAGAGGAGGGATGGGACAGGAGTGGTGGTGGTCGGATGCAGGAGTGTGGAGCATT
TCATAAGACTACTGATTACGTGTAACCGCCAATAGATTGAGCTAAGCGCCGAGCGACTTGGACTT
CCGGGCTGATTTGCTGCTGCGATAGATTCGAGAATATCGGCTAGACAAAATAAAAACTAGATTTT
GATTAATGTGAATAAATGTTACACTTAAGAGCCAGTTCAATAGCGTACCAATGTTATGTATCTAA
ATACAGCAATTAAACTGCTGTTCCACGAAGCGCTTGCCGAGGACCACACCTGCAGCTTGGTGGAA
ATAGAACGTCAGT


Done.

rsol.ctg.fasta.s2544.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140261440

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1021
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24


Found at i:243 original size:135 final size:136

*************Found a new SSR********************
 Sequences: ctg1113140261451
    Period size: 9  Copynumber: 5.9  Consensus size: 9

       3253 AGAGTACCAG

                     
       3263 CAGCAGCAA
          1 CAGCAGCAA

                     
       3272 CAGCAGCAA
          1 CAGCAGCAA

                     
       3281 CAGCAGC-A
          1 CAGCAGCAA

                     
       3289 -A-CAGCAA
          1 CAGCAGCAA

                     
       3296 CAGCAGCAA
          1 CAGCAGCAA

                    
       3305 CAGCAGCA
          1 CAGCAGCA

       3313 GCAAGGGTCG


Statistics
Matches: 38,  Mismatches: 0, Indels: 6
        0.86            0.00        0.14

Matches are distributed among these distances:
   6    4  0.11
   7    2  0.05
   8    2  0.05
   9   30  0.79

ACGTcount: A:0.44, C:0.34, G:0.22, T:0.00


Consensus pattern (9 bp):   
CAGCAGCAA

Left flanking sequence: Indices 2763 -- 3262
AGCAGATGAACGAGATCTCACGTCGTGCAGAGGGCTCGAGAATGTCGTTTGGGGATAACCCTGTT
TCGATGCCGGGCATGCAGAACCAGATGCCGACTCAACCGGGAATGGGAAACATGAACGCCATGGC
CAATCAGGGCATGGCCAACCAGAACCCAATGGCGAACCAAGCCGTGTCCAGCCAACCTCCGAGCG
TACCCAACTCGAGCATGCAGCAAAACCAGCCCCAGATGAACTCTCAGCCCCCGAATTCTGGGGCG
ACCGTGATCGGTGGCAAGTCGATGCAGCAAATGTCCCGCGAAGAGTTGCTCGGCCGGGTCGAAGA
TCTCCAGCGCGAACGGCCGGATCAGCAGCCGTTTACCCACTCGGGCTTCTTGCCCATGCTCAACA
ATTCTCAGATTGACCAGCGATACGTTAGGCAGCGCGAGGAGGAAGAGCAGCACAAGGGGTTGCAG
GTCATCACGCTCGGTCAGCTTGTCCCACGCGAGGGAGAGTACCAG


Right flanking sequence: Indices 3313 -- 3812
GCAAGGGTCGTCGATGCCTTCGCAGGCCCAGCAACAAGCCCAGCAGCAACAGTCTCAAATGTCGC
AAATGGGCATGGATCCGTATACCCCTCCTGCCAACTATCACGGCCCCACCCCCTCGACGTCCAAC
TCGGGTCCACCCAACTCGATCCCACTCTCGGCTGGTGGAGGCCCCAAATCCTTGCGCGTACGCCG
CTCGACTTATGTCCCAGGCTGGGCCGTTCCACCCCGCGTCTTGCTCGTCGACGACGATGCGGTCA
ATCTCCGTCTGAGCAAAAAGTTTTTGCAAGTGTTTGGTTGTATGATCGATGTCGCCGTCGATGGT
GTAGGCGCGGTCGACAAGATGAACTTGGAGAAATACGATCTCGTGCTCATGGTCGGTCCTGAATT
GATTTTATCCCGAATTGGGTACTCATTTGCTTTTTATAGGATATTGTCATGCCCAAGATGGACGG
GATCAGCGCCACGTCTATTATTCGTCGATTCGACCACATGACGCC


Done.

rsol.ctg.fasta.s2555.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140261463

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 18615
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26


Found at i:5104 original size:17 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140261928
    Period size: 9  Copynumber: 3.0  Consensus size: 9

       2867 CATTAGCAAT

                     
       2877 TGAGCCCGA
          1 TGAGCCCGA

                     
       2886 TGAGCCCGA
          1 TGAGCCCGA

                     
       2895 TGAGCCCGA
          1 TGAGCCCGA

       2904 CCCAACCTCC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.22, C:0.33, G:0.33, T:0.11


Consensus pattern (9 bp):   
TGAGCCCGA

Left flanking sequence: Indices 2377 -- 2876
TGAAAGGTGTGATCCATTTATTAAATAGCCCTGAAAATATCTGTGACATATTAAACAAGATTTCG
ACTTATTTCATCCTTTGGAGACGGGACTATTCGGCCATTCAGTGAAGATGTGTCAAACATTTCTC
GACCTGCAGCCAGAAACTACGAAGACATTCTGCAGGTTTCTTCTTATATGTTCTGTGTTTTAACA
AGCACCTTAACTCACCTTTCACAGTGTATAATTCCTGCAGTTGAAGGGTTATTGCCTTCCTCCAT
TGAAAGCCAAGTGCTCACTCTGCTGTTCGTCCTGGCACACTGGCACGGCCTTGCCAAGCTCCGGC
GACACACCACTGCAACTGTGGACGCGTTAAGTCACACGACTACCCGACTCGGGCACGAACTGCGT
GAATTCCACCGGTATACATCCGAACTTGATGTTTACGAGACCACAAAGGAGCATGCCGCTCGTCA
GCAACGCCTTCGTAAGAAAGCACGACCGCGCGCCGCATTAGCAAT


Right flanking sequence: Indices 2904 -- 3192
CCCAACCTCCGATTCGCGCTATCAGAGTCGACGCCGCAAGTACTTCAATCTAGAGACGGTGAAGC
TTCATGTAGTAGGGGACTATCCAGAATCAATCAAGCGTTTTGGAACTACCGATTCAACATCAACC
CAAACAGTTAGTATTATCCTCATATATCAACAATTGACCAATCTAGCGTTAGGGCGAGCTTCTAC
ATCGTCATGGAAAGCGTCGCTTTGGTCGAACAAATGGAAAGAAATACGCTCGTCAGATGGACAGG
ATTCAGCGGATTGAATCTCGACTCAGCGA


Done.

rsol.ctg.fasta.s2745.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140261951

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1825
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.23


Found at i:662 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140262086
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       8973 AGTCACGACA

                     
       8983 GCACTGGTC
          1 GCACTGGTC

                     
       8992 GCACTGGTC
          1 GCACTGGTC

                    
       9001 GCACTGGT
          1 GCACTGGT

       9009 AACAGGAGTA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.12, C:0.31, G:0.35, T:0.23


Consensus pattern (9 bp):   
GCACTGGTC

Left flanking sequence: Indices 8483 -- 8982
AGCAACAACACGGACCTGAGGGTATTCTGTGTAATGGTGTTAAAACATGGGGCCCTACATCAACA
GCGAGAAACTTACTGGTAATCCAGGCAGCAATGTCATCGATGTATTGCTTGTAGATGGCCTCGCC
ACCGTTGGCAGATGAAAGTTCTCCGTTAGAGGCTAAAGCGTGGCAATCACGGTCCGGAAGGTCAT
AGACGACGATCTGGACGAGTTGCTTCTTGCCAGTGCTCTCGTACTTGGCCTGTGCGTCGGCGAGG
TATGTACCAAGAGTGGGGACCTTGGCGCGGACATCGAACCAGGTGAAGGTAGGGATGTTCGCAAC
CTTGGCAGCCTTTGCAGCGACGGTGGAATCAGAAATGTTCTTGACTGCGGCGGCAACCTCAGCAG
CATAGTAAGGCGAGAGCCAGACGGTGTAGTCCGAGGTGTATGGGTTGTCCGAGGGACCGACGGTG
CTGACGGGGGTAGATGCAGAGGTAGTGCCGGTGGCAGTCACGACA


Right flanking sequence: Indices 9009 -- 9067
AACAGGAGTAGTGGCAGAACCTTTGATGCACTGGTAGTAGTAGTCGTTGACCTTGACGC


Done.

rsol.ctg.fasta.s2801.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140262087

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 4308
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.27


Found at i:495 original size:126 final size:126

*************Found a new SSR********************
 Sequences: ctg1113140262325
    Period size: 9  Copynumber: 11.9  Consensus size: 9

       1090 TCGCCCTCAC

                     
       1100 CCTCCTCGT
          1 CCTCCTCGT

            *        
       1109 TCTCCTCGT
          1 CCTCCTCGT

                     
       1118 CCTCCTCGT
          1 CCTCCTCGT

                     
       1127 CCTCCTCGT
          1 CCTCCTCGT

                     
       1136 CCT--T-G-
          1 CCTCCTCGT

                    * 
       1141 CCGTCCTCTT
          1 CC-TCCTCGT

                     
       1151 CCTCCTCGT
          1 CCTCCTCGT

                   * 
       1160 CCTCCTCTT
          1 CCTCCTCGT

                *    
       1169 CCTCTTCGT
          1 CCTCCTCGT

                   * 
       1178 CCTCCTCAT
          1 CCTCCTCGT

                  *  
       1187 CCTCCTTGT
          1 CCTCCTCGT

                    
       1196 CCTCCTCG
          1 CCTCCTCG

       1204 CCCCCACCCT


Statistics
Matches: 78,  Mismatches: 12, Indels: 10
        0.78            0.12        0.10

Matches are distributed among these distances:
   5    2  0.03
   6    2  0.03
   7    1  0.01
   8    1  0.01
   9   70  0.90
  10    2  0.03

ACGTcount: A:0.01, C:0.52, G:0.10, T:0.38


Consensus pattern (9 bp):   
CCTCCTCGT

Left flanking sequence: Indices 600 -- 1099
AGTTTATGTATCCCCTCCTGGATTTCCGTACCCTAACTTGTATGCATGTCTCTCAATTTTGGCAC
ATCATCTCTTAGCATTTTCTGCTACGTGTGTAGACATTAAATCAAAGCTGTAATTATGAAAGCCA
ATGAGACAGCAACGAAATCACAGGAACAGTGACAAAAGAAAACATATGAGAGCAATTTACGAGTC
GAAAGCATATTAAAACCTAAGAATTGATCTACTAAACCTCTGCCTTATTTCTTTGAAATACCACC
AATTTGAGCTAGCTTGAGTTTCCCCTTGATACGCGCAGCAGCGGGGCCTAAAAATAATCAAATAA
CCAAACAAACAGCAGACAAGATAACACTTACCGGGTTTCCCTTTCTTGGTAGCTGATGCGGCTGC
CTTTTTCCCAGATGAAGCCTTCGACAGTTTGCGCTTTTGCTTTTTCTTGGCCGGGAGATTGGTCT
TGTCGTCATCGTCTTCGCTCTCAGTGTTGTCAGATTCGCCCTCAC


Right flanking sequence: Indices 1204 -- 1703
CCCCCACCCTTGCCCTTATCCTTGCCCACGCCCTTCTTAACACCCACTCGCTTTCCTCCTCCATC
CGATCGGCTAGCTTTCTGGTTGGCAGGCATCGGCGTAACTTCACGTGGGTCATCCAATTCCTCAT
AGTCGAGCGAGACGGACCCATCACGCTCGGGTTGTGTACCGAGACTACTTTGCTTGCCCCACCTC
GAGTTAGTGGCGGCCTCTCGGGAACCTGCGCTGGTAGATGGGGGGGAGCTGGGGTCGTCTGTGGG
GTCTCGGGGGCTGTTGTTTGCACCGGCGGGGCTCGAGTACGTTTGCCGCGGTCGCGTATCAGATG
AACGAGAGAGATTACGATGGGTGGACCCACGTGACAGCATCTCCAACTCCTCCAAAGTGGGATCG
TCCTCGGCAAAGTCGTTTTCGGATAGGACGTTGTCCGTGGGCTTGGTCTCCTTCTCATTCACCAA
GCATCCTGCTTGCTCCCTGTAGACACAGTTAATAGTTGATCGTAA


Done.

rsol.ctg.fasta.s2914.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140262342

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1123
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27


Found at i:883 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140262342
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        857 ATCAGAGTAC

                     
        867 TTGCTCTTG
          1 TTGCTCTTG

                     
        876 TTGCTCTTG
          1 TTGCTCTTG

                   
        885 TTGCTCT
          1 TTGCTCT

        892 CACAGCATGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.24, G:0.20, T:0.56


Consensus pattern (9 bp):   
TTGCTCTTG

Left flanking sequence: Indices 367 -- 866
TATCGTTTGGTATATGTGACTTAGGAAATAAGTCACAGGGGAGTGTGACGACACTCTGGGTTATG
ACACAGAGGTAGTCTCAAATATGCCATAAGTAGCAACAGGTAGGTCTCCAGATCATAGGTAGCCA
CAGGTAGACATCAGGCATCTCTGTAGATGTGGGTAGATGCAGGTAGACATGGGCTGATCATGTAT
ACAGTGTTGTATGGGTCCTTGCACCACCAAAATTAGTTTGTCCCCTCTCACCTGCCCCACTCACT
CAATTGCTACCAGATTTACTGTAACTATGCATCATCTTCAAACGAATGATTATTCGAGAGCACAA
GATATTATAATTAGTTATAAGTGAGATACAGTCAAAGAGGCATTAGGCATATAAAACGTGACAAA
ACCATCCTTGCACCAGCATGTGCAGGGGCTATTTAGCCAATCAGGATCCACTAACATAAGCAGTG
AACAAATTTGTGACCCATCATTTGCAATCAGAGGAATCAGAGTAC


Right flanking sequence: Indices 892 -- 1123
CACAGCATGGCTGGCCATCTGGATAGCTTAACAGAGGAAGGAAAATCAAGATAGTAGATCAGATG
GGAGGCAGTAAACCAGATGGAAGATTGGATAGGTTGACATGCAGTTGGGCTGGGTCTTAAATAGG
AAGTGTTACCAATCATGCGTGACAACACATTTCAGAGCCTATAATGCTCTCCTGGCTAGTTGGGA
GTGACAAAGTGGATTTCATGGAACAAAAATGATACAG


Done.

rsol.ctg.fasta.s292.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140256209

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1288
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29


Found at i:483 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140262406
    Period size: 9  Copynumber: 4.7  Consensus size: 9

        592 CAGCCTCCTT

                     
        602 CGCCGCCTC
          1 CGCCGCCTC

                     
        611 CGCCGCCTC
          1 CGCCGCCTC

             * *     
        620 CACTGCCTC
          1 CGCCGCCTC

                     
        629 CGCCGCCTC
          1 CGCCGCCTC

             *    
        638 CTCCGC
          1 CGCCGC

        644 ATCCTTCTCC


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   9   28  1.00

ACGTcount: A:0.02, C:0.64, G:0.19, T:0.14


Consensus pattern (9 bp):   
CGCCGCCTC

Left flanking sequence: Indices 102 -- 601
TGCTCGTGCGTGCCCGTATAAGCTGGCGGGAATGACCATCCGTTCCCTGGTGGGAACAGGTTATG
AACAGGGATGGCGGGCAATTGTGTACCCAAGTGGAGGTGGTCCAACTCGTTCGAGACACCTTCTG
CCCCTTGTGAATCGGCTGCAGGGGGAGGTAAAGGCTGATCTCGGTCGTCATTTACTGAACATATA
ATGGGCACATTATCTTCGGAACTCACCAGCTCCTGTGTGGCAGGTGTATCATGGCGAGGACGAAC
CGCATCCGGGCCTTTTGGTTCATCATCTGGTGCCTTGCGCTTGGGGCCCCTTGTGGTGGGCGCTT
GGGTCGTTGCTGGCACCTTCTTGGGTGGTCCCGTCCTGCTCACCGACTTTCGGCCTGTCGTACTA
TCCCCTTTGGCGGATGGTACCTCCCTGCTGGTACCGGGGCCTTCGCGATTTTGGCTCCGCGTCTT
CCTGGCTACGGCTTGTCTTGTCGTAACGGGCCCCGCAGCCTCCTT


Right flanking sequence: Indices 644 -- 1143
ATCCTTCTCCGCATCCTTCTCCGCATCCTTCTCCGCATCCTTCTCCGCATCCGTCTCCGCATCCT
TCTCCGCATCCTTCTCCGCATCCTTCTCCGCGTCCTTCCTCGCATCCTTCCTCGCATCCTTCTCC
GCAACCTCCTCCGCATCTTCCTCCGCGTCTTCCTCCGCATCCTTCTTCTGTGACTTCATGCGGCT
GGAGCTGGGATCAGCTTTCTTCCTCTTGGCCGCCGCTTTCTTCCCGACCTGCTTGGTCTTTGCTG
CTCCCTTTGCAGCCCCCTTGTCTTTCTTTTTCTGCGTACGCTGCACACCCTCGTCTTCCACTTCG
GCTCCAACGCCATCGGACTGCCCATCCTCGCCTACAAATGGATCATCCCCCTGGCTTGAACTCGA
GTTGGGGTTCTGGTTTTTGAGGAATTCAGCGAGACCTTCTTCGTCATCTGTCAGGTCTCCGTCCT
GAGCCCCGTCACGGGACGTGTCCTCTTCACCGATTTCCTCCTTAT



Found at i:663 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140262612
    Period size: 9  Copynumber: 6.2  Consensus size: 9

       3748 TCCACTTGCA

                *    
       3758 CCTCCTCCT
          1 CCTCTTCCT

                     
       3767 CCTCTTCCT
          1 CCTCTTCCT

                   * 
       3776 CCTCTTCTT
          1 CCTCTTCCT

             *       
       3785 CTTCTTCCT
          1 CCTCTTCCT

                   * 
       3794 CCTCTTCTT
          1 CCTCTTCCT

                     
       3803 CCTCTTCCT
          1 CCTCTTCCT

              
       3812 CC
          1 CC

       3814 ACTCCGTCTT


Statistics
Matches: 40,  Mismatches: 7, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   9   40  1.00

ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46


Consensus pattern (9 bp):   
CCTCTTCCT

Left flanking sequence: Indices 3258 -- 3757
GACCGAACCAGTTTGCTCAGGGCGCGGCTAATGCTCCATTACCTGGCTCACTACATACACCTCTC
CATACGGCTGCCTTACAAGGTTCGGTTCGTTGTACTCGCGCACTGTTGGAAGTCGGAGCGTTGGT
ACACGTGCGAGATGCGTTGGACCATACGTGTTTATTCTATGCTGCGAGAGTGCGGGCGCGGGAGA
TTGTTGAGATGTTAATCGAGGCTGGCGCACATCTGGGTGAGACGGATAAACGAGTCGCATTGGGG
ATCGGCATTATTGGTGGGAAAGAGGAACAGGAGATTTGGAAGCTTGCAGGTCTTGAAGTGAACTG
AAGCTAGAGTGGATGAATTGGAATGAAATGGAGAATATGGTAAAAACCCAAATAAAAATGTACTT
TGACAGCGCCGATATATAAAGAAATACAAAGCACCTGAATGCTACAAGAAAACACGAATACCTTC
AGTCGTCATCGAGAATGATCGCCGAGCCGTTGTCTTCCACTTGCA


Right flanking sequence: Indices 3814 -- 4313
ACTCCGTCTTTCCATCGTGTAACGCCATTATTGATTTCCATACAAAATTCCCACATTTGTCGGTC
GAAGGGAGTGTTTTCTTTGACAAACGTAAAGGGGTCATTGAGGATTTTCAGTCCATGCAAGAACT
CCTGGTCTTTTTCGTGTTCTAGCCCAATGGGGAAGTATCGAACGGTATCAACCAGCGTGTTTGGA
TCGGGTTCTCCGTCAACCAATACTGGCGTTTTGTACATGTGGAGTTTAAAGTATAATGCTGCAAG
ACATGCGTTAATTGGGATCCGTGATCAAATTTGGGAGGGGAATCAAACTTACTTTTCTGGTAAGT
GGTGCAGTCGCATTCCAGCTCTGTAATGAGCCCGTACTCGTCAGATGTGAACTGCTTGGCACTGT
GAACCTTGATAGTCGTCAGATCCTCATAGAACGCTAGTTTCAGCTGGCTCTCTTTGATGTCCTTT
TCCTTGCTGTTATCCGATTCGTTGCCTCGCTGTCTCGAAGGCCTA


Done.

rsol.ctg.fasta.s3026.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140262613

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 3530
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31


Found at i:2856 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140256258
    Period size: 9  Copynumber: 3.3  Consensus size: 9

        335 TTTCGGCTTG

                     
        345 TCCTCCGAC
          1 TCCTCCGAC

                     
        354 TCCTCCGAC
          1 TCCTCCGAC

                     
        363 TCCTCCGAC
          1 TCCTCCGAC

               
        372 TCC
          1 TCC

        375 GGCTTGTCCT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.10, C:0.57, G:0.10, T:0.23


Consensus pattern (9 bp):   
TCCTCCGAC

Left flanking sequence: Indices 1 -- 344
AATGTACAACCCAAGAAAAGTACACAAGAAAGCTTGAACACTGCTGATTCCGGCTACTTTTTAGC
CGGCCTTCCCCTCTGCTTCGGTCCCTCTTCGACCTTGCTCCGCTTGGCAGGTGGTACATTCTCTC
CCTCCTCCTCTTCCTCCTCCGACTCGCTTTGGACTTTAGGTTTCCGGCCTCGTTTTGAAGTGGGC
TCGTCGGGTTCGCTCTGGATCTTGGATTTTGGTCCGATCTTGCGTCCTTTCTTGGTCGAAACTGG
ATCCCGTTCTCCTGGGTCCTCTTCCTCTTCCTCTTCCACCTCATGGTCTTTGACCTTCGATTTCA
GCCCAACCTTTTCGGCTTG


Right flanking sequence: Indices 375 -- 874
GGCTTGTCCTTGGATTCAAGTCCGACCTTATTCCCCTTCTTGGCCGGCACCGGTTCCCCGTCCTC
CTCTTCCTCCTCATTCTCCTCCTCGACCTTGACCTTGAACTTTGACCCGACCTTTGCCTTTCCGC
CCTTCGACTTCGGTCCAACTTTACTTCCCTTGTTCGGCTTGAATCCCTCTTCTCCTTCGCTCTTT
CCATCTTCTCCTTCATCTTCCTCCTCGCTGTCGGCTTCCTTCATTTCGACATCCGCCTTGGAAAC
CTCAAGAACTTGGCCTTGCCTCGGAATAGGCGGCTGACCGGGGATCCTCTCCAAGTCTAGTCACT
GATTTGTTCAAAAACACGACAACAACAAGCGAGAAAGGGCAACGCAGGCCCAGTCTCGAAAGACA
AAGCACCATGCGCTCGACACATAAAAACAGATCGAACGAGCAGCTCAAAACAACAAGACAAAACT
CACTCTAAACACAAACTTGCACACCTTCCGCCCCTTGAGATTATT


Done.

rsol.ctg.fasta.s3113.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140262798

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1635
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30


Found at i:1154 original size:20 final size:20

*************Found a new SSR********************
 Sequences: ctg1113140262806
    Period size: 9  Copynumber: 4.7  Consensus size: 9

       4324 GGTAAATCCA

                     
       4334 AGGATTCAG
          1 AGGATTCAG

                     
       4343 AGGATTCAG
          1 AGGATTCAG

                *    
       4352 AGGACTCAG
          1 AGGATTCAG

                *    
       4361 AGGACTCAG
          1 AGGATTCAG

                  
       4370 AGGATT
          1 AGGATT

       4376 TGGAGGACAA


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   9   31  1.00

ACGTcount: A:0.33, C:0.14, G:0.33, T:0.19


Consensus pattern (9 bp):   
AGGATTCAG

Left flanking sequence: Indices 3834 -- 4333
GATACTTGACGACTGTTGTATCCTTGGGCCATTACATGATCGCAAGGCCTTCGTTTCCAGCTCCC
CTTGCGTGTCGCACAGGTCTAATCCAACCACCCATCACACCTATAGCTTGTAATCTAGTGGTATA
CCACCTCTTATTCTTAAATATCTCTTATGAGCCTGGTTTTACACACTGTGACGATAAAATAATAA
CCAGATTTGAAGTTACAGCTATGCCACGGCCAGAATGGTCAAAGCGTCGCAGACAGACACAACGG
GCAGCAGATGATGCCACCAAATATCTATGGCAATGTTCATACTGCCCAGGACTTTTTTCAGTTTA
CAAGAATGCATGGAAGATTCATGAGGGCAAGTGCAGGAGCCGACATCAGACTAGCGAAGCTGGAT
CAAGGACCGCCACATCCAACGTGAGTTTGAGTATAAGCCTTCTTACAGTTGTAATTGAAAGCTAA
TGTCAGATTTCTCCCATGAGTCATTCAATTGGCAGGGTAAATCCA


Right flanking sequence: Indices 4376 -- 4848
TGGAGGACAACTTTATTAAAGATGGTTATTGGAATGGGTTTGGAGCTGATATGATCCCAGAAGGT
GAGGATAGCAAATTCTCGTATACTTTTCTCACATAGTTCTAGACCAGGAGTTCCATTATGGTGGT
CGCTCCGAACTGGACACGCATCCCCAAGACCCCAACAACATACCATCTTTAAGCAAGGGTCAAGT
CTGGATGAAACGACACCCCTCATCCAAGCAGCCTAGTGGGCTCTTTATCCCTGATTTGCAGGCGA
GTGAAGGCCAAGGGGCTCACATCGATGACAACCTTCCATCTCACTTTCCATTCAAGAGTCATGAG
GATTTTGTGCAAGCCGAAATTTTCAGTGACTTTGGGGATACCGATAAGAAGATTAATCGCCAACT
TGCATTAGCCTTGGCAAGGTCTCATTGAAGAATGCAAAGGAGTATCATGAGACACTGGCACTAGC
AACCGTCTCTGGGGGGGG



Done.

rsol.ctg.fasta.s3120.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140262817

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 2174
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28


Found at i:305 original size:23 final size:23

*************Found a new SSR********************
 Sequences: ctg1113140262870
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       1351 TGGAGGGGGG

                     
       1361 TTAGGGGAT
          1 TTAGGGGAT

                     
       1370 TTAGGGGAT
          1 TTAGGGGAT

                    
       1379 TTAGGGGA
          1 TTAGGGGA

       1387 GAAAGAGTAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.23, C:0.00, G:0.46, T:0.31


Consensus pattern (9 bp):   
TTAGGGGAT

Left flanking sequence: Indices 861 -- 1360
GAAACATCGACCTTGCTCATCTACGCCATATTTTTCGGATTCCAACTACCCAATTCCGCCGGATC
ATAGCTATGGTCGGTTAGTGTGCAGGATAATCCTAACGGATACGGGTTCGGCTTTTACGTATGCA
CGGCACTCTGTGTATTGTCGATCTTGCATAGTGCAACGATTCGGTAAGAGGGAAAGAGGGCAGTG
CGGCTCTCGTAATCGTCGGTGGATCTATCTTTGTATTGCTCTAAGCTTTCGATCGTGTAGTGTGA
TTGATAACAACTTGAGTTGGTCGTATTGAAATATCATAGTTCTGCATCTGGCATGTGATAAGACC
GCAAACGCGCATTCAGGTAACGCGATGACGTTCACGCTACTGTATACTACTGTATGTCCTCAACC
TCAACTCATTGCCCCCGAACCGACCAACGCACTTGTTCTATTTGCGGAATGGATTGACAAGATGA
GTTCTTGTAGAGACAAAATTTATATATAAACGCGATGGAGGGGGG


Right flanking sequence: Indices 1387 -- 1886
GAAAGAGTACACAACCCATAGGATACGTGTGACCGCAAGCATAAGGTATTACAAGGGACAAGATC
AGAACGGACATTGGCAAATAGAGAAAGGGAAAGCGGGGCATAAAATGCACCCGTGAAGATAGGTG
CGATCGAAACAGGAATCGTAACATTGGACAGGAGAGGACGGGAGTAGACGGCAGGCTCAGCAGCG
GGCAAGGGGAGCAGATTGTGATGTGCAGGGTAGGCAAGTGGTTCAGGTGGCGGAGACAAGAGGCA
CACACACAGCGATATCCCACGCCTAGTCAGAAAATTAGAAAAAAAAGCCAGCAAAAAGCCAATAC
GTCTACATTTCGCAATCGTACACGGGCGTCGGTGAACAGTGTCCCGCACCTAGCCCAGCCCCTTA
ACCGCAAAGAGTCTACCACGCCCTACTTCCCTCCTCAGTCCGTACCACTCCGATCTCCCGATCCA
CCCACCCACGGGTTGCCGCACCGCGCCGGATGGGAGCGGGTGCGG


Done.

rsol.ctg.fasta.s3149.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140262891

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 5761
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28


Found at i:537 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140263576
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       2100 ACTAGCTTTA

                     
       2110 CTTGGTTGG
          1 CTTGGTTGG

                     
       2119 CTTGGTTGG
          1 CTTGGTTGG

                    
       2128 CTTGGTTG
          1 CTTGGTTG

       2136 ATTTGCTTGA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.00, C:0.12, G:0.42, T:0.46


Consensus pattern (9 bp):   
CTTGGTTGG

Left flanking sequence: Indices 1610 -- 2109
TTTGTAATCGTACATTACAGAAGCGTTGTAGTCCCTCCTCGATTGTCCGTGGCTTTTTCGATGTC
GCCGTTACTTCATATGTAGAGATCTTTTTGAACTAGGACAAGTAAAAACGGTTAGACCCAGCCAA
CATTAATTACAAAGGACGCACCAACTCTCCATACACATACGCAGTGTGGGTGTGCGAAATAGAGC
ATAGGCTTTTCGGATGTTGGTGTGCGAGGTAGCATATAAGGGGTATCGCATCGGCGTCTTGTTGA
AGTATGATATGCCATTGGCCCGGCCGGGGGGTGAACGTAAATGTTGGCCTAATATCGATCATTCA
GGTTTATTCGTAAATCCGAGCGCAATACTCTCACTTGGGAGGCGTATTATCCACGACGGTTTCAG
TAAGCGGCCGGGGTATGGGTGTCGGTTTAACATTAGTACCTATTGCAGCGGGGGCTAATATGGAA
ACTCAGCTAGGTACAATTCGATACGCAAAGTACTCACTAGCTTTA


Right flanking sequence: Indices 2136 -- 2285
ATTTGCTTGACTTGGTTTGTTAAATACAGTTCCCAGCCTTCTATGCGCCTTGTCAGATATCAGTA
GTACTTGGCCATTAACCGGGAATCTCGCGCTTCCATATTGGGTGCGCCCTCGAAGGAAAACCCGA
GCGACGAATTTATTCACGAC


Done.

rsol.ctg.fasta.s3423.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140263577

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 6096
ACGTcount: A:0.18, C:0.35, G:0.20, T:0.26


Found at i:80 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140263601
    Period size: 9  Copynumber: 5.0  Consensus size: 9

       2929 AACCGTACCC

                     
       2939 CCGCCTCCT
          1 CCGCCTCCT

                     
       2948 CCGCCTCCT
          1 CCGCCTCCT

                     
       2957 CCGCCTCCT
          1 CCGCCTCCT

                     
       2966 CCGCCTCCT
          1 CCGCCTCCT

                     
       2975 CCGCCTCCT
          1 CCGCCTCCT

       2984 TCGTCATCAC


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   36  1.00

ACGTcount: A:0.00, C:0.67, G:0.11, T:0.22


Consensus pattern (9 bp):   
CCGCCTCCT

Left flanking sequence: Indices 2439 -- 2938
CGTCTGCGGAGGATGATCAAGCTGACCTGAGGGACCATTTGGGGTGGAATGCGCTAAAAGATATG
CAGGACCCGCACCAGCTCGTCAACGCAATCATGGAGACAATTAAAGAGTCTCCGGCTCTAGCATA
TTTCATGTCGTGCTTAAAGCACCTCCTACTTATTCCTCAGGAAGATACGCCAATTCGTACCAAGT
ACTACCAAATCATCGATGGGCTCATTACCGACATTATACTTGAACGAAGGGTATCATATGCGCGT
GAATTTGGGGACCCCGTTACTAATTCTTTCCGAAAGCTCGCGACAAACTTCATTGGACAGGAGAG
GGCGCGAAAGACTGAAGCCGAAGCGTCAGAGCTTCGAGGTGAACTTGGGCGATTGAAGTATCAGA
AGGAATTAGTGGACAAAAAACTGGGCGAGGGTTATACTGGGTTAGTCGACGAGCTCGGAACCAAA
CCCACAGCACTCCAGGAACTCGGTACTTCGAGTCAAACCGTACCC


Right flanking sequence: Indices 2984 -- 3255
TCGTCATCACCGCATAGTAAGCAAGGGTCGATCCCCAAAGCACCTGAGCTACCTCGTCCGGACAA
TGATACTCCCAAACGTAAAGATGTCGACTTTATGGCCAATACTCGTATGAAGCAACTCCAATGGG
ACAAGATCCAACACCAAGCAGTGGGCAAGACGCTTTGGAACGAGAAAAATATGGACAAAGAACGC
GAGTGGGCCCGTAAGTTGTTATGGGATGGCGTATGGCAAGAAATGGAGAGATTTCAAGGCGAAGC
AACTTGTCATGA


Done.

rsol.ctg.fasta.s3440.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140263619

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1082
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:737 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140264220
    Period size: 9  Copynumber: 3.2  Consensus size: 9

          9 TCCCGCGGCT

                     
         19 CCCGTCGCC
          1 CCCGTCGCC

                     
         28 CCCGTCGCC
          1 CCCGTCGCC

                     
         37 CCCGTCGCC
          1 CCCGTCGCC

              
         46 CC
          1 CC

         48 TGCTGCCCCC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.00, C:0.69, G:0.21, T:0.10


Consensus pattern (9 bp):   
CCCGTCGCC

Left flanking sequence: Indices 1 -- 18
TCCGTGGCTCCCGCGGCT


Right flanking sequence: Indices 48 -- 547
TGCTGCCCCCGCTCCTTCCACTCCTCCCACCGCTCCTCCCACCGCTCCCGCTTCTAGCTCAGCGC
CACGTGGCGTGGGTCCACCAAAGCGTCTCCCGGCAGTTCCCCCTCCCAATGCACCAACTATGCGC
AATGTCCGCGCGCAGTCGCGTGGGTTCACCGTGGAGCCGTAGCCTTGAAACGAGGGCCAATAGTT
TGATTTTGACATTAATTTCCGCCTCTTTTCTCTCTCGCTTGTAAAATGTCCCAAAAAAAATATCA
ATCCGTTCCACTTACTCAAAGGGGCCAGAACGTGCTTCATAGGGCCGCATGTGTGCTAAGCTTTG
CGTACGCCAGTCAACTGAGGTTCACCGTGACCAGATGTTCATAAAATCCCTGGCCAAGCTACTTA
AGACATTCCCTCCACGGTATTCTATGCACCTAGGTGAGAGAAAAGCCACTAATATTCGGGTCCAC
GTAGCATAGCTTTAGTGGCGTTCATCATAGCTCAAGGGCACCACG



Found at i:83 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140264875
    Period size: 9  Copynumber: 4.6  Consensus size: 9

       3146 AACAAAGCTC

                     
       3156 AGAGGTGGA
          1 AGAGGTGGA

              ***    
       3165 AGTTTTGGA
          1 AGAGGTGGA

                     
       3174 AGAGGTGGA
          1 AGAGGTGGA

                     
       3183 AGAGGTGGA
          1 AGAGGTGGA

                 
       3192 AGAGG
          1 AGAGG

       3197 ACGAACAGGG


Statistics
Matches: 26,  Mismatches: 6, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
   9   26  1.00

ACGTcount: A:0.32, C:0.00, G:0.51, T:0.17


Consensus pattern (9 bp):   
AGAGGTGGA

Left flanking sequence: Indices 2656 -- 3155
TCGTTTCGGAGAAGGTGATTGATCTCATTTCCGATTCAATCCTTATTCCACTCACACACATCAAC
AACTTGAAGCCTTGTAGCAGAGGCAACCAAACGGAATTATCTGTTTGACATTCCGAATTACTTGA
AAGTAAGCATTGATGCAGGGTACGCGGGGAACGAGTCTCGGTTTGCGAACCATCCAAACAACGGA
AAAGCCAATTGTGTCGCTAAATGTGAGTCCCTGATCGGTAGGGATATGACATGCCTTTTTTTTTC
CCTGACAAGTTGATATTCAGATGTGTGGTCCGGCGACGAGAAACATATTGCGCTGTATGCGAGTG
GGTACCTGTTGTCATTTCTGCGCTGGGCTGGTACCAACTAACGACTCTTAGCTGATCATACTTGG
GACGGGGATGAGCTTTTCTTGAATTATGGTAAAAGATACTGGCCCTCTGAAATGCCTGGGGTTTA
TGAAGAAGAAAGCCCCGACGAGCAGGGGTCCGAGGAACAAAGCTC


Right flanking sequence: Indices 3197 -- 3235
ACGAACAGGGGGTTTCAGACGAATCTATGGATCTGTGAG


Done.

rsol.ctg.fasta.s3935.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140264898

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 14940
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26


Found at i:1227 original size:17 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140265264
    Period size: 9  Copynumber: 5.9  Consensus size: 9

       2971 CACTTCGAAT

                    *
       2981 GAACAACCT
          1 GAACAACCC

                     
       2990 GAACAACCC
          1 GAACAACCC

                     
       2999 GAACAACCC
          1 GAACAACCC

                     
       3008 GAACAACCC
          1 GAACAACCC

                     
       3017 GAACAACCC
          1 GAACAACCC

                    
       3026 GAACAACC
          1 GAACAACC

       3034 TGAGCAACCT


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   9   43  1.00

ACGTcount: A:0.45, C:0.42, G:0.11, T:0.02


Consensus pattern (9 bp):   
GAACAACCC

Left flanking sequence: Indices 2481 -- 2980
CGCCGAACACCGGGCATTTTTGGAGTGGAAAGATGAGGTATGTCTAATTCAGATGAATTCGGCAT
CAATTGGTTAAACTCTTCTAATAGGGGACGATTCAAACTAGCGATGCTAAACTCCTTTATGCATC
AGGTCCTGCTTAATGTCCATAAAGTAATACTTTTAGATTAGCTAAGACTGATATAAAACGGTTGC
GCATGGAAACTGTACTTTCACAATCAATATTATAGTGGTCACCCGCAGGAACTTACCTCAACACC
CTTCACCACTACACAATCCAACCCATTGTATGCGACATAAGTTGCTACAAGCTTGATGAGTCAGC
GGTATGATCCCGGATGCAATTATCGTAATTGTAGCCACCCGCGTTGGTTCCAAGCCACCAACACC
CTTTCCCACTAGCATTCTTCCACCGTCAGATCAAGAAATCTCCAAACATAATGTATTCGGATGAC
CCAACTTTGTCATATGACAGACCTGGGCACCTTCCCACTTCGAAT


Right flanking sequence: Indices 3034 -- 3328
TGAGCAACCTGAGCATCTCAAACAGCCTGAACAGTCTGAACCTGGACAACCCGAGCATCCCGAAC
ATTCGAGTCTGCCTTCAGGGCCAACTAGACGACCTCCAAGCACTACAATAATGCATGTATAATAT
GCCTATTGTGGACGCGTTATAGCTGATTGACCATCTTTCAGGGTTCTTGGACCTAGTAGGTCGGG
AAAGTCTTCGGTAGGAGTTAACTCAAGTCCTTATGTTCCACCTGCACTTTTAACCTTTTGAATAT
ATCATCCAGCTCATCAATATGGTCAGCGGCGACAG



Done.

rsol.ctg.fasta.s4077.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140265268

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1231
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28


Found at i:474 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140256497
    Period size: 9  Copynumber: 4.0  Consensus size: 9

       3988 TTGACTTTCA

                     
       3998 AAGTCCTCC
          1 AAGTCCTCC

                     
       4007 AAGTCCTCC
          1 AAGTCCTCC

                     
       4016 AAGTCCTCC
          1 AAGTCCTCC

                     
       4025 AAGTCCTCC
          1 AAGTCCTCC

       4034 GATGATGGTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   27  1.00

ACGTcount: A:0.22, C:0.44, G:0.11, T:0.22


Consensus pattern (9 bp):   
AAGTCCTCC

Left flanking sequence: Indices 3498 -- 3997
TTGAATTAGCTCGACATGTACTTGGCTCTCGGTGTCAAGGGTGCCATTACGACCAACGCAGGCTA
TCATGCACCCGAATGGCCGGATAGCCCCGCTTACGACTGGATTGTACGTCCGCAACACTCACTCT
CATTCGATTGGGCTAAAAACTTCGGCTCAGACGTTTGACGATGCCCGCAAAACGGGTGACAAAAT
TCTCCAAGAGAGCATTGCTTTCACGTATGTTTTTCCATTTGCACTTTGACTCGTACTCATTCTGC
TGGCAAAGGGATCCATCCAAAACAACCCTTGTTTTTATATTTCTGATGTCACGGTCAGGAGAAAG
TATGGCAATATGGCGACGCAAGTTTACTGTACCACCCAGCGAGCAATTGAGTCGAAACCTCGAGC
TCCGAAAGGTGGCTTATGAGGCTCAAAAGCGGGGCTTGGTCTATGATATTGATTTAACGTGAGTC
ACCTTGACTATACAACTGGGCTAAACGATGCTGATTTGACTTTCA


Right flanking sequence: Indices 4034 -- 4533
GATGATGGTTGTAGAGGAGGACGCCTGGATACTCGTAACTCCAGAGACCAAGGAAAAGAAGGGAC
GCAAGTTTCCATGGTTTAATATCGATTGGGGAAGCTTATGATGCTTGTATGGATGGATTTCATTG
AGTAACTTATCAATTATCTTCTTGTTTGACATGTATGCGAACGTTCAGTTATGATGTGGACGTCA
AATGATGTAACTAGATGTGTTTTTAACGTTGGTTGACTAGTGTCAACTGGAACAATATACTCTTA
CTCTGCAATATGATGCGGCATGTTTGTTTATATCTAACATACTATGCAATCTATGTGCATGTTGT
AGGGGACAAATAACAGAATGAAGGCTGAACTGGCAAGCCAATTAAACTCAAACGCAATAACTGAT
CAAATTGACCCCACTGACCCTTCCCCACGTGCGTCGTGTACTTGGCGTTCCTTGAACCAGGTCGG
AATATTTGGGCTCCAGCTCTCACAGTACACAACATAGCACTTGAC



Found at i:5922 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140266468
    Period size: 9  Copynumber: 5.3  Consensus size: 9

       1259 ACCTCCTGCA

                 *   
       1269 CCTTCGCCT
          1 CCTTCACCT

                 *   
       1278 CCTTCGCCT
          1 CCTTCACCT

                   * 
       1287 CCTTCACGT
          1 CCTTCACCT

                   * 
       1296 CCTTCACGT
          1 CCTTCACCT

                 *   
       1305 CCTTCTCCT
          1 CCTTCACCT

               
       1314 CCT
          1 CCT

       1317 GCTCCTCCTG


Statistics
Matches: 35,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   9   35  1.00

ACGTcount: A:0.04, C:0.52, G:0.08, T:0.35


Consensus pattern (9 bp):   
CCTTCACCT

Left flanking sequence: Indices 769 -- 1268
TGGCAGAGATTCTCTCTCTTGCTCGATCAACTTCCAGCGTCCTTCCAGAGTCGGAACCGGAACCG
ACATCGTCCGCGAGCGCCAAGACGCAGGAGCCCCAATCTGACAAAGGCAAGGGCAAAGGCAAGGG
GATCGAATCCGACGAGGAGAGCGACGAGCAGACTACCGAGGTGCCCGAGACCGAGTACGAGCAGT
CCGAGCCGATGGAGGATGTCGAGCAAGACCTTCCCGAATTGACCCCGATTCAGACGACGTTCATC
GGACTTCTGAATTCGGATGATCCCCGTGTCCGCCTATCTCTTGACCAAGCTCAAGAGCAATTGAC
CGCTATCGGCCAGGCGTTTCCTCAATATATCTTAGAGCAACTTCGAGGGAGAGAGAGTTCCGCGG
GCCCCATTGGTACGCTTGTTTTTCCTTTATAACTAAGTCACTTCGTTATTGATTTCCGTTGTCCC
CCAGCTGGCCCATCGCGGCCTGCACCGCCTCCTGCACCTCCTGCA


Right flanking sequence: Indices 1317 -- 1816
GCTCCTCCTGCTGGCTTGAGTCGCGTGCGTTCGCCCCCGACTCCGGTACTACCCATGTTTCCTGC
CAAGCGACAACGTCAGGGAACAAGCAGCCAGATTACTAGATCGACATCGGGCGAGGATATGCAGC
CGAGTGGTGTGGATGACGAGGGAGCATCCTCACAGGGCGGGGGACTCTCTCCGGAGTGGGATCAC
GATTCAGACGATGTCCCCAACGAGCAACTGCCGCGAGAGATGCTTGACCTTACGCTCGACATGGA
CGATATTCCCCCGCCGAACCAACAGGCTGGCCAGAAGCGAGCTCGTCTCATAAGCTCATCACCAG
GCGATCCGGCTAGCTCGAGTAGACAACATACGGGGGAAAGTTCTCAACCAGCCTCGAGTAGCTTC
CCGAACCCACCCACGCAAGTGCAAGATAGGGTGAGGCCAGAGAGTGACCCTAGCAATTTGACATC
GGAGGTCGATCGGCTTCGGCAAGCAATGGCTGCAGCAAGGCAGGG



Done.

rsol.ctg.fasta.s4475.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266470

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 10353
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27


Found at i:2233 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140266471
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       5049 TCTTGGGTTG

                     
       5059 TTCGTCTGC
          1 TTCGTCTGC

                     
       5068 TTCGTCTGC
          1 TTCGTCTGC

                   
       5077 TTCGTCT
          1 TTCGTCT

       5084 TTTGCGGCCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.32, G:0.20, T:0.48


Consensus pattern (9 bp):   
TTCGTCTGC

Left flanking sequence: Indices 4559 -- 5058
GATGAGCGTCGACAACTGACCTTGGTTTTCGCCTTTCCCTTTTTCGCGGGAGCTTTCTTGGCAGG
CTTTCCTTTAGCTGCCGGTTCGGATGCAGTAGCCTATAATAAGCAGGCCGAGTCAGCACAAATTA
GGAGATAATGAGTGCATGAGATCAAAGCCAAGAGCGGAACATGAGACGCGTCGCCGCAGCGAAAC
AAACGCATGGGATAGAAGCGGCCAACCCCAACAAGGAGCGGTTCTCGTTATCCGAACACTCAGCA
GTTCCCTCACGTTGGGCCAAGGTAAGAACCGATTGACTGGTGCTCCTCTCCGCCAAGATCCCGTA
CCATGGGCCGACAAAACAGAGCAAGGGAGAGCTTCGAGAGCGATCCAAGTTTTCGGGAGGTTGAT
ACGTGCAGCGCAAAGCGCCCATACATCAATCCAAAGACGGAAGAAACCAGCGAGAAAGTCCGACA
GCTACCGAGACTTACCTTCTTCGCTGCACCGCGTTTCTTGGGTTG


Right flanking sequence: Indices 5084 -- 5583
TTTGCGGCCTAGTCGAGAACAAACGAGTCAGTTTCTTACTCTCGATAACCGGAAAATCATGAAGA
ACTCACCGCTTTCTTGGCGGGTGCGCGTTTCCGCTTTGGCTTGTCTTCGTCTTCGGCGGCAGTGT
CATCGGTCTAGGTAGATCATCGCATCAGTGAGACACCATTCCAAGACATTCGAGAATGAAATCAA
GATGGATCGGAGATCTGCGCCTTAATGAAAGCGGTCTAGAGTCAGGGGAAATGAGCCGAATAAGG
CAGGCACCAGGCCGCGCAATCTCATGTGATCTCGAGGCCATACCCACAGCCTCCGGGAGACAAGA
GTCCGAGATTGATTGTTCCAAAAATGAAAGGGGGTTACTCGCCTTGGCCTTGGCCGGTGCCCTTT
TTTTCTTCGGCATGTCTTCCTCCGGTTCGTTGGCATCATCGGCATCCTATAACGCCGGAATCGAT
CGATAGGCAGTGTTGATAATACAATCGAATAAAAGTCATAGCCAA


Done.

rsol.ctg.fasta.s4477.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266472

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 17020
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26


Found at i:10293 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140266472
    Period size: 9  Copynumber: 4.3  Consensus size: 9

      10269 ACCCGATTCT

                     
      10279 GAAGATACG
          1 GAAGATACG

                     
      10288 GAAGATACG
          1 GAAGATACG

                  *  
      10297 GAAGATGCG
          1 GAAGATACG

                  *  
      10306 GAAGATGCG
          1 GAAGATACG

               
      10315 GAA
          1 GAA

      10318 TACTTCGCTT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   9   29  1.00

ACGTcount: A:0.41, C:0.10, G:0.38, T:0.10


Consensus pattern (9 bp):   
GAAGATACG

Left flanking sequence: Indices 9779 -- 10278
ACCCAGTATTGTCGGTCGTCATGAGTCTCCACGATCTGAAGTAGGGCATTCTAGATAACTTACTT
ACAAACTTTACTTACAAATAAATCAAGTTTATAGACACCGCCTGCAGTCGCGCGCGCATGGAGAT
CGAACCCGAACCGAATCTAAAAACTTCAGATGTATCCGTTAGGCTCACTGTCGTAGATGGACATC
CATTCAAATTAGTCAATGCTCCAGGGTTTGACAACCCACACAAAAGCAATCTCGAAGGATTCATG
GATATTGCACAATACCTGCAGAGCGGGTGAGCGCATTAATTACACTACCCAGATGCCATTAATTG
ATTAAATGACATTAGGGAAGTCAAGCCTGGTGTCAAAGGCATAGTATATGTGCACGACGTCTACG
ACACTCTCCATAGTAAAGCCCTTGCGGAGAATCTGAACGTATTATTCAGTGTGCTACTTGGTCAA
TCGGCTCTTCACCTTCTCACTATCCTGGTCGTTCAACCCGATTCT


Right flanking sequence: Indices 10318 -- 10817
TACTTCGCTTCGATTATTGCTGATATGCAAGCCCCCGACTCGGTGTTCTCCGTCGCCCACCAGGC
CGGTGCTCGCATTATTACTTCTGCGCTCAGTAAAGCCGTAGTTTTCGGCATACTCAAGGAATGCG
TCACCAATAACTTTGCGCAATTGCAAATTCAGCGCGACCGATCTTCCAATCTTCAGCAAGCCATT
GAACAGGCGCTAGGATATTCTGACCTCAATTCCGTCAAGGCCGCCTTGGCCCAGAAAGAGGAGTC
AACAACACAAAGGTTTCTCCCTGATCTTGTGGCTGCTCGGAAAAAGCAAGACACGACCCAGAAGA
CACTGGAACTGACTCGGCAAACACTGGCAGAGACTCAACGTAAAGCGGAGCGATATTATGCTATC
TACCAACAAATCGAAGGACAACTCGGGACAGAACAGAAACGCGTTCAAGAGATATCCCGCAAGCT
CCAAGAAACGCAAGCTGAATATTCCTCTCTCCGATCTCAGCTTCA



Found at i:14947 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140266472
    Period size: 9  Copynumber: 6.9  Consensus size: 9

      15005 CCCCGTCTGT

                      
      15015 CCTATCTGCC
          1 CCTA-CTGCC

                     *
      15025 CC-ATCTGCT
          1 CCTA-CTGCC

               *    *
      15034 CCTTCTGCT
          1 CCTACTGCC

                    *
      15043 CCTACTGCT
          1 CCTACTGCC

                     
      15052 CCTACTGCC
          1 CCTACTGCC

                     
      15061 CCTACTGCC
          1 CCTACTGCC

                    
      15070 CCTACTGC
          1 CCTACTGC

      15078 TTCCGCCCGA


Statistics
Matches: 48,  Mismatches: 4, Indels: 3
        0.87            0.07        0.05

Matches are distributed among these distances:
   9   46  0.96
  10    2  0.04

ACGTcount: A:0.10, C:0.49, G:0.11, T:0.30


Consensus pattern (9 bp):   
CCTACTGCC

Left flanking sequence: Indices 14515 -- 15014
CGCTGGGCGCTATTACTGTGTCTCGATTTACTAGAGGCGAACCACGGCTGAAACCAGCACATCTC
GCTTTCGTACTTGAAATACTCGTAGGTCTGCCAAATGACAAACGAGAATATGCCTGCCCCTACAA
CTGGCTTGGCGCGACGCTCGGGTGTCACTGGTGTGAGTTTTCGTAGTGGTAATATCTCAAGCGTA
GCCACTTATGCAAATTTATGCAAATGGCATCAGGCGCGCTCAGACAGGGACCAGCCCGCTCCCCA
TCCAGATGCAGCTCAGGCCGCGACACAAAGGTCTTCTACTCCCACATCCGGTGCTCGTACGCAGC
GCCCTTCACATAAAACACCTTCAAAGTCGGCTACTACGGACCACTCAATGCCGTCAGCCAAACAA
ACCGCACCACCCTCTGCTCCTCCTGGTCTTCCCGCTCCCCCTGGTCTTCCCGTTCCTCCTGGTCT
TCCTCCTGGTCTTTCTGACCCTTCGATTCATTCTGCCCCGTCTGT


Right flanking sequence: Indices 15078 -- 15577
TTCCGCCCGACTGTCTCCCCTCAACGACTGGGAGGCTATTAGCAAGCCAAACGCATCAAACGCAT
CAATCGAAGAATTGCAGGGGGAAATCGCAAAACTACAAAAAACGGTTGAACAGAAAGAAGCAGCG
ATCAAAAAATGCCGCGAGGAACTCTTTTATTATCAAAAAAAGTCCGATCATCTCGAGAGTGACTC
TTATCGCCAAGAAGTCTTGTCTATCCGCCGGCATCTACAAGTAGACGAACCATGTGAGCCATGGG
ATATCACCAAGAAGTTTGGCGACATTGTGAGGAAGGTTGAGGACATCTCTCGCGACCTGGGTGAC
GCATTGGGTCCCCTACCTTTCATAGAAAAACCGACGACTCTCAGCCTTTTAACGCAGCTTCTAGG
GGAATCCAAAGAACCTCTATCGGCCGCATCACCAACGGCCGATCTCGATGTCGAAGACTTTATCG
ACTTTGGTTGCCGAGCGTTGATCAATCAAGCATTGTACACTAGCA


Done.

rsol.ctg.fasta.s4485.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266480

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 12459
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24


Found at i:1538 original size:3 final size:3

*************Found a new SSR********************
 Sequences: ctg1113140266515
    Period size: 9  Copynumber: 2.9  Consensus size: 9

      15856 ATTTATGTGC

                     
      15866 TTTTGTTTG
          1 TTTTGTTTG

                     
      15875 TTTTGTTTG
          1 TTTTGTTTG

                    
      15884 TTTTGTTT
          1 TTTTGTTT

      15892 TGGATAAGTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81


Consensus pattern (9 bp):   
TTTTGTTTG

Left flanking sequence: Indices 15366 -- 15865
GACGGGACGTTTGCCGGACGACATAGTATCACCCACCAACCTCTGCTCGCCCCTCCGGCTAGAAC
CAAGACCGTACGGATTATCGAAGCCGGACCGTCGATTGAGCGGGAAACGAGAGCGACGTTTCAGC
CTGTGCTTCCGCCGGTACCTTCACCCAGGGCTGGTACTATGACTAAAATGAAACCTGACGGTGGA
GCCTATATCGGTGCGAGGATGCGAGTCAAGAGAAAGGAAGGTGTTGAAGCGGGGCCGTCTGCTCG
CGTATGGTTCTTGATCGGATTTATTCTCGGGCCTTGGTGTTGGGTCGTCGGCGGATGGGTGGTCC
AGCAAGGTCAACCCATGGCCACGCTGGATGTCGAAAAGGGCGGGAGGTCGCTGGAAAGTGCGCAA
TGGGTCAAGCGGTGTAGGATTGCGAGTGTGGTCAGTGGCGCGGTAGTGTTTTCGGGTGCGGTTGT
GGCTGTTGTGTGGGCTGTGATCGGCGCGAGGTAGTATTTATGTGC


Right flanking sequence: Indices 15892 -- 16391
TGGATAAGTCTATATTGTGCATGTGTTTATGTAGTATGATGTATTGGAATGCCGCATATAATATT
GCTATTTTTTCAACTCGATGAAATGAACGAACGCTGACCGTTTTTAGCCACATCATTTTGCTGAC
AAGTCCATAGATTTGAGCCTACCGCCGAAACCCTTGAACTCTTGAAATCGCCTTACCCCAACAGT
ACTTTATAACATTCAGCGATTTTGGCGCAGGAAACATGCGCAGATGGTGAACCGGAAAGTCATAT
ATTCCGTAACACCATGCGCACGTATATGCACGTACTGTATACCCAACACCCAGTTTATCTCTTTA
TGTAACGTGATGTGCCCGATCTTTTTTCAGGCTCAAATAAACACATAGCAACAAAGCACGTTCAG
CATTATCATGTAATTTATGCTGTATGTAGGGTCTGCCACATACTAATGGTTGTTTCATTGTTGTA
TTGAACGTTTATCACCGCTCTATAAACCATTTCCTGACCACTATC


Done.

rsol.ctg.fasta.s4522.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266517

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 6967
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23


Found at i:6585 original size:10 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140266530
    Period size: 9  Copynumber: 3.3  Consensus size: 9

         60 TGGATGCACC

                     
         70 ACCTCCGCA
          1 ACCTCCGCA

                     
         79 ACCTCCGCA
          1 ACCTCCGCA

                     
         88 ACCTCCGCA
          1 ACCTCCGCA

               
         97 ACC
          1 ACC

        100 ACCTGCGGGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.23, C:0.57, G:0.10, T:0.10


Consensus pattern (9 bp):   
ACCTCCGCA

Left flanking sequence: Indices 1 -- 69
CACTGTCCCAACGACCGACTCGGAGGCTCCACCAGTCGTCCTATTTTGCCGTTTGATTATGGATG
CACC


Right flanking sequence: Indices 100 -- 599
ACCTGCGGGAAACCCGCTTCCTAATAACCCAAACGGAGCTACCGAAGGCGAGAATGGAGTCGCAC
CGTTGTTAAAGTCATTCAATGGAGTTCTGAGGTAACAAACGCATGACATGTAAGCCTGCCGGATG
CTTTCTTTGCTTCATCATATCATAAATCTCACATTTATGAGTATAGTTTTGCGTCGGAGCCGGCG
GAGACCGCTGAACTTATAGTTGGTTGGGCTGTGCACAAACCATTAGATCGTTGCGCACGTCTTTG
TCAATGGAGCAGCTCTGATCATGTATTCCCACCCACCTTCCATATCTTGCAAATAAAAACTGAAC
CTCCACCACACTCTGGACAGCCCTAGAGATGTCCTAGAGATGGTTACCCATCTTGGAGAACTCAA
CTAAGTCGGTGACGAGGGGTCGGCCTCACAGTGACTATAAAAAGTTTTTTTTTAAAAAAAAGAAC
GGGACATGCACACCTCTCCCCAAACTCATCTAACAGTACTAGTTG


Done.

rsol.ctg.fasta.s4537.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266532

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 17624
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23


Found at i:810 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140266581
    Period size: 9  Copynumber: 3.0  Consensus size: 9

       3382 TTAGGGGGAA

                     
       3392 TCGCTCCTG
          1 TCGCTCCTG

                     
       3401 TCGCTCCTG
          1 TCGCTCCTG

                     
       3410 TCGCTCCTG
          1 TCGCTCCTG

       3419 GAGTGGCTTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.00, C:0.44, G:0.22, T:0.33


Consensus pattern (9 bp):   
TCGCTCCTG

Left flanking sequence: Indices 2892 -- 3391
GACGCATTATCCCACCACAGATTTCCTGTTAAGAATACTGTTGATTTCACATAAACGTGCATGAT
AAGTAAGGAAGGTATATGCGTACGGCTCTGAATGCTCTAAGGGGCGTTGAGACATAGGAAATGAG
GAATGTATAAGTACGAACCCAATTCACAAAATCGCGGCCACCTAATCATATAAATACATAATTAC
CATGTATGGATAGCGCCTTAGTTATGATAAGGAATGCGCTAATCCCCACGCTTAACCCTACGTGA
TTTCTCATTGTTATACACACAAATGTACCCTGGATATCTCTACGTATTCTCATATGTATTATACC
TTACATTACTCACTGAGAAGTGGCGTTGAGAGAGCAACACACAGGAACGGCTTTAGGCTAAGCTC
CATCAAACGTCGGCTGATCTCGTGGGGATGGAGCGGAGGCGGTGGCTCAACTAAGTAGCTACCTC
TCCAACAAGCGTCTGTTGTATTTACGATGCACACATTAGGGGGAA


Right flanking sequence: Indices 3419 -- 3918
GAGTGGCTTCGGGGAGCAATTTGTCATCTTTAAGCGCCGGCGCTTAGTCGCTCGCAGAAGCTCCC
GCGCTCGCGTCCCTCTCGTCACTGGTTCCCTCTGACTAATGTGCGCTACAATAAATACAATACTT
AGTAGAAATATTTATTGCAGTGTATGATCACATAAAACTAGCCGAAATACATGATTAAGCCAGAG
AACAATTATAATCTTTGATATATCTAGCGTAATACCCAAGTATCGTAATTGTGACTATGTTAGTT
GGATAGAGCAGAATTGATTACCTAAGTTCGCACTTGAACGCTCGTTGATATCTTATGTTATCACC
CTAGCGATTGTTTGGAGCGCATGTATATATTCAGTTTTAGACATAATAGACGTGTGTGCCAACTT
ATATTCGTATTAATAACAAAGAGGGGATTGTACATGACAAGGCTTTTAGGATGACACAAGTGCTG
CCTCATACCATTGAAAAGCTACTGCTCCCTTCCAAGTGTACAACC



Found at i:5074 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140266584
    Period size: 9  Copynumber: 3.2  Consensus size: 9

      10838 TGCTCAACAG

                     
      10848 CCTCAGCAA
          1 CCTCAGCAA

                     
      10857 CCTCAGCAA
          1 CCTCAGCAA

                     
      10866 CCTCAGCAA
          1 CCTCAGCAA

              
      10875 CC
          1 CC

      10877 ACCTTGCCCT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.31, C:0.48, G:0.10, T:0.10


Consensus pattern (9 bp):   
CCTCAGCAA

Left flanking sequence: Indices 10348 -- 10847
ACGTCGAAACTGGACAGTACGCAAGCGTAGACGGTGCTCACAACAGTAGCAAACTCCACGCGTCT
GGCAACCCGTCTACGTGGTATCTCCCACAGGAGGGAGATGGCTCGGTCTTGTAAGCGATTTCTAA
TCAAAGCCTATGACGCTTCTAAAAGATATTCGCCTAGTATTACCCTCGCTGGCGGCAACTATGTG
TGTGATCTTGATATGGGCAAGGATGATAACGGCACGACCGTAAGCTCCCACTAGTGTTTATTATA
TAAGTCTTACTGATATGTTTTACTAGATCCACTTGTGGGAAAAGACTGGGGCAAAGCAACAGAAA
TGGTTCTTTGAAAAGATCAAGTAAGTCTGTAAAAGACTATGGATGATCTGATGATCTGATGAGCT
GGCCCAGCGACAACTCCGGACAGTACCAACAGCAGCAACAGCAGCCATACCAGCCCCCTGCCCAA
CAACCCTACCAACCTCCTCAGCAGCAACAACCTCCTGCTCAACAG


Right flanking sequence: Indices 10877 -- 11376
ACCTTGCCCTGTTTCTCCCGGCACTTACTTCCTGAAGAATGTCAAGACTGGCACCGTGATCGACT
TGAGCGGCGGTGCGGCCGACGAAGGCGTCGACGTCTTCGGATATGACCACAACGGTGGAAACAAC
CAGAAGGTTCGCAATGCCACATTATTTTATCTGACATTGTTCTAATTGATACGTGTAGTGGCAAC
TCCAACCTTCGGGCCACGGCCAGAACATGACTCTCCGTAATGTCCAGACCAACACTTATGCCTCA
TTCCCGGGCCAGAGCTTCGCCCAAGGCGTTCTGGTCAAGAGTTCTCATCAAGCACAGGAGTACAC
TATCAGCTCTGCGGACCGTGGCTTCTAGTAAGGATTTTTTGCTCAGATGCGCAATACTTTTTTTC
ACTAATGACCGACACTACAGCATTTCACCCACCCAGCAACCCGGTTACGTCCTCGATCTGGTTCA
TGGATCCGACAAGAACGGAACCAAGGTTCGTGGTAATTTCCGTAT


Done.

rsol.ctg.fasta.s459.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140256576

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1290
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26


Found at i:996 original size:67 final size:67

*************Found a new SSR********************
 Sequences: ctg1113140266650
    Period size: 9  Copynumber: 3.7  Consensus size: 9

       3561 CTGCCATCCC

                     
       3571 GCCACGCCA
          1 GCCACGCCA

            *        
       3580 ACCACGCCA
          1 GCCACGCCA

                     
       3589 GCCACGCCA
          1 GCCACGCCA

                  
       3598 GCCACG
          1 GCCACG

       3604 TCCTTCAGCA


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   9   22  1.00

ACGTcount: A:0.24, C:0.55, G:0.21, T:0.00


Consensus pattern (9 bp):   
GCCACGCCA

Left flanking sequence: Indices 3071 -- 3570
TCACGCATTGTACCTCCTTCTAGGTTTGCCCCTTTATGGAATGAACGGGATCTCTATGAAGTAGA
CAATGAGGGGCCGAGTATTGGCAAGTTCACTACGGACAACGATCTTTTTTTTCTTGAATCGGCCT
CACGCAGAAAATATCCTTTGCGAACATTTGTCTCTTGTGAAACAACACAGAGACCCCCGCCTCCA
CCACTAATGGACCGCAATAATGACCGAGACTTGCCCAAAAAGACGGCGTCTGGGTTTCGCAGATT
CAAAGGGAAAAGAAGGAGGAAGGGTAGGCCAACCAACGAAGTCAAAAGACCTCGGCCTCTTCCAG
ACGATCCTCCAAGACCAGCGCGTGCACAGTAACTCCACTATCCCACTTAGACATTGACGCTCACT
GATCCCAGGAATAGCCCACAAGTTCCAAGAAGGAGCATATTTCATGCACCGACTCCCAAAATCAA
AGCCAAATTACCCGAAAAGCGTAGCCGCGCAAAAACTGCCATCCC


Right flanking sequence: Indices 3604 -- 4103
TCCTTCAGCAATCCAGTCAAGCCCAGTGTACGATCTTGAGCTCAGTTTAGCCAAGATCATAACTG
ACTCTCAACCAGGCGATTTAAGCGCGCTCGTAAGATTGCATTCGATCCACCTCATGTGCATGTTG
CAACCCCAACCCCACCGCCGGACAATCGTGGTGCCGGACAGGCTTTAGATGTGGTGGCACAAGGT
CTATTTCGTTTGGACCCTGCTCTCGCCCGCTACAGCCTACGGTCAACTCCCTTGTTTCTGGCACG
TAATCTTCGTGACGGCTGGTCGGGCAAGGTGTGGTCGTGGGATAGGGCAGGAACGCAGCAGGATT
TGGGTAACTCATTACTCCCATTTTACTTGGACAAATTTAATATATGTGTTTTACAGCGACTCGAC
CGAAAGGCCAAGATCCACAAATCTCTCTCCAGCGGCTAGAAAATTGGATAGCCAGGGCAACTCGC
CAAGTTTCCCGATATACGCCAGCTACCATCACACAACCGTAAGTG


Done.

rsol.ctg.fasta.s4658.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266653

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 5730
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26


Found at i:5352 original size:8 final size:8

*************Found a new SSR********************
 Sequences: ctg1113140266678
    Period size: 9  Copynumber: 7.9  Consensus size: 9

       3347 ACTATCCCCG

                     
       3357 CCATCCTCA
          1 CCATCCTCA

                     
       3366 CCATCCTCA
          1 CCATCCTCA

                     
       3375 CCATCCTCA
          1 CCATCCTCA

                     
       3384 CCATCCTCA
          1 CCATCCTCA

                     
       3393 CCATCCTCA
          1 CCATCCTCA

                     
       3402 CCATCCTCA
          1 CCATCCTCA

                     
       3411 CCATCCTCA
          1 CCATCCTCA

                    
       3420 CCATCCTC
          1 CCATCCTC

       3428 TCCTCCTCCT


Statistics
Matches: 62,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   62  1.00

ACGTcount: A:0.21, C:0.56, G:0.00, T:0.23


Consensus pattern (9 bp):   
CCATCCTCA

Left flanking sequence: Indices 2857 -- 3356
GTAGGGTAAACGAAGATGTTGAGCCAACTGTACTATCTCGTCTCCAGTGAGGATAAAGCCACTAG
TGTATCTGAAGCGTAGGTAGTCATACATTACTAGTGATTGACCAACTTGTTAGGAGAATCGCACA
TATTAAGGTATATTATTAGACTACTTACTCTCACAGCGAGACTTTGATTGTGGATAAAGGGGGTC
AATATGGGACTGGAGTGTGCTCGTGGGGCAGCCAGGAGCTGTCAGATCTAAACGAGCTAGTCCCG
AGGCCTTGATTGCTCATGATCGAGCGACAGAGCCACGGCGCCTATTCTCGGGGGTTCTGTGCTGT
ATGCTCAATCATTTTATGGTAAATTACATTATTTCATTTCAATCGTGATCAACGACAGGACCGTC
TCTCGGGAGAGCGGACCTGCTCCCGAGTCTTTCCAGAGTTCTTTCAATTCTCAAGTTCAGAATCG
CTTTCTCCGCCATACCCACTATCCCCACTACCTTCACTATCCCCG


Right flanking sequence: Indices 3428 -- 3927
TCCTCCTCCTCCTCATCATCATCATCATCGTCGCTAAACTCTCCCGCATGCTTCTCACAGAACTC
CGAAAGAGTCATAAACTTGCGCGCACCAAAACCAGGGGGAAGCCCATTCCGGAATACCGTCGGAG
GTGGAGATATTTTTATGATAGTCCATGGGTATTCTTTATTGGGGTACGTCTGGAACCGGGTAAGA
TACTCCTTGGGCACTCCAGTCGCCATCACCGCGACTTTGACCTTGTTCGTGTTTTCATGCGTAAG
AGGATCAATAACCTCGTTTTTGGGTCCTCGCCGCGTGGGTATCATCCACAGAGTTTCGGGGGATT
CATTCAATTGATCAATGGGCTTTTCTTCGTAGAGCGAAACGGTTTGAAGGCTGAACGGCTCGAGA
AGCTCGTCACAGGACAACATGTATCCGCTAATCAACCACGCAGCTTCAGAAGTGTCCTCGGGGTG
CGGCAAGTCAAGATGCTGGGCAAGCTCGACTACCTCGTCTCCAGT



Done.

rsol.ctg.fasta.s4684.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266679

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 8561
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26


Found at i:7708 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140266714
    Period size: 9  Copynumber: 7.9  Consensus size: 9

       3642 ATGAGAGCTA

                     
       3652 GTTGAACTG
          1 GTTGAACTG

             *       
       3661 GCTGAACTG
          1 GTTGAACTG

                     
       3670 GTTGAACTG
          1 GTTGAACTG

                     
       3679 GTTGAACTG
          1 GTTGAACTG

             *    *  
       3688 GCTGAATTG
          1 GTTGAACTG

                     
       3697 GTTGAACTG
          1 GTTGAACTG

                     
       3706 GTTGAACTG
          1 GTTGAACTG

                    
       3715 GTTGAACT
          1 GTTGAACT

       3723 AGTTTCTGTA


Statistics
Matches: 56,  Mismatches: 6, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   9   56  1.00

ACGTcount: A:0.23, C:0.13, G:0.32, T:0.32


Consensus pattern (9 bp):   
GTTGAACTG

Left flanking sequence: Indices 3152 -- 3651
TTAAGGCGACCGGTACTACATATGAGCACTCGGCTCTTTTAGCGAGGTAGGAATGTTACAGCGTG
GATCGGACAACACAGATAAGACACACAAATCAGTATATGACAAACCGAACCGTTACAACCGCAGG
GAACAAGTATTGAAGAGCAACGCGTGCATACACTCGCCCTTTTAGTAGGTCATTTAACAATTATG
AATTAACGCTTGAGGGATCACGAGATAATATGTTTATGTATTAATTGATTAACTTTGTCATATAT
TTAGATGATACAAGGGTATTATGGGTAAGGGGAGCTTTGGCAACCCAAGCACTAGCAAAATCGCT
TGGCATCATATGGGTATATCGTCAACACACTACAAAACACGACATTATTACAACAAGCATGAGTG
CCAAAAGGTCACAAGAACGATTGGGTATAACAGCACTGATTATCACGTATGGTGGCGTGGTGGTA
GCTGGAGTAGCCGTCGACAGGGATGATGTGTCCACATGAGAGCTA


Right flanking sequence: Indices 3723 -- 4222
AGTTTCTGTAGTAGACGAAGTCGTGGGGGTATACGAGGTAATGGTCGAGCTTGTGATCGTCGCAG
TCGACGTGGGCACGGTTGACGAAAGACTGGTCGAGCTAGGTTGTGTGACCTGACTACCAATGTAC
TGTCGACCGAGGTCGTTGATTACGCCAGACGGGTCCATTAATGCAGTAAGCTGAGATGCAAGTAT
CGTTGGTTTGATATGACACTGAAATGAAACTTGATTTAGACGCACCTGGTTGACGTTGTCTGGTA
ACGACGCCATAGCTCCGAACCAGGCGTAGCGTTCTACCCAGGGAGTTTGGTCCATGAAGGTCTGG
GTTGTGTTGAGAAACTGTACGATCTCGTCATACGTGCATTGTGCACCGTTGACCTATCGATATGT
TAGTCCGCCATGTAAAAAAAGCATACACAATGCCAACTTACAAAGTTCTGACACGAGTATTCTGT
TATCCAAATAGGACGCTGAAAGGTGGTATGGAAATCTTCCAGATA



Found at i:5059 original size:8 final size:8

*************Found a new SSR********************
 Sequences: ctg1113140266727
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       7266 CCTGATCGGA

                     
       7276 TTAGTTGGG
          1 TTAGTTGGG

                     
       7285 TTAGTTGGG
          1 TTAGTTGGG

                   
       7294 TTAGTTG
          1 TTAGTTG

       7301 ATAACATGAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.12, C:0.00, G:0.40, T:0.48


Consensus pattern (9 bp):   
TTAGTTGGG

Left flanking sequence: Indices 6776 -- 7275
AGCTTATTGATGGTCAGGCTACTGTGCCAGCCGTTCTTGACGCAATGGGGCAGCATGACTGGGTC
CACCTTGCCTGTCATGCTCACCAGAACGTTGGCGACCCGTCAAGGAGCGGGTTCTTCCTGCAGCA
GGGCACCCTAGATCTGGCTGAAATAAGCAGACGATCGTTCAAAGGCAAGGGTCTCGCATTCCTAT
CCGCTTGTCAGACTGCGATGGGCGATGAGAGACTGGCGGATGAAGCGGTACACCTTGCATCGGGA
ATGCTAATGGCCGGCTATTCGAGTGTAATTGCGACGATGTGGTCTGTTCATGATGAGGACGCGCC
GGTAGTGGCTGACAAGGTGTATGCGCAGCTGATGAAGGACAAGAGGATAGGCAATGGTGAAGCAG
GGAGAGCGCTGCACAATGCAGTAGCAATTTTGCGTGAGGCGATCGGGGAACAAAAGTTCGAACGA
TGGGTACCTTATATTCATATTGGATCATAGGTCAACCTGATCGGA


Right flanking sequence: Indices 7301 -- 7800
ATAACATGATGCAATCCGGGCGTCATTCGCTGGGTAGTTGTTCATGTGGGTGGTGGGCATTTAAT
TCATCCGAACATCCTGTACAATATAGCCACAAGGATGTTGCACGCGTCAGAGATACAAGAAACTC
TAATGAGTTAAGTAGTCAACCAAGGTTATGACTATATACAGTGGGCCACAGATCAAGTGGAACAC
GTGTCAAGGGAACCAGAGTAGATACAGCCAAAAATTTCAATTGCCTGATCGACGCACGAACGCAC
GAACGCACTTTGGTTGGCTTCGTGGATAGGTCGAAATTGGTAACTGAGGGTGAATGCCGTGACGA
TTTTGGTTGAGTACTGCCCCACATCTCGGATTTTTGACCGCTTTGTTTTCTCAGGTGAACTATAT
CATTGTGTGCGCATGCTTGCGAGCGTTGGTATATGCATATCTAATGCCCAATACGCCTCCTTGGT
GTGCTCCTGCCTTTTCTCGCTGTTCCCCCTATTTGCAATTTCTTT


Done.

rsol.ctg.fasta.s4733.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266728

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 4222
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27


Found at i:472 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140266773
    Period size: 9  Copynumber: 4.4  Consensus size: 9

       4499 GGCACGGGCG

                  *  
       4509 GGGGCGACT
          1 GGGGCGGCT

               *     
       4518 GGGACGGCT
          1 GGGGCGGCT

                     
       4527 -GGGCGGCT
          1 GGGGCGGCT

                     
       4535 GGGGCGGCT
          1 GGGGCGGCT

                
       4544 GGGG
          1 GGGG

       4548 TAGCTGGAGC


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
   8    7  0.27
   9   19  0.73

ACGTcount: A:0.05, C:0.21, G:0.64, T:0.10


Consensus pattern (9 bp):   
GGGGCGGCT

Left flanking sequence: Indices 4009 -- 4508
TCGAGTTCTCTGCAAACAATATATATCTTAGTACATATCGTAATCAGGTCAGCGAAGATGATCAC
ATACGCATTCTTGGCATCTTCATCAGCAAATTGGCTAGGGGTGGCGAGAGCACGTTTGCTGAAAC
TGGGGATGAGCCTTTTCTCAAGCTCACTGTAAAAGCTAGGTGAGTGGCTGCAACCACCAGCTATC
CAAGGAGCGAACTTACGTATTTTTAACATTCGTATCGGAGAAGTCCACATGTTTGGCAACAGAGC
GGAGACCGAGGAGGCCTTTCAGGGTTCCAGCAATCCCACCAGCGTCATCACCGCCAGCACTAGGG
TTGGTTAGTTACAGAGTATATGCGTTCATCGCTAAATCTAATACTCACGCAGCGCCCTTTTTGGC
TCCGGCTCCTTTGGGTTTTTTGGCAGCGGGGGTGGCGGGAGCAGCACGAGCAGGTGCAGGTGCAG
GGGCGCGAGCTGGTGCAGGGGCGCGAGCTGGTGACGGCACGGGCG


Right flanking sequence: Indices 4548 -- 5047
TAGCTGGAGCAGCAGGAGAAACAGGAGCAACAAGCGCAGGGGCGGCGGGAGTAACAGGGGCGACG
GGACCAGGTGCGACAGGTGCAGGTGCAATAAGAGCAGGAGCGGCAGGAGCAGGAGCAGGTGACAG
GGGGGAGCGGCGGGAACAGGAGCGGCTGGAGCAGGAGCAACTGGAGCTGGAGCAGCTGGAGCCGG
AGCAGGAGCCGGAGCAGCCGGGGTAGCAGCGAAAACGGCACAGGAGCCGAAAGGACCGGCGGGCG
TGCTATTGCGGCAACGGACAATACAAGCGTCCCCGTTCGGACCTGCAGCACATGTCATACCACTG
CAAAATAGAATTAAAACAAGATGTATGCAAGTTCAGATATTGTTCTTACTCAGGCATCTGAACGT
TAAGGGGGAAATCTTTAGCGGTAGCCAAGGAAAGACCGAGAAGTGCACCGGGGACGTTCTTGGTG
ACCTGGGCGTCCTGCCATGTGTTACCGCCATCGGCAGACATATCG



Found at i:4736 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140266777
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       3030 TACGCTATAT

                     
       3040 TTGATCCTG
          1 TTGATCCTG

                     
       3049 TTGATCCTG
          1 TTGATCCTG

                   
       3058 TTGATCC
          1 TTGATCC

       3065 ATTCGATCCC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.12, C:0.24, G:0.20, T:0.44


Consensus pattern (9 bp):   
TTGATCCTG

Left flanking sequence: Indices 2540 -- 3039
AGCCAAACCTAAGCAAACCGGGTCTCTGTGTCCCCTCCACCACGTCGATCTGTTCAGTGATTCAC
CCATCATCTCCGAATTACAAGATACTTGAAGCTATTAAGTTTATCAATTCCGTTTCATGTTTCGT
TCAAATGTAAGCCCAGATTAGAGACCTATCATTACGACTAACAGACTCACCCCTGTGGACGTTTC
AACCCGTTAGGAGTCAAGTGTGCCCACCATTCGACAATGGGAGGAAGCCGGCGCTTCGCTTTTCT
TTGCACTCAGAAAGTACCTTGACCTCTGTATATTACTCGGCCCGGATTCCTAGAAGGATGGTACT
CCTCCGAAAGCTCTGGCCACTCGAATCGACTCCGCGTTGGAAAAATTATACGCCCAATTGGATCA
GCAAATCGATCAGTCTCGGCTGATTCTTGCTCGAACTCGGAACCAAGTGCTATCTCCGATATCCT
GTTTCCCTAGCGAAGTCCTATCTGAAATATTTGCCTACGCTATAT


Right flanking sequence: Indices 3065 -- 3564
ATTCGATCCCGCCTCGATGCAGGACAGTCTAGTGACCATGTACCAATCACTTCATAGCTTGCTTG
GTGTCTGCTCGACTTGGAGAAACATTGCTCTAGCGCGGGGTTTATTCTGGTCAATTATTCCAATT
ATGGAGTACCCAGGCTCGGACCTTATGGTTCGTAACCCAGGGAAGCCACTTTCCACCAGCCTCAG
TCTGGAAAGGTCCGGGAATGCAGACCTGCACCTTGCCACCATTGCCTCTGAACGCGACCGTGACC
TAGACTTCACCAAATATGCTTCACGATTTAGATCAATCAACATCTTGTCCGGATCGATATACACA
ATTGGCGAGCTCCTGAGTAATTTTGTTAAATCAGGCTCCGATTTGCAGGTGTCGAGTCTATTCCT
TTGCCACAAGATCAACCTACCTTCATCTCAAATCCCACCTCTGTGTACTTCTCTCTCTTCACTTC
GCTCTTTCAAATATATCAACTTTGAAGACCTCCTAGAATCGATCT


Done.

rsol.ctg.fasta.s4785.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266780

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 8046
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25


Found at i:3872 original size:13 final size:13

*************Found a new SSR********************
 Sequences: ctg1113140266781
    Period size: 9  Copynumber: 3.4  Consensus size: 9

       3177 GATTTTCTTG

                 *   
       3187 GGAAACGAA
          1 GGAAATGAA

                     
       3196 GGAAATGAA
          1 GGAAATGAA

                     
       3205 GGAAATGAA
          1 GGAAATGAA

                
       3214 GGAA
          1 GGAA

       3218 TGTCTGTTAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.55, C:0.03, G:0.35, T:0.06


Consensus pattern (9 bp):   
GGAAATGAA

Left flanking sequence: Indices 2687 -- 3186
AAGTCCTGCAAGTACGAGAGCTACAAAATGCGGGCGCATATATAACACGAGTGACGATGGAAGTG
TGTGCGTGTGGGTAAAGTCTTGCCTGGCGAAAGCCATAAATAATCACAAGTGAGCCATCTCAGGT
TATTACTTGTAGGGCATAATTTGGCCGGACATAATCCCGTTGCGAAGATCCCCCAGGTTTCAATT
GTGGTGTAAGATCGCATTAGTTCTGAAGATGTACGCATGATATCCCATCAGATATAGAATGCTAC
ACATTTACGCAGGCAGTGCATAAACAACAGAGAGTCTCTCCGATCTTGTCAAAGTCTACATCGCA
GACACGAGACGTATAGCACATTGCCATTGTACGAAAGAGACGAATAACCGCAATAGAGAAGCCTA
GGCCCGGAGTAGTCGGTATTTGTGCCTTGAATAATATGAAAAAGTTATAATTAGGCGCAACATGC
GGGCGCTTTCAGTAAACGAAGCCTGGGACACAAATGATTTTCTTG


Right flanking sequence: Indices 3218 -- 3717
TGTCTGTTATATATAACTGGCCATTGTCATTGTCATGCATATGGTCTCGAGCCCCACAATCGAGT
AGTTAATCTTTTGAACCACACATTGATTGCTATAGGTCTTGTCCATACGAAAGGTCCTACAAGGT
GTACATGCGTATGGGTAACCTAGACCAGGCTGCAAGCAACGCAAGAAAAAGACCAGTAAAACAAA
TAACGAAAAAGAAAAAGATACAAAAGAAAGTGCTCAAGCTCATCTGAACCACTATAGTTCCCTGG
TAATCACCCCCAGCGGCCACTCGGACTGCATCTCCTAATGACATCTGCGTAGGAGGTGTGGAAGG
GGACATGGGAGGGGGCATGGTCTGGCCATCTCCCGTACGCCACCCTCCATCCGCTTGCAGGTAAA
CTTCCTCTGTAGTCGCTGGCGCGCGCCTAAGAACACTCTCAAAATACCTACAAACATGCGCGTGT
TGGAGCAAGTCCTGGCATAATAAACCAAGAACTCACAAATCTATT



Found at i:19772 original size:3 final size:3

*************Found a new SSR********************
 Sequences: ctg1113140266783
    Period size: 9  Copynumber: 6.1  Consensus size: 9

      10896 CAGGCTGAGG

                     
      10906 AAAAGGAGA
          1 AAAAGGAGA

                     
      10915 AAAAGGAG-
          1 AAAAGGAGA

                 *   
      10923 -AAAGAAGA
          1 AAAAGGAGA

                     
      10931 AAAA-GAGA
          1 AAAAGGAGA

                     
      10939 AAAAGGAGA
          1 AAAAGGAGA

                     
      10948 AAAAGGAGA
          1 AAAAGGAGA

             
      10957 A
          1 A

      10958 GCGTGAAAAG


Statistics
Matches: 38,  Mismatches: 2, Indels: 6
        0.83            0.04        0.13

Matches are distributed among these distances:
   7    6  0.16
   8    7  0.18
   9   25  0.66

ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00


Consensus pattern (9 bp):   
AAAAGGAGA

Left flanking sequence: Indices 10406 -- 10905
TGGGTCGACTTCAAGAACGCATCGAGGTGGCAAGCCGAGGAGATCTTCAAGAACTTCTTCCCCTG
CAAACCTCCTACTGAGCCTGAGGAAGAACCCAAGTCCGATGACCCCGAGACGGCCAAAGCCCAGG
CTAAACGTCGTCTCCGTGATACGCGCGCTCTGGTTCCTCGTCTCGATGTCGAGGAGATTGCCGAA
TTGGCCAAACGTTTCGCGCAGCATATTCCCGAGGACGAGTTGAGCGTCGCTAGCCTTCAGGGTTA
CTTGCTGAGGAACAAGACCCGTCCTCGTGAGTGCGTTGAAGAGGTTGCTGGTGAGTTTTATTTCT
TATTTTACTAAGGATGTCCCACTAACGTTCAAATCCAGACTGGATTATCAAGGAGCGTGACACCA
AGGCCCGCCTCAAGCGTGAGAAGGAAGAGAAGGAGCGACTCGAGAAGGAAGAGGTATAGTTCTCA
CTTGTTTTATCGTAACATTGACTCTGACGACCACCCAGGCTGAGG


Right flanking sequence: Indices 10958 -- 11457
GCGTGAAAAGAGGAAGAAGGAAAAGGAGGAGAAACTTGCGAAGGAGCTCAAGCTCAAGCAGGAGC
AGGAGACCGTAGGTTGCCTGAGCTGTGCTATCGAGAAGGTGCTTACGACTACCGACAGAAGGACG
CACGACGCAAGTCACATACATCATCATCCACCACTGTAACTGCTTCTACCTCTGCTGCTTCCACC
GGCACCACCAACTCCGCCGCTACAACTGACTCTGAGACCTCTGACGACGAAAGCGATGATGCGAC
AGCTAAAACTGCCGACACTACCAAGAGTGCCGAAGTTCAAACCACTGGCGTTGCCGGAAGCCAGT
GGATCAACGTCAAGAGTCCTAGCAGCTCCCCTGTGTCGGCTGCCGGGATTATTGAGACCATTAAC
AGCCTGTCGATTTGAGGTGTGATTGCGTGTCCTGTGTGCTGAGCGTGTCTCGTCTTCTGAGTTCT
GCGGCTTTGAGCTTGTATGGTTTGTTGTGTGTGTGTGTGTCCTAA


Done.

rsol.ctg.fasta.s4790.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266785

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 45667
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24


Found at i:14921 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140266794
    Period size: 9  Copynumber: 3.9  Consensus size: 9

       6052 TATAAAGTAA

                     
       6062 TTTTTCTTC
          1 TTTTTCTTC

                     
       6071 TTTTTCTTC
          1 TTTTTCTTC

                    *
       6080 TTTTTCTTT
          1 TTTTTCTTC

                    
       6089 TTTTTCTT
          1 TTTTTCTT

       6097 TGGAACCGAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   9   25  1.00

ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83


Consensus pattern (9 bp):   
TTTTTCTTC

Left flanking sequence: Indices 5562 -- 6061
CGGGAGCTCAAATGACGAGATGTGCCTCACAAGTACATATGGTTATCAGCGCTCATAACTGCATT
TGCAAAGTCCTTTTTTGCGAGTTCTCGGGCCCGCGTTTGAGTGAGACCATAGTCGTTAGTGCCCC
CAATATCGCGGGCACGCGAGAGTTCTCGAATGATTGCTCCACCCTGGGAGTTAATTCCCCGACTG
TTTTATTGAAACACATGTTCAAGGTTAGTAGAGTTGCATATACACAACTAAAAAACTCACACAGA
TGCCTCCCAGAACCCCGGACAGAGGCGAATTGTCCTAGAGACTTCTATATACATGGATAATCTCT
TCTTTTCACGTCCTGCCAAAAGCTTTTTAAAAGCCCCGCTGTTAACTCGAGGTTTGAAACAAGGT
TGACAATCGTAGGCAAACAAAGGAGCTTGGTTGACCATATTCCCAAAGCGTAGCTTTATATGATT
GAAGTAATCTTCGGCATATATGCCAAAGTATTTTTTATAAAGTAA


Right flanking sequence: Indices 6097 -- 6596
TGGAACCGAATCCCTCAATGAAATTGTTGACCTCGTTTATCATATTATTCGAGGCACTGGGAACA
AGCCATTTAACACGGGGTCAGCAATGCAGTAACCATAAACATACCGCGCAGCCAGTATGATCTGT
TTCACTTGTCCCTCGTTGCACCCACTATATCGAGTAGATTTACTGTCGACAGGAATGGTGGCAGC
GTGCTTGCTGGAGGTGGCAGCTTTCTTGTTGGTAGATTGACTGAAAGTATCAAGGGCAGAAGCTT
GAAATATAAAGAACGTAAGAAGTAATGTGATGGTGGTAGTTTTCATAATGTAAACAGTGAGCTCG
AATGAAGAGTGAGGAGACGAATGATGATTCGAAACAATGGATGAATGTTGCATATTTATACCAGA
GTTGAAACGGGGATGGGGCCATCCATCGGAGTACAGCTTGCTAGAGCGCGCCATAGTGATTACAG
AAGGTACGAACTTGCAACATTACAATAAACGGGCCAAACATCTGA


Done.

rsol.ctg.fasta.s4802.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266797

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 3991
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24


Found at i:1790 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140266827
    Period size: 9  Copynumber: 3.8  Consensus size: 9

      16049 GTATTTGAGC

                     
      16059 AAAAAGGCG
          1 AAAAAGGCG

                     
      16068 AAAAAGGCG
          1 AAAAAGGCG

                     
      16077 AAAAAGGCG
          1 AAAAAGGCG

              *    
      16086 AACAAGG
          1 AAAAAGG

      16093 AGATCGAGAG


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   9   24  1.00

ACGTcount: A:0.56, C:0.12, G:0.32, T:0.00


Consensus pattern (9 bp):   
AAAAAGGCG

Left flanking sequence: Indices 15559 -- 16058
CCGCCTGGACTTGAAGTAACACATATCCATAGCTAAATCCGAGCTCGACCCAGCCGCTCTTAAAT
GCATGTGTACTCTCTTGACCGATATAACGCATTTCAACTTTAGCTCCAACATTATGGCAACAATT
GTCGCAAGACTTAGCAAACGCTCCTGGGACGAGGTGAGTCTGAGACGGATGAAGAAAGCTCAGCG
TTCTAACAACGCATATACAGACCTCCAACTTATGCTCGAATACCCTGATAACCATGATCCGCTCA
GACACAACTGGAACGTCATCTCTCGAAGCAGTCCGACTGCTAAACCGAATGATTAAAGAACGTCG
ATTCTTGATTCACCCCAGAGTTCTCAACTGTCTATTACACCTTCGTCTCAAAACAGAGCTGGGTG
TTCGGGCGAACAGAGAAACGATCGATCGACCAGAGGAAAACAAGGAAAAGGTCAAGAAACTGCGC
AAGGGAAAAAAGGCTAATGTCAAGGAGGGTCAAGTGTATTTGAGC


Right flanking sequence: Indices 16093 -- 16592
AGATCGAGAGTGAAATGGCAGAAGCTACGGCCGAGGTTGATAAGGAGGAGCGTACTAAGCAGGTA
AGCTGCTGAAAGCGTACTATCTGGTCTTGGCCTGACTTGTGTTACACATATAGCAAACCGAAACG
CTTAAACTCCTATTCGTGCTGTACTTTCGGATCCTTAAACACCCAAAACCTACACCCTTGCTCCC
GGCTGCGCTGGAAGGTATCTCTCGATACGCGCATATGGTCAACGTGGATTTCTTCAAGGACTTGT
TGCAAGTTTTGAAGGAGCTAATCGAAAGAGGAAGCTTCCATGAGGAGGAAGATGGTGATGATGAA
GAGACCTCGCACGGATTGGTACAGGAATCAGAGATTTTGCGTCAACGACTTTTGTGCATATCAAC
CGCTTTCGAACTGCTCAGTGGGCAAGGTGCGGTTTTATGCTTCTCGTCATATTATGGGCTAACAC
TGTCATGCAGGAGAAGCATTGAACATTGACCTGAACGAGTTCGTC



Found at i:25404 original size:27 final size:27

*************Found a new SSR********************
 Sequences: ctg1113140266851
    Period size: 9  Copynumber: 8.9  Consensus size: 9

      34306 TGGAATGGAA

                     
      34316 GGCATGGGC
          1 GGCATGGGC

                     
      34325 GGCATGGGC
          1 GGCATGGGC

                     
      34334 GGCATGGGC
          1 GGCATGGGC

                     
      34343 GGCATGGGC
          1 GGCATGGGC

               *     *
      34352 GGGTATGGGT
          1 -GGCATGGGC

                    *
      34362 GGCATGGGT
          1 GGCATGGGC

              *     *
      34371 GGAATGGGA
          1 GGCATGGGC

                     
      34380 GGCATGGGC
          1 GGCATGGGC

                    
      34389 GGCATGGG
          1 GGCATGGG

      34397 TGGTATGGGT


Statistics
Matches: 64,  Mismatches: 7, Indels: 2
        0.88            0.10        0.03

Matches are distributed among these distances:
   9   57  0.89
  10    7  0.11

ACGTcount: A:0.14, C:0.15, G:0.57, T:0.15


Consensus pattern (9 bp):   
GGCATGGGC

Left flanking sequence: Indices 33816 -- 34315
CTTCCTGATCTCAAGGAGGATACCGTGAAGTTTGAGTTAACACCTAACAAGTTGACATTCAAGGG
CACCACCGGGAGGTGGGTCTTTGCTTGTATCAAAGAAATTGATGTAGTACTAACTCAGATTTAGC
CCGGGAGAGAGCCCCGTTGATTACGCATTTGAACTCGAGTTATTTGGCGAGATTGTGCCCGAGGT
AAGTGGTAGCAAGTCTGAAAAGCGATTTTTTTATGAATGCCATTGGGGCGGACAGGAATCCGTAA
AGAAATTAACGAGCAGACACCTTGTCGCGGTATTACATAAAAAGGAGCTCAAGCTGGAATACTGG
CCACGACTCACAAAAGAGAAACTCAAGTTGCAGTGGCTCCGCACAGACTTTGAGAAGGTGAGCTC
GGAATACGACTATATTCGATAGAAACAAGCCGACTGAGAACACAATGCAGTGGGCGGACGAGGAC
GAACAGGACGCTAAGGCAGCAGATCTTGATATGGATGGAATGGAA


Right flanking sequence: Indices 34397 -- 34896
TGGTATGGGTGGTATGGACATGGAGAAACTCATGTCGCAAATTGGTGGTGGTATGGGTGGAGGCG
CTAGTGCCTTGGATCCCTCTTCACTTGGTGGCGCCCCAGATTCTGATGAGGATGACGATGATGGC
CCGCCACCCCTGGAGCCTGCCGACGCACCCAAGTAAGCGCATGCAAAGGAGAACCAGTAGATTGT
GTAATTGAATTTATCATATTGTGCAAACACCGATCCGGGTGACCGGAGTCCGACCCATGTTTGTT
GATCGGATGGAGTGTGTAAATCCCCGCCACTTTCCACCCCTAGCGTTCAAGCCCCCGCTCTTAAC
GCGTCCTACCACTGCTGAAAATTTGCTGAAATCGGTTGGTAGCATAATTGCTATCGACTAATGGG
CATATGAACACACTCGAAGAAAGTAAACCTTTTCGATTACAGGAATTTAACCAGGGTAAGCTGGC
AGGGTCCATTGTTCGACATCTTGCTTTTATTAAACCGCGTTTTTC



Done.

rsol.ctg.fasta.s4859.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266854

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 10992
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27


Found at i:388 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140266948
    Period size: 9  Copynumber: 4.2  Consensus size: 9

      20519 TAGGTCAATT

                 *   
      20529 TCTTCCTCG
          1 TCTTCATCG

              *      
      20538 TCGTCATCG
          1 TCTTCATCG

                     
      20547 TCTTCATCG
          1 TCTTCATCG

                     
      20556 TCTTCATCG
          1 TCTTCATCG

              
      20565 TC
          1 TC

      20567 ACTATCCATC


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   9   26  1.00

ACGTcount: A:0.08, C:0.37, G:0.13, T:0.42


Consensus pattern (9 bp):   
TCTTCATCG

Left flanking sequence: Indices 20029 -- 20528
AAGCATAAGAAGACATGATTAAAGGTATAGCACTCTACTGAATATTGTTCACGAGGGTGTGGGAT
TGTGTGCAGCGCGTAGAGTGGTAAGTGGTTTGACTGCTTCGACTCGTTCCCTGCCATGTTTTGTA
TACTTGCGATGAGGCTTACAGCCAGAAGCTCCGGGTCAATACCTGTTGTGGTCCGAGCTTCGCAA
AAAATAATCAGGACAGCATGTAGGGAATGCAACACAGCGATTGGACCAAGTCCAGAAGAATTAGG
TACGCACCTGGCCCAGTTGTGGTACTTTATTGTTCCCTGAGCATCCATGGTCATAGTGAGCGGCC
CGGAATGGAAACTATACGCATGTGTTCTATTCGTCCCAAGGCAAGACAAGGAGCTAACCAACATT
TTTCAAGATCGGGACCGAGGCGCACAGCGAATTAGAAAATACTAAAAACAAGAGCGGGACATATT
TATGAGCGCTTTGCCTTCTTTTTGCGAGGTTCTTCTAGGTCAATT


Right flanking sequence: Indices 20567 -- 21066
ACTATCCATCTCCTCATCACTTTCAGCCATAGCACGACTCTGAGAGCGAGGTTAGACCCTTATAG
TAGAAATGGAATACGAAGTGTACATACCATCTCGCCCTCTCCACGGTAATACTGCAATGCTTGAG
GGAACACATCTTGAACGATTGTCGGTCCAATCTATGCCAAATCTTATCACTCTCACGTAACCGGT
AGCAATAACAAAGGGCATACCTCGCTAACATCGCGCTCGTGCTCAAACCAATTGAAGAAGCTACC
GAGTTCTTCGATATCAGTCGGGTCCTCGGGGCTAACAATGCGCGGCGAGAGCTTGGTCAGGTTGT
GAGCATCATCTTTCCAGTTGATTTTGATTGCCTGCAGGTTTTCGATTAGGAAGTTGACTCCTTTG
TTTGAGGCAAACGGACCTGTGGTGTAATATGCAACTCCCAGTCAAATGCTTCTTGGGCATCCGAC
ACGCCATTTGCGTCGACGTTTGTCCCAGGTGCAGGGGTGCCTTCA


Done.

rsol.ctg.fasta.s4954.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266949

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 10877
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24


Found at i:10784 original size:93 final size:94

*************Found a new SSR********************
 Sequences: ctg1113140266962
    Period size: 9  Copynumber: 4.8  Consensus size: 9

      40069 GTAAGAGGGT

                     
      40079 CCACCATGC
          1 CCACCATGC

                     
      40088 CCACCATGC
          1 CCACCATGC

                    *
      40097 CCACCATGT
          1 CCACCATGC

                 *  *
      40106 CCACCGTGT
          1 CCACCATGC

                   
      40115 CCACCAT
          1 CCACCAT

      40122 AACCGCCAGG


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   9   31  1.00

ACGTcount: A:0.21, C:0.51, G:0.12, T:0.16


Consensus pattern (9 bp):   
CCACCATGC

Left flanking sequence: Indices 39579 -- 40078
GTGTTCCATTGAGTGACCAGCTCGATCAAAGGATCAAGGGCGCTGCTTCGGGATGACTGCAAGAC
CTGAGAGGTGAGAGAGATGAGGCCCTAAAACACAAGTGGTCAGATGTCTGAATTTGTATAATTCC
CTTGCTACTTACCTGCATGCAGCGATCCCATTCATCGGCCATGACGTCATGGGGGACCAGGGCGG
CCGGAAGTGGTGGGGGCTGAGGCTGCATGAGCTCTCTCAGATCCTCAACAAGGAAGAATTCTTCG
AACGCGGTAAACGGCTGTGCCCTGTTGAGCTCGCGCCCGGACACAGTGTACAAGGAGGTTGGAGC
ACCACCGGTCGGTCGACGAGTGAGCGCATAGCTATCACCACCAGCGGGAGGCAAATTGGAAACGG
TGGAATAGGGCGTGCGCTCGGCACCACCGTAAGCTGGATAAGCGCTCGCGGCATTAGGGTCGCGT
GCGTCGCGTGTGTCGCGTGTATCGCGCGCCCCTCCGTAAGAGGGT


Right flanking sequence: Indices 40122 -- 40621
AACCGCCAGGAAGATGGGTTGAGCCCATAGAAGGAGATGCGTGACGGCTGCGGCTGTAATATCCT
GGGCGAGGAGACGGGCCACCACGAGGAACATCATCGTGATGGGTAGCAGGGGGAAAGGCAGAATG
CGGGCGAACAGGCGAACCGGGCATGGAACGAGCACCAGCACCGTACCCGCCTTGAATGGGGGCAC
CATATCCTCCGCCTCCCGGAATACCAGCTCCGGCAGGAGGATAGAACGACGGACGTTGGCCATAA
TCCCCACTGATCTTGCGGTCGCGACCTGCTTCACTCATGCTGTTCTTGCGGCTACGGAAACCACC
TGCAGAAGGGGCGTATGCGGCTGCTCCACCACTCATACGGCGTTCACGACGGCTGTTGAAAGACA
TGTCGAGTGATTCTAACTTGCGACTCAGGTCATCGTCACGGAGCATAGCACCGCCACTCATACGA
CGAGCGCGTTCAAAGCCGAGACCAGCGCCAGTGCTCATGCGGCGC



Found at i:41353 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140266962
    Period size: 9  Copynumber: 5.7  Consensus size: 9

      41320 GCATCATCCC

                   * 
      41330 CATCTGCGG
          1 CATCTGCTG

                     
      41339 CATCTGCTG
          1 CATCTGCTG

                     
      41348 CATCTGCTG
          1 CATCTGCTG

                  ** 
      41357 CATCTGAGG
          1 CATCTGCTG

                     
      41366 CATCTGCTG
          1 CATCTGCTG

                  
      41375 CATCTG
          1 CATCTG

      41381 GGGCATTTGA


Statistics
Matches: 37,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   9   37  1.00

ACGTcount: A:0.14, C:0.31, G:0.25, T:0.29


Consensus pattern (9 bp):   
CATCTGCTG

Left flanking sequence: Indices 40830 -- 41329
ACTGATTTATATACCATCTCTTGACTGCTTTCTCGTAGTCACGTTGGCTCATTCCGGGCTTCATA
ACAGGATAATCATCTCCTGGAGAGGGTGGATAGCCTCCACCGGGGGGCATTCCACCGGGGAGCCC
AGGAGCAAGGCTACCAGGAGGCATGCTAATAGGGGGCATCATCCCAGCAGTTTGTGGAAGCTGGG
CAGCGCTCGAGGCAGTAATAGCACCGGACGGAATCCCAGCAGCAGATGCTTGACTAGATGTGGCC
GTGACCCATTTGATGCCGCGAGTTGGGCCCGAGGGCGTCTGATAAAATGTTTCTATCCCAAAATA
TCAGCCGATCGAGTTGATCGCGCAGCAGGGTGTTGCATGTACCTTGGGCAATGACGGGGGTATAT
GTTGCAATGCCATCGGGGCCTTCAGACTTGGCGTATGCGATCGTCCCGGGTTTAGCATTTGCGTA
CGGATCAGCCGCCGTGGTCGAGGATGACATCTGTGGCATCATCCC


Right flanking sequence: Indices 41381 -- 41880
GGGCATTTGACCACCATACTGGGGAGGAGGCGCGCCGTAGCCTGCGTTCGGGTTGACATACTGAG
GCTGGCTCCCGGGGAATGGGATACCACCACCGTAAGACGACATCTTGGCAGTGAGCTAGTGGTCG
TCGTTGGGAGAGAATGAGAGGTAGGGTGAAGGGCGGCTTACTTATTCGAAACCGGAGGACAGAAA
GAAGGGAGACACTGCCACATTAGGCGACTCATCCCGCGATGCTAATGATCCAGCCGCGATTGTCT
ATCACACTTGCTTAGTCTCGTGCTTATTCGCATATACCTTCTTTTCAGGTCAAATCGACGTAAAT
CAGCACGTCTGGTATGTGTACAAAGGGACAGCAACAACTTCCTAAGTATACGCATATAGCTATAT
GACAAAACAAAGGCTAACCGGCGCCACCGGCGGAAATCATTGTGTTTGTGTCTCCCTGGATAAAA
CGGTGGGCACGGATGACACCGGGATGAGCCCGACTTCTGTGACGA



Found at i:41362 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140266962
    Period size: 9  Copynumber: 2.8  Consensus size: 9

      47365 TGGGGGCGGA

                     
      47375 GGTGGAGGC
          1 GGTGGAGGC

                     
      47384 GGTGGAGGC
          1 GGTGGAGGC

                   
      47393 GGTGGAG
          1 GGTGGAG

      47400 AATATGGCGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.12, C:0.08, G:0.68, T:0.12


Consensus pattern (9 bp):   
GGTGGAGGC

Left flanking sequence: Indices 46875 -- 47374
TTTCGTAGCCCATTCCGCTAGACACACGTCTAAGCCGCGGTATCTCTGGTACAGTCTTGTACGAC
CCCTCTTGCGTCCCCGAGTCATCATATCCATCCCCTCTCACCAAAGTCGGCCTCCCGGATATTGT
TGCCAATCGCACCCTATCTGCTCAATTCTACTATCCCCGGCAAATAACCCCACATCGTTCTGTAC
TCCTTCCCGGCGTACGACTTGCTCCCAAGGCTCTGGGACAAGCGGACGCTGAACACGTTATGCGT
GGGGGAGAGTCACGTCGTGGAGGCGGAGGAAGGGGTAGAGGTGGACGAGGCGGGCCTCCGAGAGA
TGCTGGATTCGTCAGCTCTACAGGAGGGTACAGTGATAGACCTGGTGCATACGACCGCAATGGAT
CTAGGTTCTCCCAGTACGATAGTTATAATGGCGGATATGGAAGCGGATACGCCGGGAACGGAGGT
TCTGGAGGTTCTGGAGGATATGGTGGAAGTGGAGGTGGGGGCGGA


Right flanking sequence: Indices 47400 -- 47899
AATATGGCGGATATGGTGGTGGAGGATATGGGGGTGATGGAGGATATCGAGGAAACGACGGTTAC
AGGGGTGGAGGTAGAGGCGGAGGCAGAGGAGGCTACAATGGGTACGATCGTGGGTCGGCACAGCG
AGGTGCTCCACGGGGAGGTCCACCAAGAGGCGGCAACCGCGGTGGATATAATGGCTCTGGTGGGT
ATGGTGGGGGAGGTGGATACGGCGGGTATGGTGGACGGGGTCGGTAAATCCTCAAAATTCGCGTT
GTTCGGTTTTAGTCTGTCCGAACCTTACTGATGGCGAACGAACGCCACTATGTTCTTGTTCTTAA
TCTTTAAAATCACCAATGTAATCTACTCTATTCTATACAACAACACGTCTAGAGCTCCTTCTTTG
CCTTGCGTTCGTTCTCTCGAATCATTTGTTCTCGGATCCAGTCAAAGGTGCGTTCAGTCGCATGC
TCCACCGGGTGATCATACATGTAGGGGAGGAAGGCTAATCACAAC


Done.

rsol.ctg.fasta.s4971.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140266966

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 14561
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26


Found at i:13477 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140267002
    Period size: 9  Copynumber: 4.4  Consensus size: 9

      18600 GATGGGTCGC

                     
      18610 AATACCAGA
          1 AATACCAGA

                     
      18619 AATACCAGA
          1 AATACCAGA

                     
      18628 AATACCAGA
          1 AATACCAGA

                     
      18637 AATACCAGA
          1 AATACCAGA

                
      18646 AATA
          1 AATA

      18650 ACACGGATTC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   31  1.00

ACGTcount: A:0.57, C:0.20, G:0.10, T:0.12


Consensus pattern (9 bp):   
AATACCAGA

Left flanking sequence: Indices 18110 -- 18609
TTGAACAATGCGCGGTAATGATTTTCGGTTGGGAGAGGTTTATCCAGAATAGATATCCTGTGCGA
CCACCATGGGTGGTATCCTTCAAGTCTACATAAGAAAGAAGTTCCAGCCAAGAGATGAGATTGGA
CACACACCAAAGCACATTATGACTCGATCACCCATCCTGGCTCCTAGCTCCCGGACTTTGGCTTG
ATCGTCGGCATTGGTCGACATTGCGCATATTTGGCCGAGCTGTACTGTTTGTATATGCTCGTCTG
AAATCGGCGAGGTGTCGGTAGGATGACAGTGGACATCAACAATATGGCCTAGGACCGCGGCAGAT
GGAAGTGGATTCCCAGAGACGGTATCTGCTGACAAGGATTCTACTGTCTCGGCATTATGGTTGGG
ACACATTGCAGTGATGTAGACACAGAGGTATACAAGTCGTGGTGGCAAAGTATCAGAACGAGGTA
TGATGTAATCCACCTACTGTAGATCCACAGATCAAGATGGGTCGC


Right flanking sequence: Indices 18650 -- 19149
ACACGGATTCCATTCGTACTCGTAATATTGGACATGAGATAAGCAAGACAGTTAACGATCCTTGG
GTAGTGTGGTATACTATAAGTGCCAATCGATACAGCAACACAACGCAGTCGAGCGTTCAACGTCC
GCGTAATGGTCCGTATTAAAGGATGATGGAAAACGTCCGTCAGATGCAACGTCCGAAATAGTACA
TATCCTCCCTCTGAATGACAAATACACTATACGATTGGCGTAGATAAGAGATAGAAAGATAGACG
GGAAAAGAGATTAGCATAGATGCGAGCACAGCTCGATGGCTCGGGAAATTCAGACCGTTCCACAC
TCATTAATGTTGTTATTCAAACCTTGCATTTGTTCATGAAATTAGGCTAAAAATTGTTGCCATTG
TTGTGATTGTTGCCCATCCCTCCGGGATAAGGGCTTGGAGGTCCCGAGGAACGAGACATGCCCAT
TTGTTGTTGCTGGTACTGGCTCTGCATTTGGAGCATCTGAAGTTG



Done.

rsol.ctg.fasta.s5011.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267006

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 26619
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25


Found at i:2179 original size:56 final size:56

*************Found a new SSR********************
 Sequences: ctg1113140267009
    Period size: 9  Copynumber: 10.2  Consensus size: 9

      34712 AGGCGGCGGT

                     
      34722 GGAGCGGGA
          1 GGAGCGGGA

                     
      34731 GGAGCGGGA
          1 GGAGCGGGA

                     
      34740 GGAGCGGGA
          1 GGAGCGGGA

                     
      34749 GGAGCGGGA
          1 GGAGCGGGA

                     
      34758 GGAGCGGGA
          1 GGAGCGGGA

                     
      34767 GGAGCGGGA
          1 GGAGCGGGA

                     
      34776 GGAGCGGGA
          1 GGAGCGGGA

                     
      34785 GGAGCGGGA
          1 GGAGCGGGA

                     
      34794 GGAGCGGGA
          1 GGAGCGGGA

                     
      34803 GGAGCGGGA
          1 GGAGCGGGA

              
      34812 GG
          1 GG

      34814 CGATGAAACC


Statistics
Matches: 83,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   83  1.00

ACGTcount: A:0.22, C:0.11, G:0.67, T:0.00


Consensus pattern (9 bp):   
GGAGCGGGA

Left flanking sequence: Indices 34222 -- 34721
TCATCTACGGCTAGGATAGCTTCGCGAATAGCGACAGGAGACAGCTTCAGTGTCTTGAGCATTAT
GGCTACATATTGGGTGAGTTTCGCTACCACTCCCTCTCCATGCAGATCAGAAGCGGACTTACCAA
CGTTATTGGCGCGTGTGATGTCCAACATAGTTGTAACTTGCTGCGGCTTGTTCTTTGTCGTATTC
GAAGTACTGACAGGTTTGGGTGGTGCCTGGTCCAGAGTGAAGACATCTTCCAAGTCGGTGAGATC
AACCTGCCCTCCCATCATGCCAAGCTGTCCCCAAACTGTTTGAACACCCCCTGCAGTTGAGACCT
TGTCCCAGAAGAAAGGCTGGAACAGTCGTTAATTGAATGAAAATCATTTGGCTAGTTAGTCCTGA
CCTTGAGTTTCTTGCTTGGAGGAGGGGCGGAGACACTGGTCCGTTTGGATGCTTTCCATGCTGAG
GGTGCTCCCACGTTGGATGGAGGTGGTATCATGGGAGGCGGCGGT


Right flanking sequence: Indices 34814 -- 35313
CGATGAAACCCCCGCTTAGCATAACGTTTTAGTCGGGCCATATTTTGGACTAATCATACTCACAG
GATGTATAAGGAATGGATGATGCCGGTGGTGGAGGTGGAGGTGGTGGAGGCGGTGGAGGCGGTGG
AGGAGCGCTGCTTGAGGAGGCGATAACCAAATTGACGGGAAGGGACGGCGGCGGGGGTGGTGGCG
GAGGAGGAGGTGGCGGCGACGGAGGTGCGGCGATGGCGCTAAGGCTATGTGAACGGCTCAGTACG
AGAGGAGGGGGAGGGGGAGGCGGCGATGGAGGGAGAGCAGGTGCACTTCCTATATCAGAGTCGCC
GAAAGGCTGAGACTGACGCCGTGGAGGGGGTGGCGGTGGCGGGACGCGAGTCTTGAATTCACGCT
CCGCCGACTGCTGCTTCAAGCTTGATTGAACTTCCTCGAGCTTCTTGTTGAGCTCCTCTAGTTCC
CGACGCATTTCGGCTATTTGCTGGTCCTTGGCAGAAAGCTCATCT



Found at i:34924 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140267009
    Period size: 9  Copynumber: 5.0  Consensus size: 9

      34892 TGGATGATGC

                  *  
      34902 CGGTGGTGG
          1 CGGTGGAGG

            *        
      34911 AGGTGGAGG
          1 CGGTGGAGG

            *        
      34920 TGGTGGAGG
          1 CGGTGGAGG

                     
      34929 CGGTGGAGG
          1 CGGTGGAGG

                     
      34938 CGGTGGAGG
          1 CGGTGGAGG

      34947 AGCGCTGCTT


Statistics
Matches: 32,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   9   32  1.00

ACGTcount: A:0.11, C:0.07, G:0.67, T:0.16


Consensus pattern (9 bp):   
CGGTGGAGG

Left flanking sequence: Indices 34402 -- 34901
TTCTTTGTCGTATTCGAAGTACTGACAGGTTTGGGTGGTGCCTGGTCCAGAGTGAAGACATCTTC
CAAGTCGGTGAGATCAACCTGCCCTCCCATCATGCCAAGCTGTCCCCAAACTGTTTGAACACCCC
CTGCAGTTGAGACCTTGTCCCAGAAGAAAGGCTGGAACAGTCGTTAATTGAATGAAAATCATTTG
GCTAGTTAGTCCTGACCTTGAGTTTCTTGCTTGGAGGAGGGGCGGAGACACTGGTCCGTTTGGAT
GCTTTCCATGCTGAGGGTGCTCCCACGTTGGATGGAGGTGGTATCATGGGAGGCGGCGGTGGAGC
GGGAGGAGCGGGAGGAGCGGGAGGAGCGGGAGGAGCGGGAGGAGCGGGAGGAGCGGGAGGAGCGG
GAGGAGCGGGAGGAGCGGGAGGCGATGAAACCCCCGCTTAGCATAACGTTTTAGTCGGGCCATAT
TTTGGACTAATCATACTCACAGGATGTATAAGGAATGGATGATGC


Right flanking sequence: Indices 34947 -- 35446
AGCGCTGCTTGAGGAGGCGATAACCAAATTGACGGGAAGGGACGGCGGCGGGGGTGGTGGCGGAG
GAGGAGGTGGCGGCGACGGAGGTGCGGCGATGGCGCTAAGGCTATGTGAACGGCTCAGTACGAGA
GGAGGGGGAGGGGGAGGCGGCGATGGAGGGAGAGCAGGTGCACTTCCTATATCAGAGTCGCCGAA
AGGCTGAGACTGACGCCGTGGAGGGGGTGGCGGTGGCGGGACGCGAGTCTTGAATTCACGCTCCG
CCGACTGCTGCTTCAAGCTTGATTGAACTTCCTCGAGCTTCTTGTTGAGCTCCTCTAGTTCCCGA
CGCATTTCGGCTATTTGCTGGTCCTTGGCAGAAAGCTCATCTACTGCGTGTTTAGTTATACTCTC
CGCATCGAAGTTATCGTCAGGCCGTTCGGAAACTGCTTCACGTGTGCTATTGGCAGATTCAAACC
TCGAAGAAAGAGCCTCCATCGCACGCTTCAAGTAGAGAACCATTT


Done.

rsol.ctg.fasta.s5019.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267014

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 26894
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26


Found at i:4578 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140267038
    Period size: 9  Copynumber: 2.8  Consensus size: 9

      33827 AATATGGACC

                     
      33837 GGGCATGGT
          1 GGGCATGGT

                     
      33846 GGGCATGGT
          1 GGGCATGGT

                   
      33855 GGGCATG
          1 GGGCATG

      33862 CCGAAAGGCC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.12, C:0.12, G:0.56, T:0.20


Consensus pattern (9 bp):   
GGGCATGGT

Left flanking sequence: Indices 33337 -- 33836
TTTGCTGAATCATAGGGTCATTCTGAAGGGACTCCAAAGTAACATTGTCTTCACCAACGCTGCTA
CTGGACCCGCCAGAGAACTATAACCAAGCAAACTGTTAATAAGAACAGGGGCGCATCAAGTGGAA
TAGTACTAACCATTCCAGAGAAGCCATCAAATTGAGAAGACGTAGAGCCCATGCTTGAAGTAGAG
GGAGTTGGACGAGAAACGACGGATGACGAGGGTTCATGATCACTGGAAGCGGTAGGTACGGAGGC
CAGAATGGGTGAAGAGGGAGCAGGGACGGCAGCAGCCGCTGAAACGTCATTCTGGAGGGGTGCGG
ATGGAAACTCGGACGCGGCTACAGTGGCAGGTTCAGTTGGCTGAACGTCCTTCGTCGGTGGCTTG
ACTGGGTTGGGCAAAACTGATTCCGTTTCCGTCGGTTTGGAAGGCTCTTCAGGTTGATCAGGATC
TACTTCTTCAATGTGGCCCATGGGTTGTGGCCTGGAATATGGACC


Right flanking sequence: Indices 33862 -- 34361
CCGAAAGGCCTAAAGGCCGACGAGCTAGGGCCAGAAGACGAGAAAGAACTGGATTCGTCGAGCAG
ATTCTCCGGGATGCCCTACTCGAAAAGTTAAAATAATTCAGTTGCATATACACAATGACTCACAG
TTGCGAGGTACTCCACGGCGCGTTCGGTGTTGCCAAAGCTAGCCTTGAGTGCCTTGATGACTTGA
TCGCGCTCAAAGCCCATTTCTACGAGACTGTTCACCGATTCTTCCGGCCTAGATGACCCGAACAT
GGAAGACCCAAACATAGAAGATCCATCCATGGAAGCTCCCATGGATGGCCTCGACATGGACGGCC
CCGACTCAGGAGCCTTCTGGGCGGCCTTGGAAGAACCCAACATAGAAGAACCCGACATAGACGAG
CCCGACGTCCATTTATTGCTATTAAACAACGGATTCTGGGGAGTTGCAGCAGTCGCAGGCTTGAA
TGAAGGAGTGCTAGATGATGTCGATGACACTGGGTTGGCTGGCGC



Found at i:34236 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140267044
    Period size: 9  Copynumber: 3.1  Consensus size: 9

       4570 GAGCCAAGAA

                     
       4580 GAGAAAAAG
          1 GAGAAAAAG

                     
       4589 GAGAAAAAG
          1 GAGAAAAAG

                     
       4598 GAGAAAAAG
          1 GAGAAAAAG

             
       4607 G
          1 G

       4608 CCAAGAAGGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (9 bp):   
GAGAAAAAG

Left flanking sequence: Indices 4080 -- 4579
CCAGATGCTACCATACCGGACGCCGAAACAGCACCTACCGAGGAGAAAGCGAAGGGGAAGAAGGA
AAAGAAAGAGAAGAAAGAAAAAAAGTCTCGCAAATCAGGGGCCACTGACGAGGCTACATCGTCCA
ACATCATTAGCGATCATTCTACCACTCATTCCAATGGCGAAGCGCCTGCGACTATCCCCCTTGCC
ACTTTTGTCAACAACAACTCGCATTCTTTAACAACGGTGATAGAGGAATCCCCGTCCAAGATATC
CAAGTCCAAGGAGGCCACCGAACTCGGAGCCAGCAACGGAGTCGATGGAGTGAATGGGCATGGCG
AGTCGGGGGGAAAGAGAAAGAAGAAGGAGAAGAAGGGAAAGGCGAAGGAGCTTAATGGAACTAAT
GGGAGCTCGTCGGTCACGGAGATATCGACCTCTGAAGCTATCGCACCGAAGGAGCCAGATACCAA
CGACCTGATACCGATTTCCACGATCGAGGCGAAGGGAGCCAAGAA


Right flanking sequence: Indices 4608 -- 5107
CCAAGAAGGAGAAGAAAGCCAAGGACGCCACCGGTGCGCTGCCTGTACTGGAGCTCACCCTCGAG
CAATCTGAAAGTTCCCCAGTCGAAAAGCCCAAGAAGCGTAAAGCCAAGGACGAATCAACTGTCTC
TGACGCTCAGATTATGTCGAATGGTGCCTCCGAAAGCATGGAGAAACCCAAGAAGAAGAAGTCTA
AGCGACGAGACAAGGACATTGAGGCCACTGTTGTTTAACTTATAACCTCTATATCGTTTCAACCC
ACAACGCTTTGTTCAATATGATCTGTAATTGGTACATATATATACTCGTGAGGCCAAGGAACATA
TATCAGTCGTAGGTATTCAAAATACACAGCACAAGAAACAACCAAACTGCCTAAATTCCTTTCGT
TACGAATTAAAGCCAAGAAATCGCATCTAGAATGCTGTAGTGGAATCAACCTCAATAGTCGGAAC
AATACTGGCGATGAACTTGAGGAACACGACGAGGTAAAAGTCGAC



Found at i:4628 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140267055
    Period size: 9  Copynumber: 3.4  Consensus size: 9

       4407 TTTCTGTGTG

                     
       4417 TGTTTTTGT
          1 TGTTTTTGT

                     
       4426 TGTTTTTGT
          1 TGTTTTTGT

                *    
       4435 TGTTGTTGT
          1 TGTTTTTGT

                
       4444 TGTT
          1 TGTT

       4448 ACCCGGCTGT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.00, C:0.00, G:0.26, T:0.74


Consensus pattern (9 bp):   
TGTTTTTGT

Left flanking sequence: Indices 3917 -- 4416
AACCTGCGCTTGTTGTTTGCGGACACTCAACCGTCGGTCATGAACTCGATGAGTTCCTCGGCTTC
GATCAGGAGTGGTTCGTCGGCGGCTTCTCACTCGCAATACCACATGCAGTACAACCTTCCGTATG
GTGGTGGTGGACATAGTCCATATGGCCCATACAACTCACCCGCCGGACATGGCCACGGAATGCAG
ATGGTCCTGTTTGCTCAGCAGCAGCAGCAACAGCATCAACCTAGACGACCCCACTTGCGGGATGA
GATTATACTGGTGTCGGACGACAAGGTGATGGCGGTACGGCTGGCCCCACCATCACGCCCGTCGG
ACGCGGCGTCGATCTCTACCAAGGCATGAAAGTACGATACGATACAATTGGTTTAGTTTTTTTTT
TGTTTCTCTTCTTGGCTCTCGGTGTCACTGTCGGTCACGGTCACGGGGTTTTTTTTCTCTCTCTT
TTGATTTGTTCATGTGCGGTATTATTTTTTTCTCCTTTCTGTGTG


Right flanking sequence: Indices 4448 -- 4947
ACCCGGCTGTCTGTCCGTTTCCTATTGATCTCATCCCACATTAACTGTATTGCTTCCCCCTCTCT
CTCGCTTCTCGGTCCTACAATCAATATTAACTTTCGTAGATGAAAATATATAGGAGTATATATTC
GTGGCCGCGGGTGGGTATTGTACTAGTCAGTCTGCGCGCTTTAGTTTCATTTATTGGGGAACCGA
AACGCTTGGCCAGCCGCCAGCCATTCAAGCCCAAAGTTTGGCTGATGCGATAACAAATTTGCACG
CCCCATTATGGGGTACGTATAGCGTGGATGGACAGCCTGAATGCAGTGCGCATTCAAATACATGT
CAGCCGTGGGTGTGTGTCCTCCCTCGGCCGGTTTGATCATCCACACCTTCTAACGAGCCACGACT
CCCCTTCGTGTCTGGTTTGCACCGCAAGCATGGCGACTCGGCCGGTCGAGGAGAAAGACGCGAAT
AGTCAATCGGAAGCAAAGACGCTCGATCTACTCGAGCTGGACGAT


Done.

rsol.ctg.fasta.s5065.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267060

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 19106
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26


Found at i:466 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140267084
    Period size: 9  Copynumber: 4.9  Consensus size: 9

      28304 GTTTCCGCCG

                     
      28314 GTGTTGCCA
          1 GTGTTGCCA

                     
      28323 GTGTTGCCA
          1 GTGTTGCCA

                     
      28332 GTGTTGCCA
          1 GTGTTGCCA

              *     *
      28341 GTATTGCCG
          1 GTGTTGCCA

                    
      28350 GTGTTGCC
          1 GTGTTGCC

      28358 GCCAATGTTT


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   9   32  1.00

ACGTcount: A:0.09, C:0.23, G:0.34, T:0.34


Consensus pattern (9 bp):   
GTGTTGCCA

Left flanking sequence: Indices 27814 -- 28313
ACCAAGCAATGGTAACCACGCCAACTCGCTCCACAACAACACAGCAGTAATTAATATCGCACGAA
TATGCATCCATTTCTCTATCTCTCTACAACAAACAACCAAAGAGTAAACGCCGTACCGCGCGCGG
GTATCAATCGAAATGAAAACGTAGTCAAAGGAAGAAGATCGGGTAATAGGCAATCAAGTTAAGCA
ATTGCAGCGGAACATTTCTGAGCTTGCGCCTCGCAAGCGGCCACAGTCAGAGGGGCCTTGTTCCC
AGACGAGTTCGCGGCACCGGCACTATACACCCAAATTAATGTCACGTTCAACGATCATCGAAATA
GAACTAGACTAACCAAGTGTTCTTCTGGATGTCACACGATCTTTGTAACGCGCCGTTCTTGTTGA
CAAAGCTATCGCCGTTGATCAAAAAACCTCGTCCGCCGGCCGTGACAGGGGGGGCAGTGCCTCCG
AGCGAACCGGTGAACTTTTGGAGGTTGGCACCCTTGTTTCCGCCG


Right flanking sequence: Indices 28358 -- 28857
GCCAATGTTTCCGGTGGTACCTCCAGCGCCGCCAGTGTTGGCATTATTACCTCGGCCACCGCCAT
TGTTGTTATTGTTGCCGCCGTTGTTCCCACCGTTGTTGCCGCCGTTGTTGTTGTTTCCACCGTTG
TTCCCACCGTTTCCACCATTGTTACCAACGTTTCCGCGGTAAAGTAGACACAATCGTCGGTCGAG
CCACGTTGGGCAACGCAACCAAAACAGGCTCTATACAAATCTCATCAATAACGCCACCAAGACTC
AAAGTAGCTTTACGTACGGTGGTTAGCTGCCGAGTTAATGGAACACATTCTGTACGCTCCAGCAG
GTAGCCCAGCAGTGACGTCAGCGGTCAAGATACCACCCTGGGCCGCATTGTTCAATCCCTTGAAA
AAGGCAAACTTCTGTGGGTTTGTGACGGTGGTTTGATCGAGGGAACTGAGGAGCTCGACCGTGAC
GTGAGAGTGGCCGATTACGGTACCCGAGCCATCAACCTCTGGATA



Found at i:28503 original size:21 final size:21

*************Found a new SSR********************
 Sequences: ctg1113140267088
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       4151 TGGAAGGCTT

                     
       4161 CCAGAGACA
          1 CCAGAGACA

                     
       4170 CCAGAGACA
          1 CCAGAGACA

                   
       4179 CCAGAGA
          1 CCAGAGA

       4186 GGGGGGACCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.44, C:0.32, G:0.24, T:0.00


Consensus pattern (9 bp):   
CCAGAGACA

Left flanking sequence: Indices 3661 -- 4160
ATATTTTATGAAAAAACCTGGTTCTCTTGTCTACTGCCTTACCCACGCACGAGCCCCTGTCTACC
TTTTCATCCTCACCCAATAACCCTGCCACCTTGCCCATCCACATTGGTTCTAAACTGGCAAATAC
CCTGTCAATCCAATGAACGTACCCAACACAGACAGATATCAAATTATGACGAAAAAACATTCAAT
GCCGCTGTGACCTGCCCATAAAGAGTTGGATTGTAGCAGCAGAACCGACAACATAGGGTGCATAT
TAATTGCAGTGAGTTTCTCTATCCCACCTCACCCCATTCATGTATTGCATCCCCCACACCATCTC
TCATCCTTGGCTATGATCTGCCGTTTTGCATCCCTTGCCTTGTATCCATATTACCTTACTGCTAA
TATAACTACTACTACTACCACTACTATTACTACTACTATTATTATTATGATTGCTACTACTACTA
CTACCAAGGCTACATCTGCAAAGATGGTGCTGCTCTGGAAGGCTT


Right flanking sequence: Indices 4186 -- 4685
GGGGGGACCTTCTCTGGAAGGCTCCCAGAGATGAGTCAGGGTCTAGTTCTCAGCAGCTATAGTTT
GTCTGTATTTGTCCTCATTTGTACATATTATGTTTTCAATTCAACTTGTCCAGTGCTGGAACTTC
TGCACATAAGATACAAAATCAAACATATTATCCCAAGCCTAAACCCCGCATGTCCCGGGGTCTAA
CTATGGAACTCCCGTGCATAAAGTAGGTAAGCGAAATCATCCAAAACAGAACAAATAAAAGCAAG
AGTGATGAGAACAAGAATGAGAGTGAGAATGAGAGTGAGAGCAAAAGCAAAAACAAGAACAAGAA
CAAGAACAAAGACAAGAGCAAAAACAAAGACAAAAATGAAGACAAAAATAAAGACAAAAATGAGA
GTAAGAGAAATGTGAAGTTAGAGTCACGAATTCACTAAAGGTCTTCAAGCCCGGTTGGCTGCGGT
TCGGTGAGGGTCATGGTGCGAGATGGTGCGAACCATTGACTAGGC



Found at i:4525 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140267115
    Period size: 9  Copynumber: 4.9  Consensus size: 9

      16639 TACCTCGGCG

                     
      16649 TCTTCCTCT
          1 TCTTCCTCT

                     
      16658 TCTTCCTCT
          1 TCTTCCTCT

                 *  *
      16667 TCTTCTTCC
          1 TCTTCCTCT

                 *   
      16676 TCTTCTTCT
          1 TCTTCCTCT

                    
      16685 TCTTCCTC
          1 TCTTCCTC

      16693 CTCTGCAGCC


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   9   31  1.00

ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57


Consensus pattern (9 bp):   
TCTTCCTCT

Left flanking sequence: Indices 16149 -- 16648
CGTATGACCGAAAAACGTGCCAAGCGCTCGAAGAAATTTGAGGATAGCCTAAAGGACTTGCGCAG
AAGGACCAGGGAAAGTGGCTGGGCAAAGCGCAAGGCAGATGAACACGTCCATACCTATGGGGTTA
CGGATACAAATTTGGGTGTGCAGCGGTGCACCGAGTGTGACTTTGAAGTAGAAGTTGAAGAGTTT
ACTATGTAGCTTGGTCTACAATTGTAATTTATTATACTACAATAATATATAATACACCAGTATAC
AACGATCGAACTGAAGCATGAAACATCCCCTGGGACCCCGTCTCTGCTTACCCGATATCCATCCC
GTCTGGAGCAGGGGTGCCCGGCTGAGAAGGCACTGGAGTGCCAAGCTCAATGTCAACATCCCCTC
TAGGTGTCGACATATCCCTCGAGTCCACACCCTCCTGAGCCTCAAGAACAGTTGGGATGTCACCA
ACATCAATGACCACTGGTGGTTCCTCCCCATCCAGTACCTCGGCG


Right flanking sequence: Indices 16693 -- 17192
CTCTGCAGCCTCAGCTTTGTCTTTAGCGGACAACAAGCCAGCCCTCTGGGCAACCTTGGCCTCAA
GATCAGCCTTGAGCTTCTTAAGCGCATCTTCAAACCGACGCTATAGCCAAACGTCACATCAATGG
TCTCAGAGGCTTTCATGCCGACTCACCTTGATGAGGATGTTTTGTGTCCCCGCAATATCCTGCTC
TTTCTTCGCCACGGCAGCCTCCAGATCCCTAATCTCTTCATTCAAGAGCTTCTTTGTGCGAACAA
ATTCTTCATCTTCCTCGTCATCGCCGTCCTCTTCGCTTTCACTCTCCTCATCTTGATCATCGTCA
TCGTCTCCATCGTCATCGTCCGACTCCTCTCCAAGACCCTTGGCGAGTTCGGCCTGCAGCTCTTG
TTCAAACAAGTCATCCTCTTGTTGCGCTGCCGTGCCTGTGCCATCTTGATACCCATCCTCCCCGT
CAAACATATCCATGCCGCTGGCACCAGGAGTAGCCGCTTCTGAAC



Found at i:16670 original size:3 final size:3

*************Found a new SSR********************
 Sequences: ctg1113140267117
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       9790 TTGTGACTGC

                     
       9800 TGAGATTGT
          1 TGAGATTGT

                     
       9809 TGAGATTGT
          1 TGAGATTGT

                    
       9818 TGAGATTG
          1 TGAGATTG

       9826 ACCGGAAACG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42


Consensus pattern (9 bp):   
TGAGATTGT

Left flanking sequence: Indices 9300 -- 9799
GGGCGCTGAGGGAATCGTCTGACCCGCGGGCTGCGATACTAACCTCGCTATCTTGCGAAGTTATA
GCTCGTCGACCACTCTCCTTTTCCTTCTTGTCCTTTTTCCCTCGTCCGAATAGACCAGCCAACAC
TCCCCCCTTCTTTTTCTTGTCCTTATCCTTGGATTCCTTCCCACTACCCTCGCCGTCCGTGTCGG
GACCGTCAGAATTACGGTCCTTGCGCAATTTACGATCGTTGCTGGATGAACGGTTGTCTTTTCCA
CGTTTGCGAGAGCCGTCGCCGTTTTCGCTATCACTAGGCTCTTCACGGGACCGTTTGCCATCCTC
CTGTGAGGGACGTTGCCCATGACCGGCAAGTTGTAGCCCCGAGCCGGATGCGGCTGGTTCGTTGC
CGTTTGGACGGACGGTGCTTGTGTCCCGGGCGATGGCAGGTGTAACAGTGACACGTCTTGTCTCG
GTGATATTTTCGGGATCAAAGCCACGGGCTGTGTCTTGTGACTGC


Right flanking sequence: Indices 9826 -- 10325
ACCGGAAACGAGTCGTTCGCGAGAGCCCTGGCGTACAGTAGAGGCCAACCCAAGGCCAAGTTGGG
CTTGTTGGGCGCCGGGGGATATTTTTTCTTGAGTGGATGCGTCGCCTTGTCCCTGTCCCTGTTGT
GATTGCGCTGTGGGCTTGCTTCGGCTGTCCTCGGCAGCGCCATCCTCCCATGACATCCCGTCGTC
AGGGTCAAAGTCGGCTGGATCAACTTTGCCATTGGACGAGTGAGCACCAGAATTATCCTCAATTT
CCTCGTGTGCCTCTTCGTACTCGTCGCCCTCCTCGTCTTCATCCCATTCGTCCCCTTCATACTCG
TCCGAGTTCCACACGGCCGGAGGGTAGTTGAAGACTTGGTTGGAGCCGCCTCCAAAGATAACAGA
TTTGGGAGGGGGCACGGGAGATGATCCATAGCGTTGGCGGCGGTCGCGCTCTCGAATAGACTTGG
TGTCCTCAGTACGCTCTTGTTGTGTTGCACTCGCGAGCTGAACAG


Done.

rsol.ctg.fasta.s5130.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267125

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 5661
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.24


Found at i:4015 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140267125
    Period size: 9  Copynumber: 11.7  Consensus size: 9

       3991 CATGAAGACA

                  *  
       4001 AGGACGGCG
          1 AGGACGACG

                  *  
       4010 AGGACGGCG
          1 AGGACGACG

                     
       4019 AGGACGACG
          1 AGGACGACG

                *    
       4028 AGGATGACG
          1 AGGACGACG

                *    
       4037 AGGATGACG
          1 AGGACGACG

                   * 
       4046 AGGACGATG
          1 AGGACGACG

                     
       4055 AGGACGACG
          1 AGGACGACG

                     
       4064 AGGACGACG
          1 AGGACGACG

                     
       4073 AGGACGACG
          1 AGGACGACG

                     
       4082 AGGACGACG
          1 AGGACGACG

                     
       4091 AGGACGACG
          1 AGGACGACG

                  
       4100 AGGACG
          1 AGGACG

       4106 GCGGGAAAGG


Statistics
Matches: 91,  Mismatches: 5, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   91  1.00

ACGTcount: A:0.31, C:0.19, G:0.47, T:0.03


Consensus pattern (9 bp):   
AGGACGACG

Left flanking sequence: Indices 3501 -- 4000
TCTCCACGCCGCTTTACCAGCAGTCCACGGAGACGTTTTGGAATGGAGTTCAAATGAAGTGCCTG
GTCGCATCCTTGGTTGGTCGGTCACGTAACATCTTACAGGCAGGGTACTGGGGTGTCGACTTTCC
GGACCTCCACTTCGTTCTCATGGAAATCGAGGATATTACGGGCATGTTTTTGGAGAAGTCATCAT
CCTGGCGGAAAGGGTAAGTTTGATACACCTCTAAATGGTATACTCATCTTTGTCTGTCAAAAGGA
AAGAGAGTATCCTTTGGGTTCATACCAATAGGTACGCGTATGCCCTCCAAGAGCCTGTAGGACCA
TACGCGGCAATCTGGAATGTGGTTCTTCCCAACTGGCAAGAGGGCCATCAGGGTCGCTCGGGGTC
ATTCAACATTGTGGACAGGGCACAGCCCAAGCCATCTTGGTGGACTGGGAAGCTGGACTGGGAGG
CGCTTCTGTCGTACGAAGACGAGAACGAGAACGAGCATGAAGACA


Right flanking sequence: Indices 4106 -- 4605
GCGGGAAAGGCAAGGGGGAGGCTAAGGGTAAAGGCAAGGCTTTGCCCAGAAGATCAAAGCGCTCT
CGCCCAATGCCGCCGTCCAGGCAGCGGTCTCGACAAGCAAAAGGCCAAGCTGAGCCGAAGAGAAG
GAGCCCACGGAAGACCAACTCCGGACAGGGCAATGGCAAGGGCAAGGAGAGAGCGGTCCCACCTG
AGGAGACCATGCCAGCTGAGTCTGGTGTCTCACCCACGTCGACGGAGAAGAGGCGGAAAAGGAAT
TCAACAGGTCAGACAATGCGGGATCCCCAAGGCAGCAGTCGGCCTGCCAAAAAGGTACGGATTGC
TTCGATGTCTGATCCGGGTCCCTCCGGTTCTGGATTGTCTGAGAATCGATCTTCTGTCGCGGACC
CGTCCAGCACGAACCAGCCCAACCCCGGCTTGTCGAGTTCGGAACCTTTGGGTGATAATCGGTCA
GTTTAAAGAACGACCCATTAAACAGTCGATGTGAATAACAGAACT



Found at i:4072 original size:3 final size:3

*************Found a new SSR********************
 Sequences: ctg1113140267147
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        896 ATACAAGCGA

                     
        906 AAAAAGGCG
          1 AAAAAGGCG

                     
        915 AAAAAGGCG
          1 AAAAAGGCG

                   
        924 AAAAAGG
          1 AAAAAGG

        931 ATGGAGTAGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.60, C:0.08, G:0.32, T:0.00


Consensus pattern (9 bp):   
AAAAAGGCG

Left flanking sequence: Indices 406 -- 905
TCCCAAAGCTGAATGTACTCATTTTTTATATGAATGTAGCGTAGTGCTGTTTTAATGGTGCATGG
GAGTATTTTGGGGAAGGGTGTCGGCCAGTGATCGTTGAGCTTGAGCGCCAATGAACCGTAATATG
TCTTTATTTGAAATAGAAGCTGGTTTGTCAAGTGTTTGCTGAGCAAAGCGTGGCGCTAGGTCTGC
CACGAGCGACGACAGGCAATGGACGATATTTACCAGTTTGAGCTCCTTTCTTTGACTTCAACAGT
AGCCAAGGAGATTCTCAACAATGCAGGTATGTATAGCACTCAATGAACTTAATCTTCTGCTCACT
TTTCGTAGGCATCAACGACAAGACTCTGGCAGAATTCATAATCAGCCTACACGAACAATCCAAAA
CGCAAGATGCATTCAAAAAGAAACTAAAAGAAGTTGGCGCCGACTTTCCTGAATCGTTTGTCGAA
AACCTGGACCGACTCATCCTCTCCCTCCACCCGAAATACAAGCGA


Right flanking sequence: Indices 931 -- 1430
ATGGAGTAGAAACCGCTGAAGAATCAGACACGAAACGTCGACTGTTTCCTGGGCTCGCTTTGCCT
GATCAACCATGGCAGGCGTCAAACGAGTTTGGAAAGGACAAGGGAAAGGATGCAGAGAAGGATGC
AGCGAGCAAGGAGGTCGATGATTTGATGTCCCAGCTCGAGGGTGTGGCAAAGAAAAAGGCCGCCC
GGCCCACAGCGGCCGATTTTATCGAGCCCGGGCCTCCCAGCAAGCGTCCAAGGATGGAAATGGAA
ATCGATAGTCCCCCACGAGGAGGGCCCAGTAGGGGCAGGGATTGGGATGATAGAGGAAGGGGCCG
TGACTATGAAGACCGCGGCCGCCGGTCCCGACCAACACTCGATGAGAAACCCGTACTTTACAAGA
TCTACGATGGCACCGTCCAGGGAATCAAAGATTTTGGCGCGTTTGTCCAGCTCGAGGGTGTCCAA
GGCAGAGTTCAAGGTGCGTTGCTTGCTATATTTTATTTCACCTAG



Found at i:20890 original size:7 final size:7

*************Found a new SSR********************
 Sequences: ctg1113140267228
    Period size: 9  Copynumber: 7.2  Consensus size: 9

       1796 GGGGTGGGGG

                     
       1806 CGAGCCTGA
          1 CGAGCCTGA

                     
       1815 CGAGCCTGA
          1 CGAGCCTGA

               *     
       1824 CGAACCTGA
          1 CGAGCCTGA

                     
       1833 CGAGCCTGA
          1 CGAGCCTGA

               *     
       1842 CGAACCTGA
          1 CGAGCCTGA

                     
       1851 CGAGCCTGA
          1 CGAGCCTGA

                     
       1860 CGAGCCTGA
          1 CGAGCCTGA

              
       1869 CG
          1 CG

       1871 GCCATGATGG


Statistics
Matches: 52,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   9   52  1.00

ACGTcount: A:0.25, C:0.34, G:0.31, T:0.11


Consensus pattern (9 bp):   
CGAGCCTGA

Left flanking sequence: Indices 1306 -- 1805
AGCATACGACCTACAAGACGACCTACAAGATGTCTCTATGCGGTCCTACCATCCGAGTCCCGAAA
TTTCACCCTGTCGCTCTCTTGGACGCCCTAACTCGCCGTCGGGCTCCATGTCGATCTCTGTGGCT
CAAGCTAGTGGTCACCTTGGTTCTGGCTCTCACTCCGGCTCTATGGCTCTATCTGGCGCTGGTTC
TGATTGTGGTTCTCAGCTCAACTCCCCCTCATTATGTCGGCTCTCAAGCTTCCCCCCTGTGGATG
TCAGCTCGCCAGACAGGCAGTCATTTCCCCCTGTAGCCCCTTCCCTCGTTGACTTAACATCTGAA
ACAGAAAACCCGCACTTGCATACTGTGAGTGCAAGTACAGATGTCGATTTTTTCGGTCAATATTT
GGCCGACTTGGCAATATCTGGTGCTTCCAAAGCCAGCCGCCCGAATGTCTGCGTCAACAGTGATC
ACGAAAATGACCCATTGGACAGCGGCAACAAGCTAGGGGTGGGGG


Right flanking sequence: Indices 1871 -- 2370
GCCATGATGGCGCACAGGTCGATAATCCCATGATTCAGGCCCCACCTGATAATCCTGGCAGTGAT
CCTGGTGGTGGCCCTGGAGATCCTGGTGGAGATGGAGCTAGGTTCGACATACCAGCATTAGAGGA
GTACCCTACCCTGCACAACATCTATCTACGGACATGGGCTCAATACACATTCCATGGCGTGACGC
AGGAAACCATCCAAGATATCCTTGAGTCTCACAAGTCTGCACTCCTAGCAGGTGCAGAAGTATAT
TCCCCCGAATTCATCGATCAGGTCAATAAAATGCCAACGACTCTGCGGTCCCTTGAGCGGCGTCT
TGGAATGGACTTCTCGGACCTAATCACCATATACCCAGTGTGCCCTGAATGTGGAAAGCAATACA
CGATGGAGGAGCTATATGCGCTCCGTGGCCCCCAATGCCAGCGACACGTTGGAGACCAGTGCACT
GGTATATTATATACGGAAAGCAAACTTGCTGACGGCACTCGGAAG



Done.

rsol.ctg.fasta.s5240.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267235

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 13385
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26


Found at i:7714 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140267255
    Period size: 9  Copynumber: 6.7  Consensus size: 9

      13186 CGACCCATGC

                     
      13196 TCCAGCCCT
          1 TCCAGCCCT

                     
      13205 TCCAGCCCT
          1 TCCAGCCCT

                     
      13214 TCCAGCCCT
          1 TCCAGCCCT

                *    
      13223 TCCAACCCT
          1 TCCAGCCCT

                  *  
      13232 TCCAGCTCT
          1 TCCAGCCCT

                  *  
      13241 TCCAGCTCT
          1 TCCAGCCCT

                  
      13250 TCCAGC
          1 TCCAGC

      13256 TCCTGCCCAG


Statistics
Matches: 48,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   9   48  1.00

ACGTcount: A:0.13, C:0.52, G:0.10, T:0.25


Consensus pattern (9 bp):   
TCCAGCCCT

Left flanking sequence: Indices 12696 -- 13195
CCTCCTGCCGGACCCAGTCAACTCATAGGTTATCCGGCTCAAGAAAACCAGTGGGGCCAAGGGAT
GGGTGCGTGATACGACCGATCTTGTTTACATCTGCTCACTATTCATCTCTAGCTGGGCCATCGAT
ATACCCAACCCAAACCAACCACTACGACCCCGCTTCTTTGCTCGGGCAATACCAGTCCAACCATT
ATGGTACGTTCTGAGCTTTGGATCGGGACTCTCGGTTAACCAGACCATACTGTAGACCAAGCACC
CTACCCGGATCAGTTTACGCTCATGGGACCTCCCGCTGTCCCCACGTTCCCATCTCAAGTAGCAG
GCGTAGATGCCTTTTCTCAGTCGACCTACCTAGCTCTAGACCAAGTCAACCCAATGCCAATGGAA
CCTATTGCTCCGGCCCCGGCCCCGGCCCTAACTCCTGCTGCAGTTCATGTTCCAGTTCCAGCTCT
TGCTCCGGCTCATGTTCCAGCTCCAGCTCTTGCTCCGACCCATGC


Right flanking sequence: Indices 13256 -- 13755
TCCTGCCCAGGCTCCCCAAACCGGCGGCCTAGTCCTCCCCACGCTCATTCCCCGCGTCCAGTCCG
GCTTCAAGCGCAAACACACACTCAAACGCCAAGTCAGCACCGCGAGCGCCATGTCCATCGATGGC
GACCAAGGCCGCCCCACCAAGCGTCGCAAAACCCGAGGAGCCCCATTCATCCCCAACGCAGAATG
GCAACAGCTGCAACAGCTCAATCTCAACGCGCCAGGAAAGTACTATACCCATCCTGCATCCTACG
AGCCCAACTACTCGGGAACCGGAGACGCGGTCAAGCGCTATGCGTGCCTTTATATCGATCCTTTC
AACGACACCCAGTGCTGGCGGAAAAAGCACAACGCTCAGCCTGAAGAGTGGCTGAGTTCGCTCGA
CGGACGGAAGGAAAAGGGGTTCTTCCCGAGGAACGAGGCCGAGATGCTTCGTCATTTGGCGATGC
ATCGGAAAGAGGATGTGTCGGCTGCGAGGGCGGTCCCGGGGCTCG



Found at i:16078 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140267255
    Period size: 9  Copynumber: 11.6  Consensus size: 9

      15990 TTCGTGGTGT

                     
      16000 TCGTGATGC
          1 TCGTGATGC

            *        
      16009 CCGTGATGC
          1 TCGTGATGC

                     
      16018 TCGTGATGC
          1 TCGTGATGC

                  *  
      16027 T-G-G-GGC
          1 TCGTGATGC

              *  *  *
      16033 TCATGGTGT
          1 TCGTGATGC

                     
      16042 TCGTGATG-
          1 TCGTGATGC

             *        
      16050 TTGATGATGC
          1 TCG-TGATGC

                 *   
      16060 TCGTGGTGC
          1 TCGTGATGC

                     
      16069 TCGTGATGC
          1 TCGTGATGC

                     
      16078 TCGTGATGC
          1 TCGTGATGC

                     
      16087 TCGTGATGC
          1 TCGTGATGC

                 
      16096 TCGTG
          1 TCGTG

      16101 GTGGTGTTCT


Statistics
Matches: 75,  Mismatches: 12, Indels: 10
        0.77            0.12        0.10

Matches are distributed among these distances:
   6    3  0.04
   7    1  0.01
   8    4  0.05
   9   65  0.87
  10    2  0.03

ACGTcount: A:0.10, C:0.20, G:0.37, T:0.34


Consensus pattern (9 bp):   
TCGTGATGC

Left flanking sequence: Indices 15500 -- 15999
GAAGTATGTAGAGCCAAGCGCACGTGGAGGCGATGGGGGCCTTTCGAGCGGAGGAGGAGTAATAG
GCATGATAAGTTCCTCCTTGACCTTTTTGGGCGGAGGCGGCCTTCTTTCTGGGAACGCTCGTGTT
GGCGCAGGACGCTCGGCCTCTTCCCATGGGAACACGGCCTTGATACGGGCATGATCAGGCTCGTA
TCCGTTGACCGTCAGATCCGAGTATTGTCCCTGGTTAATGAGCGCCGGTGGAATGTATTGTTCAG
GCTCGGGAGGCTGGAAGAATTGTTCAGGAGCCCCAGAATACTCTTCCCCGTGATGATAGTCCTTG
GTCGCAGGCATGTCCCACTGGTTTTCGTACCACGCATTAACCGGGAAGTTATCCGCAGCAGGGGC
GGTGGTGGGGGGCGGTTCGTATGCGGGATTCCACGCGATAATGGGTGGCGAGGGAGGGCGATGAG
GAAGGCTCATGGTGGTGGTGATGGTGGTGATGGTGTTCGTGGTGT


Right flanking sequence: Indices 16101 -- 16600
GTGGTGTTCTTGAGATGGAGGAGGAGGCGGGGCATGGTGATGTTCTTCGTGGTGGTGGTGGTGAG
TCTCTGCAGGTGTGTAAACAGGCTCTGGCTCGGGAGGCGGTGGTGGACGCATCAACGTGAAACGG
CCTTCCATTGGCAGGCTAACGTAAGATCCTTCACCAGCGCGTACAGCACCTGCATGCCCAGCTCC
ATGTAGAGCAAGGCGACGAAGTTCGTCCAGAGAGGCGGGCTGAGAAGTTGCCGACTGCCCTTCAG
ACGGAGCGGAAGATATCGCAACGTGATAGGTGTGCGGTGGAACGACGTGTGGGTACTGATTCAAC
TGATTGACTGGCGGTTTGGTGGCACCCGAGTCGACACCACCGTCGTACGCGGTAAACTCCTGGCC
TCCCTTGGCTCCTTCCCATGCACTTTCATATTTGTGTACCTCAAATTCGCTCTTGGGGGCATCTT
TCGCATCGAGTTCGGCACGGAAGTGAGCATCATACACAGCGTACC



Found at i:16084 original size:27 final size:27

*************Found a new SSR********************
 Sequences: ctg1113140267257
    Period size: 9  Copynumber: 8.9  Consensus size: 9

       8498 GACCTTGTCA

                *    
       8508 CCCTTATCG
          1 CCCTCATCG

                 *  *
       8517 CCCTCGTCA
          1 CCCTCATCG

                     
       8526 CCCTCATCG
          1 CCCTCATCG

                     
       8535 CCCTCATCG
          1 CCCTCATCG

            *  *   * 
       8544 ACCGCATTG
          1 CCCTCATCG

                      
       8553 TCCC-CATCG
          1 -CCCTCATCG

            *    *   
       8562 ACCTCGTCG
          1 CCCTCATCG

            *        
       8571 ACCTCATCG
          1 CCCTCATCG

            *       
       8580 ACCTCATC
          1 CCCTCATC

       8588 AAACTCATCG


Statistics
Matches: 56,  Mismatches: 13, Indels: 4
        0.77            0.18        0.05

Matches are distributed among these distances:
   8    2  0.04
   9   52  0.93
  10    2  0.04

ACGTcount: A:0.15, C:0.49, G:0.12, T:0.24


Consensus pattern (9 bp):   
CCCTCATCG

Left flanking sequence: Indices 8008 -- 8507
CAATCACCTTGCGCTTTTTGGACTCGGATTTTGGGTTGATATCGACATTGATGAGCTCGAATGAT
GAGGTAGCTCTACTCAATGGAGATGGCAGAGGTTGGGGCTGGGGGATTGGTTGTTTCTTGGCTGG
TGTCGCAAGTGTGGATGGTTTGGTGAGGCTAGTCGACGACCTTGAGCCAGAGCCTGATCCTTGCT
TGGTGGACAGAGACTTCGACATTGGGAAAGGGGTAGGAGCAGACTTAAGAGACGTCGCAGGTACT
GGTGGCTGTTGACGATTTAAAGCACCAAAAACTTCAAGAAGGGTCGCCTGAGCATCGGGCAACGT
GTGCGCTGATGAAGTGGCTATATATGTCAGGTCAGTAGGGCGGTCAATCCCCCAAAGCTAGGACT
TACCAGTGGTAGATTGGGGGTAAACAGTTACCTCTGGTTCGGTTTCAGCCTCTGAGGGACCGTAG
ATCTCCTCCCCAACAGGCTCGCCCTCGATATCCTGGACCTTGTCA


Right flanking sequence: Indices 8588 -- 9087
AAACTCATCGAGCTCAGCATCTTCATCCGGTAAGGGAGCCTTGAAGTTAGGGGGTGCATTGAAAT
TTAGTCCAAGCTCCTTCATCTCCTTCTCTGCACGCTCGAACTCTTCATCCAGTGAGCCAAAGTGA
ACACGCTTCTCAGCGTCGTTCATCATATGCATTCCAATCGATTTGCTGATTTCGTTGTTGACTAC
AATAGCTAGCTTGATAACTGGATGAACCCTCTTGCGTCCAGTGGGCTTCGGGTGTTTCAAGAGCT
AACCCAAGGTAGGTCGGTCATGAGCTCCGTGACACAAGAATATGACAATAGGACTTACCACTGTG
TAATGACTTTTGCACGATTCAGGACTTCGGTGAGTTGGCCCCTGACTACTAAGCTCCTCGCCGAC
CTCCTTCCATTCGTCGCTTCCAGTAGGCTCGATAGCAGCAATGATACGAAGGAGGAGGATATACT
CGAATATCTTCCATTGAACAGCTCCAATGCTTCGTCCGCCGCGCT



Found at i:8527 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140267269
    Period size: 9  Copynumber: 4.2  Consensus size: 9

      21422 TGCATGTTGG

                     
      21432 CGGGCATTC
          1 CGGGCATTC

                     
      21441 CGGGCATTC
          1 CGGGCATTC

                     
      21450 CGGGCATTC
          1 CGGGCATTC

                     
      21459 CGGGCATTC
          1 CGGGCATTC

              
      21468 CG
          1 CG

      21470 CCTCCACCAC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   29  1.00

ACGTcount: A:0.11, C:0.34, G:0.34, T:0.21


Consensus pattern (9 bp):   
CGGGCATTC

Left flanking sequence: Indices 20932 -- 21431
ATGGGCTATCAAACCGTCAGTCAATTTGACACGAAAATAAACCTAGAGCCAACTCACCACTCCAC
CATAGGCGCCGGCTCCAGCCGCTGCTGCTGCTGCTACGGGTGGAATCATGCTCCCGGGCGCACCG
GTATCAGCTGCGCTCCGGTCCTTGCCCCAGCTGCACTTGATCGGACGCCCGTGCACAAGCTGGCC
CTGCAATTGCACAATCGCCATGGCCGCATTCTCGTGCGTGTCCAGCTTGACAAACGCAAACCCTC
GATCGGCCTGCATGCGGATCTCGGACAGATAGCCAATCGATTGGAAGAGTGGGATCAAATCTGCC
TGGGTGCAGTAGGGAACTAGGTTGCCGACGTAGACGGTCGTGTTGTAGGCCGGCGTTTGGGAAAC
AATCGATTCATACGAGATCGGGCCACCTTGGAAACTCATGGGTGCGGGGGAACCTCCCATCGGGC
CACCGACCATGGAGGCCATTGGGTCACCCATCGATTGCATGTTGG


Right flanking sequence: Indices 21470 -- 21969
CCTCCACCACCCGACTGAGTCTTTTGGTTTGCCCAATTGACGCGGATCGCACGTGAACCGAGCCA
TTCGCCGTTCATAGTCGCAATGGCCTGTTCGGCATCGGTCTTGTCCCGGAACGCAAGGAACCCGT
AGCCACGCGATTTGCCCGAGTTCATATCCCACATGACACGTGCATCGCTGAGACTGCCAAACGCT
GTAAAGGCCTTGCCGAGGACTTCGTCGCTGACTTCGGGAGAAAGGTCCCCGACGAATACGTGAAA
GTGATTGCTCGTGTCCTCCTTGTTTTGGGTGCCTTGGTAGGCCCAGTTCACGCGGATTTCAGTGT
CAAATATCTTTCGGCCGTTGAGCGTCTGAAGCGCGGTTTCGGCAGCACGCATGTCCATGTACTCG
ACGAATCCATAGTTTTGGCCCCCGTGCTGATAGTTGCGGTCCGGAATGATTTTTACGTGCTGCAC
AGGGCCGGCCACTGCGAAAATCTCAGTCAGCATGTACTCTGTCAC



Found at i:45396 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140267288
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       4784 AAGCCCGCCC

                     
       4794 CCGCCCCTA
          1 CCGCCCCTA

                     
       4803 CCGCCCCTA
          1 CCGCCCCTA

                    
       4812 CCGCCCCT
          1 CCGCCCCT

       4820 GCTACCTGAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.08, C:0.69, G:0.12, T:0.12


Consensus pattern (9 bp):   
CCGCCCCTA

Left flanking sequence: Indices 4294 -- 4793
AATTGATCGGGTGTGTAAATGTACACTCTGCAAGCAAACACCGAAAGGCTATCGTATTCTCAAAT
ACTCGGCCTGGTATAGACACCAAACCGCTGAAAAAGCCTTGAAAGAGCGTCGGATCTACCAAGCA
GCGTTGCTATATGATGCTGACGCAGCTGCACGCTCTAATATACAGGGGCTGGAGCAAGCCCAGTC
CCATCCCCAGTCCCATCCCCAATCCCAACCAACATCACCTGGTCCAAGCCAGCAAGAAGAGCACG
AAGAGACCCAATTGAGCATGGATGGGGCTGAACAAGGTTTGGATAGTACTTTTGTCTTATGTCAT
GGAGTAATAACCCGCATAATATGAAGAAACGGCTGCCAACGCAGTTGAAGACCCCCCTGCCTTTG
CTCAAGCGGACTTATGGGAGCCAGGGACGCCACCCAGCCCTGTTAATCCCATTCAGGAGGAAGAG
TTCCCACCTAGCCCAAGGGAGCGACTTCACACGGAAAGCCCGCCC


Right flanking sequence: Indices 4820 -- 5319
GCTACCTGAGCCAGAGCCGGAGCCGGAGCCGGAGCCGGAGCCGGAGCCGGAACTGGAACTGGAAC
TAGACTACGCATTGCGTGCCACAATGCTCAATCCGTTTCATTACAGCACTAAAGTAACCCAGAGG
ATGACAATGTATCGATGAATGTGTATGCGTGAATCAAAGATCCAGGAACCAATTATAAATGACGC
GTGCGCAGCTTTCAAAAAGCGTCACACGAGCAAGGTGCCATGCACGGCCACGTGCATTTCTCTAG
TTTCAAATAAAGAGATAACGGCTGATTTCCTTTTCGAGAACGCTTGGGAACCAGGTAAAGCTAGG
CTAAGCTATCCCATCATTAGTGTTGCGGACGAGGCGAGCGCCCCCGTGGTGACCTCGCCTCGGAA
GCTGGCCGATCGCGAGGTAGGGACAGTGCGATCGAGTCAGGGTAGTCCACTGTGGCGAGGTATTA
CACATCTCGGTGATTATGCTTAGGTAAATTTCCTTTTTGGGTGCG



Found at i:4842 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140267294
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       3716 TTACACATTC

                     
       3726 CGCTTAGCT
          1 CGCTTAGCT

                     
       3735 CGCTTAGCT
          1 CGCTTAGCT

                   
       3744 CGCTTAG
          1 CGCTTAG

       3751 TTCCGGCATT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.12, C:0.32, G:0.24, T:0.32


Consensus pattern (9 bp):   
CGCTTAGCT

Left flanking sequence: Indices 3226 -- 3725
TCGAATACTTGCAGTAGCAAGAAACGTTATGTGTCTTGGTTGTAAAACAAACTTCCAGCGTTCCG
CCTCTTCTCGATTCCTAAGGGGATTGGCTGGCTGCGCGTTGGACTTAAACTTCACATAAGGTCGC
ACGGAGTAGCGCAGTAGGTCCGCCTCGGCCAGCCTTAAGTAACACGCATTCATCGAGAGTGGAGA
TGGTCGGGATCGCTGAGTCGCACATTCTTCTGGTTGTGTTAAGTACACGTAATCAACTCGCGCCC
AGGCTGGGTAGAATTTCAAGAAGAACAAAAGAACAAAACGTGTGAAGCTTTTTACGCTCGGGCTG
TGGCTACCAATTCACCAATCATATTCCTCGAAGCGTAGTCCACAAAGTTTCTAACCCCATTACAC
TATATTAATCTGGTTGATTGCCTCAAGCCGTAGATTCTTTTCGCCCAGCCACTCACTGAGGGGGG
GGGGGGGTTTGAACAAGATTCTGTTCGAACCATTCTTACACATTC


Right flanking sequence: Indices 3751 -- 4250
TTCCGGCATTCACCATATATCCCGCTATTCACGGGCTATATAAACGCGTGCAGTTCAACATACAA
CACATAGCAATTTACACCTTTCTTTCCTCACGAGCTCCAGGAGCGCTTCTTTGGAGTTAAGTCGC
ATATACCCACGGAGTCAAGTTTTATCTAGCTTTATAAAAATAACGCATTGGTAAGAAAAGCGACT
AAGATGGAGAGCATAGGTTCCTTTGATGGACCAGATCCCAACCCGGTACGTCTAGCAAGTATTTT
AGTGGAGTTAACTTATTAGTTCTTACGCATGTATTCCAGTCACACCATAGGAACCAACCTCTTAT
CTATTGTTACTGTGCAAAATGCAGAGGCAAGAAAAAGCAAAAACCAAGCACAATCGATGACCACA
AGCTTCGCTATCCACGCTGGACTCCTAGTCCCGAGCGAGTGGACAATACTGTGCCTCGAATAGGG
ACTTACAGAGCCGAAAGGCTAGCATCTGCTGGGTCTTCTTATCAA


Done.

rsol.ctg.fasta.s5302.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267297

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 22096
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24


Found at i:59 original size:16 final size:16

*************Found a new SSR********************
 Sequences: ctg1113140267297
    Period size: 9  Copynumber: 5.6  Consensus size: 9

       5292 CAACAAAGAC

                     
       5302 AGAAAAAAA
          1 AGAAAAAAA

                     
       5311 AG-AAAAAA
          1 AGAAAAAAA

                     
       5319 AG-AAAAAA
          1 AGAAAAAAA

              ***    
       5327 AGGGCAAAA
          1 AGAAAAAAA

                     
       5336 AGAAAAAAA
          1 AGAAAAAAA

                 
       5345 AGAAA
          1 AGAAA

       5350 CAGCCAATCG


Statistics
Matches: 33,  Mismatches: 5, Indels: 2
        0.82            0.12        0.05

Matches are distributed among these distances:
   8   16  0.48
   9   17  0.52

ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00


Consensus pattern (9 bp):   
AGAAAAAAA

Left flanking sequence: Indices 4802 -- 5301
AGAAAAAGGCGGCTTACGAATGGGTTGAAGCTACCTTGTCGTACTAGATTTCAGGTTGCATACAA
CCACACTTTGGTTTCCGACTGATTACAGTATCCGATAATCACGCGCAAGGCCCCTCGATGGAGCA
TAATCATTGGGTGCAAAGCAGCGCCATGAAGTTTCGATTTGTACATCTTACTTTTGACTGTACTC
ACAGCACTCGCGACTATTGTATCATACACTCCTTAATTCATTATTAATTCCTTGGCTATTTTAGC
GCGGCGAGTGAGAGTTGCACAGGACCCGGGACACCACACGAGAGCCAAATGTCCTTTCACTCTGT
CGACTTGATTACGCACTCGTTCGCGTACGTCTATACACATTTTGTCGTGTACTTCAAGCTTCAAA
TCTCACGCATACACCAACTTGCCCTCACACACACACACTCACACACAATTCCATCAAAGCAGAAA
TCCCATTCACAACACACAAAACAGGCATCTCCACCCAACAAAGAC


Right flanking sequence: Indices 5350 -- 5849
CAGCCAATCGATCGACTGCAAAATAGACTTGCGTAAGGGCATGACGGATAAGTGGCCCGGTCCTA
TAGAAAGAAAAAAAAAAAAGAGGACAGGGTAATAATGACAAATGACGTAGAAACAACGAGCGACA
AGCCAAACGAGATGGATGGTTTCCGCAGAATCAGAATCAGAATCGGTGGGGGCGGGTCCGTAAAC
GAGCAGTCGCCCTAGTGGAAAGCAAAGAGAGACAGGAGACAGGAGAGAGAGAGAGCCATGTACAA
GAACCACACCCAAGGACAGTAACAAATGAATTATGCGGAAAAACACCTCGCCAGGGGGGGTTGGT
TCCGTAAGGCTTGGTAGATAGGTGCGAAATAGAGAGATAAACTCGTGTAAAGCGGGACAGACGAA
ACTCGTAGAGGGCAATAGGCAAATCGTGTAAAGCAGGTAAAAACTCGTGGAGAGGAAAAAAAGTA
GGTAGATCGTCCGTGGTCGAGGTGGCGGTCGAGGGATCAAAGGGG



Found at i:5318 original size:8 final size:8

*************Found a new SSR********************
 Sequences: ctg1113140267349
    Period size: 9  Copynumber: 4.9  Consensus size: 9

      13984 AGCGGGAACA

                     
      13994 GCAGGAGCT
          1 GCAGGAGCT

                     
      14003 GCAGGAGCT
          1 GCAGGAGCT

                     
      14012 GCAGGAGCT
          1 GCAGGAGCT

                     
      14021 GCAGGAGCT
          1 GCAGGAGCT

                    
      14030 GCAGGAGC
          1 GCAGGAGC

      14038 AGGGGCGGCT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   35  1.00

ACGTcount: A:0.23, C:0.23, G:0.45, T:0.09


Consensus pattern (9 bp):   
GCAGGAGCT

Left flanking sequence: Indices 13494 -- 13993
CGTCTGCGATCCGCATTGTATAGCCCCAATAAATTATCATATGATTATCAACGTTGAATATGTCG
AATCTGACTGATGTCATTGTCCTTAGTACAAACGTTTAGTCAAGTATTCTTGTGCATTTATCAAG
ATTGAAATAGAGGGTCGAAGACACGGGTATACGTACCAGTAAACTACCACAGTGAGACGTTCAAA
AAAAAACAGTCATGCATAGCTCAAGTACATACAAAAGGATGATTGGGACATGTTCATACGTTCAC
CACAAATATATTGCTTGTTCAATTTACGATCGCCCAGCCGAACCAAATCCACTGCCCCTTCCCCG
GCTCGGTCGCCATTTCGGCTGCGACGGTACGGTCTGGAACCCATCATTGTCGGCTGCTGCGGTCG
ATGGTTGCTCGGACTGGGGGGTGGATGAAGGATTGGGAGAACCACCGGGACCTGCGGTCCTAGCT
GCCTCGCGTGCACGCCACCCGCCACCAGCAGAAGCAGCGGGAACA


Right flanking sequence: Indices 14038 -- 14537
AGGGGCGGCTGCGGCGGGAGCAGGTGAAGCTGGACTGCCAGTGCGAACGGGAGGCTCCGCTGCCG
CTCGGCGAGCAGGTGGTACCCACTTTCCAGCTGCGGGTGTAGGGGCAGGAGAGGCACCGCCAGAT
GCTTGAGTGCTGACTGGAGCCGCTGACGGCCTACGCCAGGCACCACCGGCCGGCTCGGCACCATT
TGGTTTTGGCGAGGACGTCCCCGCTGGTTGCGCACGACGTTCCATACGACGTTTTTCGGCTTCTT
CTTCGTACCTGAGCTTCGCAAGTGCAGCCTCCTGCTCTTTGCGCTTGGCTTCGAGCTGCGCCTCG
CGTTTGGCGTTGGCTGCAGCGGCAGTAGCCTCTTCTTCGGCACGCTTGGCCTCCTCTGCTGCACG
TCGTTCTATAATCGCTTGTCAAATGGATAGTTTACTGAATTCATTCGTATTATGCTTACCTTCCT
CCAAACGGGCCTCCTCCGCAGCGATGCCTGATGAGACGGTTAGCT



Found at i:20935 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140267349
    Period size: 9  Copynumber: 3.2  Consensus size: 9

      20911 CGGAGAACCG

                     
      20921 CTATGACCA
          1 CTATGACCA

                     
      20930 CTATGACCA
          1 CTATGACCA

                     
      20939 CTATGACCA
          1 CTATGACCA

              
      20948 CT
          1 CT

      20950 GCCACTGGCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.31, C:0.34, G:0.10, T:0.24


Consensus pattern (9 bp):   
CTATGACCA

Left flanking sequence: Indices 20421 -- 20920
GATTTGGGCTTCGAGCGACGGCCCTTTTTTAGCATGTATGCACTACGAGGCCCGCTAGGCCCGAC
CTTGGGTTTCGGCATGATGATCTACAAGAGAGTCGAGAGGTTAAAGTTGAATGTGAGCGCATGAG
AAAACGCACCTGAGACAACAATGCTATGCGCTTTGCGAAGATAGAGCGCGACTTGAGGACATTGC
TGGAGGCGGGGGCAGACAGCATACTGAATAGGACGAGCGAACTATGACTCGGAGGAATGAGAGCA
GAGGAGCGCTGAGGACAGTGGTCGGATAGCAGACTGTCTTATATCCTGTCCTTTCTTTAGGAGTG
ATTCGGGAAATACCGATCCCTATTATCTAAGTTAGGCAGATGTGCATGAAAGAACACTCAGAATG
GGGAAGCCTCATTGCCTCTAAGCTTGGACCGCGTCAGCCGGGACTTGGGCCGCGGCAACTAGCTG
TTCCAAAGATGGTAAGAAAAAGGTACTGGTTTAACCGGAGAACCG


Right flanking sequence: Indices 20950 -- 21449
GCCACTGGCATAGCAATGTACTTTTGTCACTATGTAATTCTCTAGAGTTCTGTTGATGACCTCGT
GCTCCCAGATTATGCCCTCAGATAATAAAGTTCCGATACAACGGATAATTTTAACACAATAGTAA
GAATGCCGCAGATCAAAACACCCTAGCTCCCGCTGCAAACTGGCGCATTCATCTAGATCTACCAA
CCAAAATCTGTGGCTTGGGGTTCAGCCAAGTAACTTTTCGAGTATCCAGACCTGGCTAGTGCCCC
AGCCATAAATGAGTCTGAGAATTCAACGCGTGTGTGTGTAACAACAATGATTTTCTTAACAATGT
TTGCATGTGTTTTTTAATCGCTCCAATGAAGGAAGTTGCCCAAATCGCGAAACACTGAGACCGAA
TTCGAGGAGTAGAAGGTCAATTTAAGCACATCTAAGCACTAAGGAGAATCGCAAAATCAGCGGTA
CAATAGAATTAACACCGACACGCCAGCTATGCTCGGGCCTTCTGT


Done.

rsol.ctg.fasta.s5355.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267350

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 12969
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25


Found at i:9152 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140267350
    Period size: 9  Copynumber: 4.4  Consensus size: 9

       9125 GGCATACTGT

                *    
       9135 GTACGTTGG
          1 GTACATTGG

                     
       9144 GTACATTGG
          1 GTACATTGG

                     
       9153 GTACATTGG
          1 GTACATTGG

                     
       9162 GTACATTGG
          1 GTACATTGG

                
       9171 GTAC
          1 GTAC

       9175 TGACGGAGCA


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   9   30  1.00

ACGTcount: A:0.20, C:0.12, G:0.35, T:0.33


Consensus pattern (9 bp):   
GTACATTGG

Left flanking sequence: Indices 8635 -- 9134
CGTCCTAGCATGCCCACTCCTAACCCCCATCGTTCCAGCTCTAGTTCGCTCAGTAGCCTTTATAG
TCTCTCCAACCGCTGCATCCGATTCGTCGACGGATCGCCTGCGAGGAATCGCCGGATTCATCTGG
ATATTTCGTGCTGCCCCAGCAATGCGAATCGGAGCATGGCCCATATCAGAATGCGAAAAATGGGT
GAGCTCGGGTTTTGATAGCGGGTTGGATGGGGTATGCCCGAGGTCGGATTTGACGCCATGTCCAG
CATCGGAATAGGACTGAGTGGTGTATACAGACGAAACATTACCCGCGTCTGATCCGCTGCGTGTA
TTTCGGCTGAGCTCTGAAGTAAACATGTCCGCGATCCTTAGTACCCGTTCCTCACGCTCCTTATC
CCTAATCTGCGGCGAGTCTCCCTTGCCACTCTGTGGGCTCGTGCTAGAGAGTTGTCCAGATAAGC
CCGCTCCTTTGTCCAGCTCGAGCGTTAACACCGGTGGCATACTGT


Right flanking sequence: Indices 9175 -- 9674
TGACGGAGCATCTGCCGGGTTTGCCTTTGCTTTTTGGCCTTTGAGAGAAAGCTTGAATGAGCGCA
TAGTGCGTAAAAGCATTCCCTCTTTGTCCTTGGCATGGCTCGAGGGAGTTTCATTGGAGTTGGCT
GTGGAAGTAGATGGGGAGTTGGGCGTATGGCCGGAAGGCCCTCCGATCGGCGAGTTGCGAGCACT
GTCATCATCCTCAAAGACGGATCGGGGTTCATTTGACGCGAGCGATGGCGAGAACATGGACTGGG
TGAAAGTCCCGGCTGAGGAGGCGGATACGCCAGATACAACGGATAGACCAGATACAGACGCGTCC
GATCTCAACGTTTCCGCCGAAATCGCGCTTGGAAATGGCAGGAACGGTAGCGTGGGTGGTGCTCC
GGATGATCCGATGACGTTCGGGTTCCCACTTCCCCCACTGGCGCTCCCCTTGCGACTAGGGACCG
ACTCTGGTTCACTTTCCCCTCCGCGAGGTGCCTTGACCAATTTCT



Done.

rsol.ctg.fasta.s5356.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267351

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 12185
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26


Found at i:10553 original size:19 final size:19

*************Found a new SSR********************
 Sequences: ctg1113140267390
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       4365 TGGAAGGCTC

                     
       4375 CCAGAGACA
          1 CCAGAGACA

                     
       4384 CCAGAGACA
          1 CCAGAGACA

                   
       4393 CCAGAGA
          1 CCAGAGA

       4400 GGGGGGACCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.44, C:0.32, G:0.24, T:0.00


Consensus pattern (9 bp):   
CCAGAGACA

Left flanking sequence: Indices 3875 -- 4374
AGATATGTCCCCACCGCGTCGGCGGATTGTGTGACCTGGGACACTCGAGCTCCAACGTCGAAATC
AAATTAAGACGTCTAGCAGACGAATGTGTCAGTACTGGGACGACTATTGAGGTCGTTGGTGGCCG
GCTGAACTTCGGGAGACTGTAATTCCATGTTTCAGCCTGAGGTGAATCCACGGTGACTCCGGGGG
TTCGAAACTTCCTCTCCCCCTCAATCTACGGCCTAAATAAGATAGTTAGATACCATAATGGTCAA
AGTTGTAGTCGAACAGCATCAAATACATCGTCATAACTGTTAATCAATCGATGCGCATATTGGCT
AACCCAATCATTGGTCAACTGGTAGTATATATGCGACCTTTTTGTAGAAGTTTCGCAACCGAAAC
TTGATAAATGAGAATATTTCGACAGCTTGCACTGGATTGATTGAATATGGAAGGGGTTTCTTCGC
ATCGTGTGCCTACATCTGCAAAGATGGTGCTGCTCTGGAAGGCTC


Right flanking sequence: Indices 4400 -- 4899
GGGGGGACCTTCTCTGGAAGACTCCCAGAGATGAGTCAGGGTCTAGTTCTCAGCAGCTATAGTTC
GTCTGTATTTGTCCTCATTTGTACATATTATGTTTTCAATTCAATTCAACTTTCATTTCCTAAAT
ATGCTCTCCCGGGGCTATAGCTACTGAATACTAGACCCTGATTCGTCTCTGGGAGGCTTCCAGAG
AACATCAGGAAAACCCCAAAAGCAGAAAGTATGTTTCTGCACAGCCATTAGATTTCTGCATGGGA
AGAAATACAACCCTCATTTCTGAACACTCAGAAATGAAGCCATGGTTCAGAAATAAAGGCTTGAT
TTCTACACATTCAGAAATAAGAGTTGTATTTCAGAACAGCCCAGAAACAATCCACATCCATGCAG
AAATGCAGAAGAAATAGAGGGTATACCAGAAGAAACACAGAAGAAATGCAAAAGAAACAGAAGAA
ATGCAGAAGAAATGCTAAAGAAACACTGAAGAAACACTGAAGAAA



Found at i:4832 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140267403
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       7976 AATGCCGGAA

                     
       7986 CTAAGCGAG
          1 CTAAGCGAG

                     
       7995 CTAAGCGAG
          1 CTAAGCGAG

                   
       8004 CTAAGCG
          1 CTAAGCG

       8011 GAATGTGTAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.32, C:0.24, G:0.32, T:0.12


Consensus pattern (9 bp):   
CTAAGCGAG

Left flanking sequence: Indices 7486 -- 7985
TTGATAAGAAGACCCAGCAGATGCTAGCCTTTCGGCTCTGTAAGTCCCTATTCGAGGCACAGTAT
TGTCCACTCGCTCGGGACTAGGAGTCCAGCGTGGATAGCGAAGCTTGTGGTCATCGATTGTGCTT
GGTTTTTGCTTTTTCTTGCCTCTGCATTTTGCACAGTAACAATAGATAAGAGGTTGGTTCCTATG
GTGTGACTGGAATACATGCGTAAGAACTAATAAGTTAACTCCACTAAAATACTTGCTAGACGTAC
CGGGTTGGGATCTGGTCCATCAAAGGAACCTATGCTCTCCATCTTAGTCGCTTTTCTTACCAATG
CGTTATTTTTATAAAGCTAGATAAAACTTGACTCCGTGGGTATATGCGACTTAACTCCAAAGAAG
CGCTCCTGGAGCTCGTGAGGAAAGAAAGGTGTAAATTGCTATGTGTTGTATGTTGAACTGCACGC
GTTTATATAGCCCGTGAATAGCGGGATATATGGTGAATGCCGGAA


Right flanking sequence: Indices 8011 -- 8510
GAATGTGTAAGAATGGTTCGAACAGAATCTTGTTCAAACCCCCCCCCCCCCTCAGTGAGTGGCTG
GGCGAAAAGAATCTACGGCTTGAGGCAATCAACCAGATTAATATAGTGTAATGGGGTTAGAAACT
TTGTGGACTACGCTTCGAGGAATATGATTGGTGAATTGGTAGCCACAGCCCGAGCGTAAAAAGCT
TCACACGTTTTGTTCTTTTGTTCTTCTTGAAATTCTACCCAGCCTGGGCGCGAGTTGATTACGTG
TACTTAACACAACCAGAAGAATGTGCGACTCAGCGATCCCGACCATCTCCACTCTCGATGAATGC
GTGTTACTTAAGGCTGGCCGAGGCGGACCTACTGCGCTACTCCGTGCGACCTTATGTGAAGTTTA
AGTCCAACGCGCAGCCAGCCAATCCCCTTAGGAATCGAGAAGAGGCGGAACGCTGGAAGTTTGTT
TTACAACCAAGACACATAACGTTTCTTGCTACTGCAAGTATTCGA


Done.

rsol.ctg.fasta.s5417.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267412

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 6063
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24


Found at i:2492 original size:135 final size:135

*************Found a new SSR********************
 Sequences: ctg1113140267431
    Period size: 9  Copynumber: 3.3  Consensus size: 9

       3312 TGCCTTCAAC

                     
       3322 ATCCTCCAA
          1 ATCCTCCAA

                     
       3331 ATCCTCCAA
          1 ATCCTCCAA

                     
       3340 ATCCTCCAA
          1 ATCCTCCAA

               
       3349 ATC
          1 ATC

       3352 ATCTGATTCC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.33, C:0.43, G:0.00, T:0.23


Consensus pattern (9 bp):   
ATCCTCCAA

Left flanking sequence: Indices 2822 -- 3321
GCTTTGTGGAATTTTTCAGAACGCACAACGAATGCGTATCGATATCTCAGTGATACCTATCATAT
GCATAAAGTTACCACCGTTATCATTTACGTATGGGCACTTGAAGTTAAATAGTAATATATTTCTC
CAGCGACCTTGAAAGTGGAGAGCGCTCAAGCCTCTCACCCAAGGAGCGAGTTTTAGGCAATTATT
TTAGCACACTCCCACCCCCTAAGATTTACTCAAAAATATGCGAAGATCGTCGGGCAGGATGATCG
ATGGAGCGCTCCAATGAGCCAGGGCCAATCAGCGCAGGAGGAAAGTCACTTGACATTCAAAGTCT
AAGTTAGTCAGGGGTCAATTGTATACCGTATGCGTTAGATTCGCCAAATGAATGCGGTGCCTACA
ATCTATTGTAGGCTCCAGAGCTTCAACGAATTATCCACCACTGTTGGCCCTGTTTTTCTCCGCGG
AAGAACAGGCCCACGCACTCTGGCGCCAGACACGATGCCTTCAAC


Right flanking sequence: Indices 3352 -- 3851
ATCTGATTCCTCCGATTCTGACGCGCTTGACCCAGCATCTTCAAAGTGACGAGAGCCCGACACGG
ATACAACGTAAGGTTTCGTAGGATGGAAACTGATGGCCCCCATAGAATCTATGACAACTTGGATT
CGGAAGTTTAAACATGTGATAGATATCATACCTTGATGTGCGCCAACAGTACCCACTCGACCCTC
CTCTCCAAGCGCGTCAAAAACGGAAACCTGCCCTCGCTACAAGCCATCGTCCAAGTCCAAATTGA
GCAGGACTTCTCTACATAAGCGCGCTAAAGAGTCCTTACCTCGTCACCTGCAATGACCCAACGCC
CATCCGGACTCAAATCGAAGCCCATCCTTTGATTCGTCGACGCTAGACCCCGATGGTACAGTATG
TCAGGCTCAGAAGGGTTCCTAAGATCCCATCGGGCAATTAGGGGGGTACGGCGGAAAGCGGCGTA
TACAATATGCGCCTGGGTAGGGTTAAATCGGATCTAGTGGAGGCA


Done.

rsol.ctg.fasta.s5441.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267436

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 4123
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26


Found at i:1079 original size:20 final size:20

*************Found a new SSR********************
 Sequences: ctg1113140267452
    Period size: 9  Copynumber: 3.3  Consensus size: 9

      29566 TGAGTTGAGC

                     
      29576 TCTTTTCTA
          1 TCTTTTCTA

                     
      29585 TCTTTTCTA
          1 TCTTTTCTA

                     
      29594 TCTTTTCTA
          1 TCTTTTCTA

               
      29603 TCT
          1 TCT

      29606 CGTTCCAATA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.10, C:0.23, G:0.00, T:0.67


Consensus pattern (9 bp):   
TCTTTTCTA

Left flanking sequence: Indices 29076 -- 29575
GATAGGGTTTTCCTTGGTAGCAGCCATATTATGAGTTCGAATCTATGTAGTGGTGGACTCGAATA
TAAGAGGGGGCATCCGGTTATTTCTTCTCTATATAAATGGAACAGCAAAAGGTTAGTCATGTTGC
AAGGTGACTCGGCAAGTGTACGTGTACATGGCAACGCGTCCTCCGCGCTTTGTAAGTATGGTTGG
TAAGAATGCTTGGATTAAAGCCCGCAAATGGGCCGGTTCGGATTCCATGCCTGTCACTATATTTC
TCACATAACTTTTCTAGAATTTAGACTGCGGTTGGGAAGTAATCTTGCTGACTTGTAAACTGCCT
GGTGACTTTTGTGTGTTTTTAATAAAATACAGTTTACGTTTTGACCCCTGTACTCAAGATTACAA
CTTGAAGTTAAACCCAAGCCTAGTGTATGCGCAAAATTGAGCACAGGTGTACATATGTGTGTGAG
CGGGATTACATGAATATGTATAAACCTAAATAATTTGAGTTGAGC


Right flanking sequence: Indices 29606 -- 30105
CGTTCCAATACCGCGCCCAGCGCCCTTCCTGTCATTAGGATATGTTCCTCCACCTTGGCACCCCC
TGTCGTATCCAATCGATGGAGCCTCCGATGGCAAATTCAACAAACGAGTCTTTCTTTCCCGACCC
ATCCTTTTGTGATAAGATCCTATAAAAGATGATATGGTTATCTTTAGCTGTTGCCATTGTCAATT
ACGGTCAAAGCACTAGGAACTTAGATACGATTGCTAGCGTTGAATGTCAACCAACTCATGTATAT
TGGATAAATCACGCTGATTCATACTGTGTGATGCAAGGAGATGCAAGGACCGCCCCCGAGTTGGT
GAACCATTGGGGCCGTGTGGTGTTATGGTCTCGAAGGTTGTGCAGGGCGCTTGTTACGTAAGCAT
GGCAGAGCCTTGTGATTGACAAATCGTTTGATAGAGGCCACCACCACATCATGTCAGGACGACAA
GGCGGAAAATTAAAGCCACTAAAGGTAAGTGAATTGATCAAAGAA



Found at i:37258 original size:3 final size:3

*************Found a new SSR********************
 Sequences: ctg1113140267501
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       7331 AGGCGGCGGG

                     
       7341 AGAGGAGAT
          1 AGAGGAGAT

                     
       7350 AGAGGAGAT
          1 AGAGGAGAT

                   
       7359 AGAGGAG
          1 AGAGGAG

       7366 GACGCTCGAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.44, C:0.00, G:0.48, T:0.08


Consensus pattern (9 bp):   
AGAGGAGAT

Left flanking sequence: Indices 6841 -- 7340
GTACTCGCCAAGTGGGAACAATTCTTCCTTCACAAAAAGGATGTGGTCGCTGCTGGGCTCGACAA
GAACCTCGTACCGTATAATAATACCGAACTGATCAACCAAACCGGACCTGGCGCCATGCTGAACG
ATATGCGTGCCAGGGTGAAAGCTGCGCTGGCCAAAACGGACGAAAAGAGCAAGGAACAAGCATAT
ATTGTAAGCGCACATGACCGCAGTCTCGGGTCCCATAATGAATCGCTGGGATTACATAGGCATGG
ATAGGCTATTACAAGAGCAGCTTACGCGACTTGGGGTGGAGAGATGTAGACCTGGTCCAGCGAGC
AAACGATATGGCGCGCGATGTATTCCTATATGCGGGATACCAAGCTTCTGATCAGCCTTCATCGG
AATGGCTCCCACCACCGATCTTGGCCAAGACGATCGGGATGATGGGGCTTCGGGAGGTGCGCAAG
CACGGACTTTTCAACGTCCAAGCCGATGTCGGTCAAGGCGGCGGG


Right flanking sequence: Indices 7366 -- 7701
GACGCTCGAGGAACCAGGGACAGGGGCAGGGACAGGGCCCGGGACGATACCAGGTCGAAGCTAAT
CCTCTTCGCGAGTCAGCTGAATCCCAGGCATCTGCGCTTGAAAATCAACGGGCGTCTGGCTCTTT
CCGGAGAAGAGGCAGAGGCAGGGGCAGGGGTAGAGGTAACTAATCGTCTGGGCTCTTCTTTCCAA
CTCGAGTACGGCCGTTTGATCCCCCTGGTGACCTTGACTGTATTCCCGTGTTGCGCATATAAACC
ATAGGATGAGTATAGATTACACACGTTCCCCAGGATAATCAGACAGAGAAGGGAAGGCCCGGGTG
CCGTAAACCGA


Done.

rsol.ctg.fasta.s5512.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267507

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 8866
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.26


Found at i:7093 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140267508
    Period size: 9  Copynumber: 4.0  Consensus size: 9

       4214 TAGACATATA

                     
       4224 TATAGAGTT
          1 TATAGAGTT

                     
       4233 TATAGAGTT
          1 TATAGAGTT

                     
       4242 TATAGAGTT
          1 TATAGAGTT

              *      
       4251 TAGAGAGTT
          1 TATAGAGTT

       4260 CAGGTAAGAG


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   9   26  1.00

ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42


Consensus pattern (9 bp):   
TATAGAGTT

Left flanking sequence: Indices 3724 -- 4223
CATGTCTTTAGGGCTTGAAGTTCTAAGATAACCTCACCCCAGTGTCCCTAACCATCCCCACCTCC
TGGCCCTTGGTTGGGGGTCCTACTAGGACCACTAGGAGTTTCTTTAGGAGATTATGTCCTAAGTG
CCCCTAGAACCATCCCCACCTCCTGGCCCTTGGTTGGGGGTCCTACTAGGACCACTAGGAGTTTC
TTTAGGAGATTATGTCCTAAGTGCCCCTAGAACCATCCCCACCTCCTGGCCCTTGGTTGGGGGTC
CTACTAGGACCACTAGGAGTTTCTTTAGGAGATTATGTCCTAAGTGCCCCTAGAACCTAACCTAT
CTTATCCATTGTTGTTGCTGTTGTTTGTTGTTTGTTGTTGTTGTTTGCTTACATTTTTTTCCTGT
ATAATGTGGTTTTTTGTTGTTGTTTGTTCTGCGACCACCATGGTGTGCCTTAAAGATGCTTGGCG
CATCCTTATTAAGTCAGCTTACCATAATTTACTTGTAGACATATA


Right flanking sequence: Indices 4260 -- 4759
CAGGTAAGAGCACATTGATATATTGTCTTATGGGTTTTTTATCTGGCTTATTTCATACCTTTGGC
TAAAAAAAAAACTAACTATACCACCAGATACAAAATTACTATACCAAGTCTAGTTTGTCAAATAT
TATCTCATCTTGTAATGATGAGGCATGGCATGGTATCCACACAGCTTGGTGAGCCATGCCTTGGG
TTTGGAATGGCTGTGTGGAGTTTAGTGTGGTTGGTTGGGTTGGTTGTGGTGAGGTGTCTCTGGTT
AGTTAGTGGGTTGGTTGGTTTTTTGTCTTTCTATCACACATCATCTGAGTGGAAGCAAGGAGAGT
GTAGTTTTCCCTATCTTTTGAGTTTAGGTATCAGGAGTTTAATTTCTTTGGCATATACAGTAAAT
TGTTTAGACTATTGTAGTTGCACCCCTTATCCTTTGGCACACAAGACAAAGCAACAATCAAAGAA
AGACAGACAATATCATTTTGATCCATACACAGTATGCACTAGTGC


Done.

rsol.ctg.fasta.s5514.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267509

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 5225
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29


Found at i:1061 original size:30 final size:30

*************Found a new SSR********************
 Sequences: ctg1113140267512
    Period size: 9  Copynumber: 3.7  Consensus size: 9

      23679 ACCCCAGCCC

                     
      23689 CAACCCGCT
          1 CAACCCGCT

                     
      23698 CAACCCGCT
          1 CAACCCGCT

                     
      23707 CAACCCGCT
          1 CAACCCGCT

                  
      23716 CAACCC
          1 CAACCC

      23722 ATCCAACCTA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   24  1.00

ACGTcount: A:0.24, C:0.58, G:0.09, T:0.09


Consensus pattern (9 bp):   
CAACCCGCT

Left flanking sequence: Indices 23189 -- 23688
AGAGGGGTTCGGTCAACTCGAGTGGGACTGTGACTGGACCTGGTGCGACGGCTGGTTCGACTGGA
CCTGGCTCGAACGTCGCGAGTCCCAATACTACATACGGAGACCTCTCGCGCGCGCCCACGGTCCG
AAGCGTCCAACCCGGAGAAATTTTCCATCATCCGGGAGCGACTATGCCCATGTCTGTCCCGCAAG
GTCCGTCGGCCCCGTATCAGGCGGTTGTTCCCCCTCCGCCGTCCAAGTCGCCGCCGACAAAAGTG
GTGGCTCCGGTCAAGGTTGTGGCTCCGGTCAAGGCTGTGTCTCCGGTCCAAGTTGTGTCTCCGGT
GGTTAATGCCGTATCTCCTGCGCCGGTTCAAGCTGTGGCGCCTCAGCCTGTTCCTACGAGACAGG
TGAATGCGTCGGTTCCGCCTAGGCAGGTTACTTCGCCGTCGCAATCGAACCAAGTGATTCCGCAT
CGACAAGTTACTTCTCCGCCTCAACCTCAACCTCAACCCCAGCCC


Right flanking sequence: Indices 23722 -- 24221
ATCCAACCTATCCAACCCCAACCCACCCAAACCACACTTCCAACACCCATAACCTCTCCCACACC
CACATCCCCACCCACCCAATCCACCAAAAAACCCACACCCAGCCTTCCACCAGGCGCAGCACCCG
CCCCCACGTCCACGTACAAACACAGTCCGACCAGCCACGGTCCGGCGTATTCGGCTTATGGGCCT
ACCCCGGGGTCGGCGTATGGGTCGTATGCACCGAATGGGAATGTGAATGCCGAGAGGGGGGTGGA
GAGGGGGGGCGAGAGGGGGAATGTTGAGAGAGTGAATGGGTCGGGTGAAGGCGCGAGGACTCGAA
AAGTGTCGCAGGAACCTAGGAGCCAGAATTCAGACTTGCGCGCGAGGCAGAATTCGGACGCGAGG
GCGAGACAGAACTCGGACGCGAGAGCGAGCCAAGTCTCGGATGCCAAGGCCGCAACCCAGCTTTC
GACGAGCCAGACGTCCGATTTGAGAAAGAGTCAAGTGTCGGATGT



Found at i:23983 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140267594
    Period size: 9  Copynumber: 3.3  Consensus size: 9

       1772 ACCCTGCAAT

                     
       1782 CTCCACACC
          1 CTCCACACC

                     
       1791 CTCCACACC
          1 CTCCACACC

                     
       1800 CTCCACACC
          1 CTCCACACC

               
       1809 CTC
          1 CTC

       1812 TACCCTCCCA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.20, C:0.67, G:0.00, T:0.13


Consensus pattern (9 bp):   
CTCCACACC

Left flanking sequence: Indices 1282 -- 1781
CATGGGTCTTATGAAAAATCATTCGTTATCTGAGAATTCACTCAAGGTGATCTGCAACACGACCG
GGGTCGTATAGACAATTCTACATAGCAATTCTCCCCTGTTGGAGACTGCGTAATTATGGGGCTGA
ACCAATGATACGAGGCCAGAAGGAAACCGCTACTACCAGTAGGAAGTAGTGCTTGTCTTGACGCT
CTTGATGCTCTTGACGCGAGGGGTTGTAAACGTATAGTGAAATATAGTTTTGATGGCACTGTGGG
GGATGAATTCGACTATGAGGTGCGACAGAACACGTTGGGAGCCCAAAGCTAACCTGACCAATGTA
TTTGGACCATCAATAGGTTACGAGAAGTCGGGTGGGTCGTGCGAGTCAACAAACTTAGAGTTGAT
TGTTCCCGATCCTCCCTCGTATCTCGCTTGGTGAAAGGTTGTCTTTAACTCGCGCGCGTAAAGTG
CGTTTTCTTATGCATCTCCCGATTCGATGTGTGAAACCCTGCAAT


Right flanking sequence: Indices 1812 -- 2311
TACCCTCCCACCGAGCGTACCCTGAGTAAACCCGTAAGAAGTATGTTTGGTGCTGAGATCTTTCA
GCTTTTAGCGTGTAATCGTTGGACTGACGTCTGTGGCACAATCGCCTCGTTAATTGTACCATCTC
GGTTGATGGTTCGGCCGCTTCGAGAAGGAAAGAACCAGCATCTTGTAATACTGGCGTTTAAATAT
GACGTTACCATGATGATGTAATCTTTGTTTTACCTCACATTCTCAAACTCGGTCCCTCACAACGC
ACTACATATTGCTTTGCGCTAAGGCATAGCTAAATTCATCTTGCCCACGAACTAGGCCCTTGTTG
CCTTTAACAGCTCTATTGCTGAATGTTCCCATTGTATGCTTCCAATCTCACCAACTCACTAACTC
AACCAAATTAACTTTTGCTCTGGATTTCTCCAGAGTTCTCTGCCCGAGGACTTAACTCCACGGTG
CTCCAGTCGCCCCTGGAGAAGTATTTCAAATTATCTCCAGAGCTC


Done.

rsol.ctg.fasta.s5600.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267595

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 14502
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27


Found at i:5901 original size:16 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140267612
    Period size: 9  Copynumber: 7.4  Consensus size: 9

       6035 GGATAGGTCC

                *    
       6045 AATGTCTGG
          1 AATGACTGG

                  *  
       6054 AATGACAGG
          1 AATGACTGG

            *         
       6063 GATGAAC-GG
          1 AATG-ACTGG

                  *  
       6072 AATGACAGG
          1 AATGACTGG

            *         
       6081 GATGAAC-GG
          1 AATG-ACTGG

                     
       6090 AATGACTGG
          1 AATGACTGG

                     
       6099 AATGACTGG
          1 AATGACTGG

                
       6108 AATG
          1 AATG

       6112 TCTGAGATGT


Statistics
Matches: 48,  Mismatches: 6, Indels: 8
        0.77            0.10        0.13

Matches are distributed among these distances:
   8    4  0.08
   9   40  0.83
  10    4  0.08

ACGTcount: A:0.36, C:0.10, G:0.36, T:0.18


Consensus pattern (9 bp):   
AATGACTGG

Left flanking sequence: Indices 5545 -- 6044
GTGGGTATGCATGGGGGCGGTCACCCTGTATATATTCCCGGTGAACGCGATATTCCGTCTCGGTC
GCAGTTTGCTTCCACGGATCGTGACATCCCCTCTCGGTCGCAGTTTGCTTCCCCAGAACGCGACA
TTCCTTCTCGATCACACTATGCCCCAGAGCGCGACATTCCTTCTCGATCGAATTACGCCCCTCCA
GAGCGTAATATACCGTCTAGATCTCAGTATACATCTTCAGAGCGTGACATACCTTCTCGCTCCCA
TTATGCACCTCCAGAGCGCGACATACCATCACGATCGCACTACGCCCCTCCAGAGCGCGACATAC
CTTCTCGCTCCCATTATGCACCTCCGCGCGACATGCCTTCTCAATCGCAATACACTGGTACCGAC
CGGTCTCCTTCGCCAGAGGAGTATCATCCGCCTCCTCCTGCTGTACCTATGAATGGTATGACAGG
CATGACCAGTATGGCAGGGGTTGGTTCTATGTCTGGGATAGGTCC


Right flanking sequence: Indices 6112 -- 6611
TCTGAGATGTCTGGCCTTACGACTCTGGTACCTGGCCCCGGAGTAGGACCTGGTGCCGGACCTGG
TGCTGGACCTGGGTCAGGACCTGGGTCAGGACCCATGGCAGGACCTTCAGGCCTTTACATGCCTC
CGCCCCCGCAGGAAATGAAGGCTTCTCGCAAGTCAGCTCGTCGCGCCAAATCCAACATCCCCCCT
CCCCAACCCATCTTTCCTCCAGTTCCCCCTACTGCACCCGAAGCCCCTATTCATCCTATTCCCTA
CAACAACTCGGGGCCATCTTGGCACCACAAACCCGGACCTATCCTCCCTGAAGGTTGGATTCCTG
ATGCAGACGATGAAGGTCATATCGATATCCCTCCTGCGCACGAAATCCATCCTTCCCCGCTGCTT
GTGAATAATGACTTGGGCGAACGTTCCCAGCATCCAGTTATACCTAATGCGCCCCTCCCCAAGAC
GCCCAAACACCGTGCCGGATCGCAACCTACTGCTTCTTATACCCC



Found at i:6174 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140267630
    Period size: 9  Copynumber: 3.4  Consensus size: 9

       5149 CCGTGTCCAA

                     
       5159 CATGACCAC
          1 CATGACCAC

                     
       5168 CATGACCAC
          1 CATGACCAC

                     
       5177 CATGACCAC
          1 CATGACCAC

                
       5186 CATG
          1 CATG

       5190 TCCTCCTGGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   22  1.00

ACGTcount: A:0.32, C:0.42, G:0.13, T:0.13


Consensus pattern (9 bp):   
CATGACCAC

Left flanking sequence: Indices 4659 -- 5158
CAAAACAACATGGACGAGAAACACTAAACAAGAGCAACGCGATAAAAAATGGACGACAATATGGA
CCGGGACCAGAAAATAGCGACATGGTGCATAGATTGAATGGAAAAAATGGGGGGGTCAGCAATAG
CAAGAGAGAAAAGAATAGCGGAAAATGCGTGTCTATTAACCGAGATTTGTTTTGGCCTTTTTCCG
AGTCAAGACGGGCGATGATTTGTTGGCTCGACTGCCATGGCCCACGTTGGGAGCGCCTCGTAGTG
GCTGTGAACCCGATGCGCCGGTGTGATCAGGACCTTGTTCGGGCTGCTGTTTGCGCTTTACCCCA
ATCTGTCCGTTGGGCTGTTGACCGGGTGGCCCAGGATGCGTAAGCAACGGGGATTGGGACATGAT
CATCCCCGGTGACATTCCAGCAGGCATCGCGACTCCTAAACCCGGAAGAGGAGGTAGTTCTCCAC
TTCCAGCAAGAGGTATGCCTCCTCGCATGGGTCCACCGTGTCCAA


Right flanking sequence: Indices 5190 -- 5689
TCCTCCTGGGCCTCCGCCCGGTCGCATGGGCGGGGGCGTCGGCGTTGGTCGGCCGGTGGTTGGGA
TCGCACCTTGAGGCGGGCCATTCATACCCATCTGAGCGTGGGCTAGTGCCGGACTATGATCGGGC
ATATGATGATTCGAAAACGCAGGGTTGAAGTGAGGGAACGAGTGCCCGCCCATTCCTTCTGGCAT
ATGATCAAACCCAACGTCTTGTCGTGCGCGTTGGTCCATGTCAGCATATTGATCGAGAGCCGCTA
AGTCGACACCATCAGAACCAGCCTCGGTTACATGAAACTCGAGCCACATACCAAGCGGTCCCATC
TGGAACGAATGGTCAATTTCCATGACCGGAACTAGTTCATGCACACATGCTGACATCTATCGTCT
ACGCGTGAGTCACGAACAAACCAACCCGGATAACAACACCGCACTCACCGCTAGTAACCTCCACA
CGGCAGATGGCAGACCGTACGTCTGGAATGGCTTTGGGGGAAGCG



Found at i:9160 original size:3 final size:3

*************Found a new SSR********************
 Sequences: ctg1113140267630
    Period size: 9  Copynumber: 11.3  Consensus size: 9

       9142 TTTGTGCAGC

                  *  
       9152 TTGTTGTTG
          1 TTGTTGCTG

                     
       9161 TTGTTGCTG
          1 TTGTTGCTG

            *     *  
       9170 ATGTTGTTG
          1 TTGTTGCTG

               *     
       9179 TTGCTGCTG
          1 TTGTTGCTG

                     
       9188 TTGTTGCTG
          1 TTGTTGCTG

                     
       9197 TTGTTGCTG
          1 TTGTTGCTG

               *     
       9206 TTGCTGCTG
          1 TTGTTGCTG

            *  *  *  
       9215 CTGCTGATG
          1 TTGTTGCTG

                  *  
       9224 TTGTTGTTG
          1 TTGTTGCTG

                     
       9233 TTGTTGCTG
          1 TTGTTGCTG

            *  *     
       9242 CTGCTGCTG
          1 TTGTTGCTG

               
       9251 TTG
          1 TTG

       9254 CGGATGTTGT


Statistics
Matches: 76,  Mismatches: 17, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
   9   76  1.00

ACGTcount: A:0.02, C:0.13, G:0.33, T:0.52


Consensus pattern (9 bp):   
TTGTTGCTG

Left flanking sequence: Indices 8652 -- 9151
CGGGCTGCTGCTGCCCAAACGGCACCATCCGGTTCGCGCCGGCCTGCGACTGCATTGCAGTTTTA
CCTCCTGGGTGGAACAGCTGCTCGTGCTAATGTAATGTAATGTGAAATAGCCCGTGAAAATAATA
TGGAGGTGATGTGGTTGTTTGTTGTGTGGGAGAAGGTGGTGGTGGTGGTGGAAGCCAGCGGAAGA
GAATTGCGGTGATGACAAGCCGAGGAAAACAGACGCCAGGAACGTTCGTCCGAGATACACGCCGG
TTCCGAGTAATCAGCCAGTTACGAGGCCAACAGAGAGGCGGGTAGAGTCAAGTCCAGGTGTGCAG
CAGATTAAGAATGCAGTCAGCGCTGATCAAATGACAACGAAGCGAACCCATGCCTCTGCACTCCG
ATTAACATGGAAATGCACATGACGCCCGACCGGCATCACCAGGCCATGAAATGAACACGCAACGA
GGCTCTTACCTGCTGTTGTGACGGTCCGAATCCCGTTTGTGCAGC


Right flanking sequence: Indices 9254 -- 9753
CGGATGTTGTTGGTACAGTTCGTTCATGTATTGAGACTGGATCTCGCCAGCCCCGTGCTGAGAAT
TAATCGGGGAATAGTCCATATACAAGCGAAATAGGAGAAGGGGGAGGGGCGGCGGGTCGGTCGGG
AAAGAGGAAAGTAATGGAAAATATCAGACAGAGCCGCTAAGAGTGTATATGGTCGCAAGCTAAGC
GCACGCCTAACACACTCGCTACACAAAAACAGACACTGACAATTCGAGGCCCAGCTTTCAGGGTT
CCGTGCTTGCACATATCGGGCCCACCCTCCCCCCACTCCCCCACATCACGCGCCCCCTCGCAGCG
CATATTCCTCCGTTCCGCCACCGTTGACACGAAAACTCTACTCTGACACCCCTTCTCATGATTGG
TTCTTTGGGCCTCTTTTGATCAGCTTCTGTGCACGCTATTCCCACCCTCTGCCCTCTTTGCCTCC
TGCAGGGCGATACGAGCTCACTCTTTGCTCTCCATTCGTTTCGTC



Found at i:15337 original size:16 final size:16

*************Found a new SSR********************
 Sequences: ctg1113140267631
    Period size: 9  Copynumber: 3.1  Consensus size: 9

      12734 GAGGTGGTTC

                     
      12744 TTGTTGCTG
          1 TTGTTGCTG

                     
      12753 TTGTTGCTG
          1 TTGTTGCTG

                     
      12762 TTGTTGCTG
          1 TTGTTGCTG

             
      12771 T
          1 T

      12772 GGTGGTTGTG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.00, C:0.11, G:0.32, T:0.57


Consensus pattern (9 bp):   
TTGTTGCTG

Left flanking sequence: Indices 12244 -- 12743
CGAGTTGACCTTGGGTCTGTTTCGAGCTGGATTTGTTCCCTGCGTCGAGTGTGGCGAGTGATCGG
GCCGCGTCTCGCATCTTGGTTTCGAGCGCGAGTTTTTTAGTCGAAGAGATAAACCGGGATTGTAA
TAGCGCATCTTCCTGTACGAGTATTATTATTAGCTAATAAATAAATAAATTCCATACACACCTTT
TTAAGCTCTTCGACTTGCTCGGCGTTCAAGATCTCCGAGGTCCGACTGTCCATGACGGCCTCGCT
CGCCAACAGACTCATGAGCAAGTCATCTTTGGATTGGTGTGTCGACTTGGTCTTGGATTTGTATT
TCGTGTTGACCATGGGCCGTGTCGGGGGAGAGACGACGGCCGAGCTTTTACTCGATGAACGAGGG
GGTCGTTGGCGCACTGTGCTGTCATCTACGGGCGTCGGTGTTGTCGGACTGCGTATCCCATTCGA
GACTGGTTTGTTGCCAATCGAGAGTGGAGTAATCCGAGGTGGTTC


Right flanking sequence: Indices 12772 -- 13271
GGTGGTTGTGGTTGTGGTATAGTTTGCTGGGGTACAGGTTCAGGTGGCGAAGGCACGATGGGCGA
CATCGGCTCCTTTTCCTTGGACTCTTTCGGACCTCCCAGTCCAAGCCGTCTCGCAAATCCGTTCA
TAGAGGCCGATTACCAAGAAAACTAGAAAGAAAAAAAACGAAGGAGCGAAAAAAAGTGAAGAGAG
GATATAATACACGTCTAGGTATCCAAGGTTGAGGTTTGTTATTGGCCATGGCCGCGGCCCCTTTT
GAGTTTAGCGCCGACTGGTTTGGGAAAGCTTCTTTGGTGCATGTGCCAAGTCATTTTTACTTGTT
TAATAGATTGTATTCATGCGTCAAGTTCTCTATCTGGTATTTGGAAACACTTGTCGCACATTACA
ATTTATCCTTGCATTTTTTATGTACTCGGATACCAATCGGTCTCCTCGATCTCCTTTCAGCTCGG
TCAAGTGCGCCGGGGTCGAGTTTTCCAGAATTCGCGGAACACCTG


Done.

rsol.ctg.fasta.s5638.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267633

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 66965
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24


Found at i:61559 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140267646
    Period size: 9  Copynumber: 6.2  Consensus size: 9

       4511 TAATAACCGA

                     
       4521 GAAGACAAG
          1 GAAGACAAG

                     
       4530 GAAGACAAG
          1 GAAGACAAG

                     
       4539 GAAGACAAG
          1 GAAGACAAG

                     
       4548 GAAGACAAG
          1 GAAGACAAG

                     
       4557 GAAGACAAG
          1 GAAGACAAG

                  *  
       4566 GAAGACGAG
          1 GAAGACAAG

              
       4575 GA
          1 GA

       4577 CGAGGAGGAC


Statistics
Matches: 46,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   9   46  1.00

ACGTcount: A:0.54, C:0.11, G:0.36, T:0.00


Consensus pattern (9 bp):   
GAAGACAAG

Left flanking sequence: Indices 4021 -- 4520
CTGCTTGCTCATCTACTTATTTTTCTTGCACAGGTTATCGACCGGCTCGCGTGCGAGTCATTTTT
CAATTGCCTGAGCAGATTCAACACGTGTACCCAGGTCATCTTGTGTTCGTCGAGTTATTCAACTA
CTGTAGCGCTGGCCCGGTAGAGCCGACAGGACTATTTACAACGAACCACAGCAACCGTGAGGGAA
GACGGGTGACCGCTATTATCCCCCTTTCGTCGGTACGCATGACCTGCCACCTTGCACCCAAGTAC
ACTGCTGCCGAGCAAAATGACTATCAATCCCTCCGATCCGACACTCTTTCCACGTACTCGAAATT
TTTTATCAACATCTATTCGTCGTATTTTATGTACAAGCTTGTGCGGCATTGGGGTCAAGACGGGA
TGTGGAGGTGGGATCCTGACGAGGATGAGGAACAGGTCAGGGACGATGTTGGGGTACTGCAGGCC
GATGTCGAGGTTGAAGACAAAGGTGACGCCAATGCTAATAACCGA


Right flanking sequence: Indices 4577 -- 5076
CGAGGAGGACGAGGAGGACGAGGAGGACGGGTGGGGCCAGGGCGGAGATGAAGACGAGGAGGAGG
AGGAGGAGGAGGAGGATGGCGCCACTTATGTGCCTCCACGTGCGCCCATGCATGCCCAAAGTATC
CGACTGCCTCGTGGACGGGCCCCAGGAAGGCACGCTCGACCCGCACAAGGCCAAGCAGCCGACAG
AAACCGTGGTCGTGGTCGCGGTCGCGGTCGTGGCCGGGCAAATGCCGGCAGATCAGCAGCCCCTT
GCGGTCGTCGAGCACGGGCCAGGCGTGCTTAGATTTTCATGGGTCTTTTTTTGTCCATCAGTAAG
TCCTTACCTCTCTGAAACCAAGTCCCCCAGTGTAAGAGTGGATATGGGTCTCTGGCACAACTTGG
CACTCCTGCCGGCTCAATGTTGTAGCCGGTTGTGTACATCTTTCCCTGGCCCCGATATCGAGGTG
TTTCTGGGAGGATTACCGTGGAAACAGCCAGTTGTGGCCAGTAAC



Found at i:4596 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140267646
    Period size: 9  Copynumber: 3.8  Consensus size: 9

       4562 CAAGGAAGAC

                     
       4572 GAGGACGAG
          1 GAGGACGAG

                     
       4581 GAGGACGAG
          1 GAGGACGAG

                     
       4590 GAGGACGAG
          1 GAGGACGAG

                   
       4599 GAGGACG
          1 GAGGACG

       4606 GGTGGGGCCA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   25  1.00

ACGTcount: A:0.32, C:0.12, G:0.56, T:0.00


Consensus pattern (9 bp):   
GAGGACGAG

Left flanking sequence: Indices 4072 -- 4571
TGCGAGTCATTTTTCAATTGCCTGAGCAGATTCAACACGTGTACCCAGGTCATCTTGTGTTCGTC
GAGTTATTCAACTACTGTAGCGCTGGCCCGGTAGAGCCGACAGGACTATTTACAACGAACCACAG
CAACCGTGAGGGAAGACGGGTGACCGCTATTATCCCCCTTTCGTCGGTACGCATGACCTGCCACC
TTGCACCCAAGTACACTGCTGCCGAGCAAAATGACTATCAATCCCTCCGATCCGACACTCTTTCC
ACGTACTCGAAATTTTTTATCAACATCTATTCGTCGTATTTTATGTACAAGCTTGTGCGGCATTG
GGGTCAAGACGGGATGTGGAGGTGGGATCCTGACGAGGATGAGGAACAGGTCAGGGACGATGTTG
GGGTACTGCAGGCCGATGTCGAGGTTGAAGACAAAGGTGACGCCAATGCTAATAACCGAGAAGAC
AAGGAAGACAAGGAAGACAAGGAAGACAAGGAAGACAAGGAAGAC


Right flanking sequence: Indices 4606 -- 5105
GGTGGGGCCAGGGCGGAGATGAAGACGAGGAGGAGGAGGAGGAGGAGGAGGATGGCGCCACTTAT
GTGCCTCCACGTGCGCCCATGCATGCCCAAAGTATCCGACTGCCTCGTGGACGGGCCCCAGGAAG
GCACGCTCGACCCGCACAAGGCCAAGCAGCCGACAGAAACCGTGGTCGTGGTCGCGGTCGCGGTC
GTGGCCGGGCAAATGCCGGCAGATCAGCAGCCCCTTGCGGTCGTCGAGCACGGGCCAGGCGTGCT
TAGATTTTCATGGGTCTTTTTTTGTCCATCAGTAAGTCCTTACCTCTCTGAAACCAAGTCCCCCA
GTGTAAGAGTGGATATGGGTCTCTGGCACAACTTGGCACTCCTGCCGGCTCAATGTTGTAGCCGG
TTGTGTACATCTTTCCCTGGCCCCGATATCGAGGTGTTTCTGGGAGGATTACCGTGGAAACAGCC
AGTTGTGGCCAGTAACCTATTCACTCTACTGAGGGGGCGGGCCTT



Found at i:4640 original size:3 final size:3

*************Found a new SSR********************
 Sequences: ctg1113140267663
    Period size: 9  Copynumber: 3.3  Consensus size: 9

       6979 GTGGATGTGC

                     
       6989 AAGAGGAGG
          1 AAGAGGAGG

                     
       6998 AAGAGGAGG
          1 AAGAGGAGG

             *       
       7007 AGGAGGAGG
          1 AAGAGGAGG

               
       7016 AAG
          1 AAG

       7019 CTGGGAGCGA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00


Consensus pattern (9 bp):   
AAGAGGAGG

Left flanking sequence: Indices 6489 -- 6988
TGCGTTCCTCCTTTCATTAATACTTTGAATTTGTATTTGACCTTTGATACCTCAGGTCACAGAAA
GTGATTTGCATGAACTTTTTGCTCCTTATGGACCTATATTCTCCGTCACTCTTCCAACCTCCCAA
TCCGACGAATCCGAGTCTAAACCTGGGCGTCGCCGAGGGTTTGCCTTTGTCTGGATGTTATCGCA
TGCCGATGCCGAACGTGCGCTGAAGGGCGTCAATGGACAAACTGTGGGTGCGCAAAAGAAGAGGA
AGAAGAAGACAAAGCGAGAACGAGAGGAGGCAGCTCGGGCCAAGGCCGCCGCAAGGTTACGGGAG
TTGAAGGGGGAGGAACCGGAGGTGAACGAAATCAGTGAAGAGGAACAGGAAGGCGAGCAGAATGA
GCCCTCAAAGGAGGGTCGCGTGGTTGCGGTTGATTGGGCTTTGAGTAAGAGTAAATGGGAGGAGG
CCATCACGCAGCGGCAGGACGAGGAGGCTATGGAAGTGGATGTGC


Right flanking sequence: Indices 7019 -- 7518
CTGGGAGCGAGGTTGGTTCCTCAGAAGAGGAGGCTTCAGATGAGGAGAAAGACGAAGAGAGCGAG
GAGGATGCCCACGAGCGACCAAAACTCCCGGATACCGATGTCGGGACTACGCTCTTCGTCAGGAA
CGTACCTTTTGAGGCGACTGAGGATGACTTGCGAACGTTGTGAGTGGATCTATCCTATCAGCCAG
CACTCACTTAATCGGTGAACCTCCAAGGTTCCGTGCATTCGGTCCTCTGCGGTATGCTCGCATTA
CTATGGACCATGAGACCGGGCGGTCAAGAGGCACTGGGTTCATATGTTTCTGGAAAAAGGAAGAC
GCAGATGCAGCAATCGAGGAGGCTGAGGCGATGGCCAAGGAGCTGGGGACAGACCAACCTGCTGT
AAGAAGAAACGCTTGCCTGATAATTGTCGACTCAAATTTTCAATCTCTCAGGCTGGAAGCTCAAA
AGTTCACAACCCATTCAGCATGTCACTCCTTACCCCTGATCCGTC


Done.

rsol.ctg.fasta.s5669.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267664

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 40817
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25


Found at i:3531 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140267695
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       6529 GCGTGGGCTA

                     
       6539 GCACACGAG
          1 GCACACGAG

                     
       6548 GCACACGAG
          1 GCACACGAG

                    
       6557 GCACACGA
          1 GCACACGA

       6565 TGCTCGGCAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.35, C:0.35, G:0.31, T:0.00


Consensus pattern (9 bp):   
GCACACGAG

Left flanking sequence: Indices 6039 -- 6538
GTTGTCGCGTCGGGGTTGGCTACTGGGCTGGTCCCTCCTCCTCCAAATTTCCTAGCCCGCTCAAA
CACGGAAACGGACGTCAATGAAAAGGGGTGAGACAATTGTGCATTTAAGCCGAGCCTGTTGACTA
AAGGTTGTTTATAGGGAGTTTAGTGGCCAAGATATCAGTATTCAGGAGGTTCCCAAGTAGTAGAG
GCCAAGGTCTAGTGTGCGTGTATGCGGGGAAATAAGGATGATTGGGGTAATTTTTGTCTGTTTGA
ATTGGTTGGGTGGTCATGTATCTATGCGGTTGGTCATGTATCGTATTATCCGATTATAAGGAAGT
TTATTGAGTGACGGCATTGAGTATTTTTACTGGCTGCAGAACATTTACTAAGCCCCCCTTTCCTT
TGTCGGATTACTGTTTTCATCGGCTCACATGAAAACACTCGTGTGTGTTAGATTCGACTGTGAAT
GAGCAAGGGCGTTGTTCTCTGACTGCATGCGGGACGCGTGGGCTA


Right flanking sequence: Indices 6565 -- 7064
TGCTCGGCACAAAACTGAATAGAATGTATTGAATAGCAAAATAAATATTGCGGTCCGTAGACCGT
CCACTCTGAACTAGCGTGTCATCCTTGTGCAGGGGCCATGCTAATCTTCTCTGTATCGTTCCAAT
TTTTGTATATGTCACTCCGAAGAGGACAAGTCGTAGTGAGACTTGTAGAGTATGCCCAGTGTCAG
AACTTGCTGATTCCGGGTTTGTGGGTTGGGATATTGGGTTGTAACGGCTGAAACCGATCAATTTG
ATAGAGTTTGTTTGGCCGTGCTTGGGTGTAACGGGTCGGAATTGATGGGAGTCTGTTGCTCTGTT
CCTCTGTGTTATCCCCCCTGTAATACTCATTTCTCCTCGTAATGGCATCGCCGCCACGAGCGATG
ACTTCGTACCCCCTCCTCTCGATACTACTGGGGGCAGCTCTCGCCGGCGCCCAGAATGCACCACA
AATTGATTTTTCTCGCATGGGCACCGTCGGCATTGCAGGCGCGTT


Done.

rsol.ctg.fasta.s5702.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267697

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 67304
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25


Found at i:5347 original size:21 final size:21

*************Found a new SSR********************
 Sequences: ctg1113140267697
    Period size: 9  Copynumber: 3.0  Consensus size: 9

      29681 ATTGGTCTAA

                     
      29691 CCTAGAGGG
          1 CCTAGAGGG

                     
      29700 CCTAGAGGG
          1 CCTAGAGGG

                     
      29709 CCTAGAGGG
          1 CCTAGAGGG

      29718 TTCTATCAGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.22, C:0.22, G:0.44, T:0.11


Consensus pattern (9 bp):   
CCTAGAGGG

Left flanking sequence: Indices 29191 -- 29690
CAGATTCAGGGATGTACTGATGTACGTACCAGTACTTATTCCAAATCCAGGAATCTCGGAATATG
GTATTAATATCGGGTTGCGGATCTTTGAAGCAAGTCCACCCAAGCCAGATCCACATACTATGCCG
ATTCTTGGTTCTCGTAATTCAGCTGGAATACGCGAGTGGATCTCCCTAATCGCATCAGCGAATGC
ACTCGGGGTGTTTACAACACGAGCCATCTTGATGTTGATAATCTAGTCGGGAGGATAAAGAGAAA
TTGGCCGGTTCCGTGTGGCCATTAGTGCACGTGATGGGCGGATTGGCGCTTAAGTTAAATCATCC
ACAATCCACTTCACCAAATGCACGGAATGAGTGAACAAACACGATGATGAATTATAATTATGAGA
GTATCGAAAATTGCGTAGTGGTTTTCATCGCTTCCAAAAAAATTAATTACACGATTAAAAACAAT
CCTGGATTCGGAGGGGATGGCAACACTCATATATTATTGGTCTAA


Right flanking sequence: Indices 29718 -- 30217
TTCTATCAGTGCATAATTCGTCCATTTACAGAATCATTGTTGAGGAAGTGTTCAGTTGGCTGTTC
TTAGATTTTTTATTGTTCTCCTCAAGGCAAGGCTCGGAGTTTGGTGATAAAGGTCTCATCCGGAG
TTGATGAAAGTGGGAAAAGGATGGGGAGCTAATCGAATAAGTGCTTACCTCTTCATTGATAAAGA
TTGAAGTATGCCCTAACTTCTGGATTAGCCTGGAGCATAGAAGGTTAGCGTCTGTGTGGAATGGT
GAGGGATGAATGTAAGGATTCAGAAATGCAATGTGTTTGGCTTATGCAGTGTCTATCGGCAATTG
CTGTTGCAATACGTTTGGGGCGACACAAAGGATTCATCCGAAAGGTATGTAAATGGAATGGAGCC
TACTTACCAGGGTTGACGTTCGTCCTAAATTGAGCGCTCACAAAATTTATGTCCACTTCCTGCTA
ATCACGTGCCAGGGTCGAATGCTTACGCAAGTGCTCAGTAGCGCT



Found at i:59819 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140267697
    Period size: 9  Copynumber: 4.4  Consensus size: 9

      59795 CTGACCCCCA

                     
      59805 TCCACTTCC
          1 TCCACTTCC

                     
      59814 TCCACTTCC
          1 TCCACTTCC

                     
      59823 TCCACTTCC
          1 TCCACTTCC

                     
      59832 TCCACTTCC
          1 TCCACTTCC

                
      59841 TCCA
          1 TCCA

      59845 GCATTGGCAT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   31  1.00

ACGTcount: A:0.12, C:0.55, G:0.00, T:0.33


Consensus pattern (9 bp):   
TCCACTTCC

Left flanking sequence: Indices 59305 -- 59804
ATCGGGCATCGAGGACGTCGTTTGGCCAAACCGATGTTGACGTGCAAACGATGATGGATAACCTA
AGCCTGCTGACACAGGGCAAAATAAAGCAACCCAATGCCCCTCGGGTCGCACGCAGAGAGAGAGG
TAGGAGGGGATAGTCAGTCAAGAAAAACTCTAGTGTGGCATAAAGGATCGTCGTGTGCGATAGGC
GTTGCCGAGCCTCGGATGCATCACGCCCAAACAACCCGAAGCATGCGGGCCTGGCGTATGTTATT
TCCCCTGAACATCTTTATGGAAATCTCCCGGGAAGTGCCTCGGCATCTGCATCGCAAGTGACACA
TGTCGGATACACTAGAGATGGTTAATGCCAACTGTGAAACCATGGACAAGACAAACATAATAAAA
GCCGTGACTACGACACAACCAAGTGATATTTTGAGATCTTGCTAACCAGATAGATACTGAAACTG
CTACGTGCTCCAACCACCACCCCTGTTCGGCGACGCTGACCCCCA


Right flanking sequence: Indices 59845 -- 60344
GCATTGGCATTAGGAGAGCTGCCCCACCCTGATGATGCTCCCCCACCCGACCATGCTCCACCGCG
AGGACTGGTCGAACCCCACCCGCCATTGTTAGCTGGGCTCGCAGCACCCCATCCACCGCTAGTTT
GCGCAGGAGATGCGGCTGCGCCCCATCCACCCTGTTGATTTCGCTGCGCGCCGTTGGCTTGAGGA
GTGGGAACACCCACCACTGTTGTATCCCCATCAAACTCGTTTCGGGGGGTCAACCCATGAATAAT
ATTTCCCAACTTGGTTTGCAATTCGCTCAATCCCTGCGCAGAACTTTCAATAACCTGGTCGAGAT
GAAGAAAAGAAGACGTACTTTGAGAATAACCTCCCTAGGCGCAACCTTTCCATCCATCTCAAAAT
CGAAATAAAACTTTTCGGGCTTGGCCATATAGTCAAACTGCTCGTCGTCCCTTGGAGGTTCCTCC
TCTTTTGCGTTTTCACTGAGCGGCCATTCCGTGCGCGAGTCGACT



Found at i:66633 original size:3 final size:3

*************Found a new SSR********************
 Sequences: ctg1113140267716
    Period size: 9  Copynumber: 5.4  Consensus size: 9

      10024 GGAAGAAGAT

                    *
      10034 GAGGAGGAG
          1 GAGGAGGAA

              *      
      10043 GAAGAGGAA
          1 GAGGAGGAA

                     
      10052 GAGGAGGAA
          1 GAGGAGGAA

                     *
      10061 GA-GAGCGAG
          1 GAGGAG-GAA

                     
      10070 GAGGAGGAA
          1 GAGGAGGAA

                
      10079 GAGG
          1 GAGG

      10083 CCGAATTTGC


Statistics
Matches: 33,  Mismatches: 5, Indels: 4
        0.79            0.12        0.10

Matches are distributed among these distances:
   8    3  0.09
   9   27  0.82
  10    3  0.09

ACGTcount: A:0.41, C:0.02, G:0.57, T:0.00


Consensus pattern (9 bp):   
GAGGAGGAA

Left flanking sequence: Indices 9534 -- 10033
GTTCAGGCGTCATGGTTGCAAAGTCGCTACCTCCCGAGTTGTCCCACGTTGTGAAACTGGTGGAT
TCTAAACCCGAAGCGCTTGCCCGGGGCGATATGGGGATGCATGCTGCGGCGTTGGCGGCTGCCCA
GTTAATATACAAAATATGTAAGATTTTGTTGCTCCCTTGTTCTCTCCCTCATATTGGTGGCTAAT
ACGATTAATCAAAAGCACTGGAGACGGAGAAATCTGCTGCCACTCCGATATCCAAGCTCCTCGCC
GGCCTGTCGCCCGAATCACCGGCGCCTACGACTCGCTCTCAAAAACGAAAACGAGACGAGCTTCC
CAAAGGACCTCCTCTTGCGTTTAAACCTACTCCGAAAATTGGAAGGGATGTAGATGGCCTTGGGA
TGAATGCCAGCAAACTATGGGCGATGATGGAACACCGGACTGGTCCTCTTTGCGGGATATTAGAG
GCTGTTGTTGCGCCAGAGGTTATCATCGAGGAAGAGGAAGAAGAT


Right flanking sequence: Indices 10083 -- 10582
CCGAATTTGCGTTGGACGAGGAGGAAGAAGATATATCCGACGAGGACGATGAAGACGATGAGGAA
TACGAGAGCGACGACGATGGAGACTCGTACCTCGGAGATACAACTATGGAGCTCAGTCGCACAGA
AGACCACCCGGTCTCAGACTCCGACGACGCCGAAGAAGCATCAGACGACGAGGAAATTAACCATG
CTTATCTACACAACCTTGATCTCGACCGAGCACAGAACCCTCAAAAGGAATCCAAGCGACGGTAC
GCACAATCTGTCTCATACGTGACACAAATTAAACGCTTGATTCACACAGAGCACACCCGACATTG
GACGACACATTCTTCTCCATCGACGACTTTAATCGAGAGACCGAGGCCCTTGAGGCCCAGAACCG
GTCTTCTGGCGCTTTGAATGAAGACGATGAAGACGACAACGACGAGGGGGACGTAGATTTGTTTA
TGGAAGTGCGCGATGTCGACGAAACGCCTGAAGAAGCCAATGGTA



Found at i:10082 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140267734
    Period size: 9  Copynumber: 7.1  Consensus size: 9

      44026 GAAGTCTGCC

                *    
      44036 GAAGTCACT
          1 GAAGCCACT

                *    
      44045 GAAGTCACT
          1 GAAGCCACT

                     
      44054 GAAGCCACT
          1 GAAGCCACT

                     
      44063 GAAGCCACT
          1 GAAGCCACT

                    *
      44072 GAAGCCACC
          1 GAAGCCACT

                  *  
      44081 GAAGCCGCT
          1 GAAGCCACT

                      
      44090 -AAGCCCACT
          1 GAAG-CCACT

             
      44099 G
          1 G

      44100 CTGAAGCAAC


Statistics
Matches: 48,  Mismatches: 5, Indels: 3
        0.86            0.09        0.05

Matches are distributed among these distances:
   8    3  0.06
   9   45  0.94

ACGTcount: A:0.31, C:0.33, G:0.23, T:0.12


Consensus pattern (9 bp):   
GAAGCCACT

Left flanking sequence: Indices 43536 -- 44035
CTGGTGGCGACGACAAGAAGTTGGCTGGTGCATTGAAGAAACTCAATGTCCAGCCAATCGCCCCG
ATTGAAGAAGTCAACATGTTCCTGGCTGATGGAAACGTCTTGCATTTCAACAATCCCAAGGGTGC
GTTCGTCTATTTTTGCTCGTAATTATCATTAACAAGAGGTGGAACCGACATTGAACCATTAGTGC
ATGGTGCTCACTCTGCCAACACATTTGCCGTATACGGTGCTGGCCAGGTCAAGGACCTTACCGAG
CTCGTTCCCAATATTCTCAACCAGCTTGGCCCCGAGTCTTTGGCCGGGTGCGTAAATGCATCGAA
CTATTGACGTTGGTAACTCATGCACGCATTTAGCCTGCGAAGACTTGCGGAGACTTATCAGAGGG
CACAAGCCGCTGGTCAGGGAGGTGTTGCACCCGGGGACGACGACGACGACGAAGTGCCAGCCTTG
ATCGGCCCGGAGAGCTTCGAAGTTCCGGACGGCGAGAAGTCTGCC


Right flanking sequence: Indices 44100 -- 44599
CTGAAGCAACTTCAGAGCCAACCAAGGCCAACGACGTTGACTAAAACCTCGGAGTTGTGAAGTGG
TCCTGACTTGTTCTTTGATTGCTACTCGCATATATTGTGTGCAGACGTGAGTGCTATGTACGAAT
GCATATGAACTTTGTTGCAATTTAGTTGTATTGATGGCTCGTGTATATTTATAATCGTAAGACGT
TCCAGACCAGGAATGAGTGAGAGTTGTACAACGGGGGAACAGGCGACCAATTTGGTGGAGGAGAG
TGTCACATGCAAGATTGTCCAATCATAGGGCGGGCGCTAATCGATTGATGTGGCTATACCTTCTT
GGTGGCCACTGGTGTGTTCCTTCACTCTTGACCTCCGTCTCTCCGTCCTGTTTGAGATTACGCAG
AGTTCTATAGGTGCAAAGCGACGAATTCGAATGATAGTATGTGTTGCAATGGATCCTCTCAGATG
TCATGGTCAGATTGACTTGTAGCGTGCTAGTATAGCAATGTTGGG



Done.

rsol.ctg.fasta.s5740.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267735

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 80451
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25


Found at i:6245 original size:12 final size:13

*************Found a new SSR********************
 Sequences: ctg1113140267736
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       7965 GCAAATACAC

                     
       7975 CGTATCTAT
          1 CGTATCTAT

                     
       7984 CGTATCTAT
          1 CGTATCTAT

                   
       7993 CGTATCT
          1 CGTATCT

       8000 TTGCTTCGAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44


Consensus pattern (9 bp):   
CGTATCTAT

Left flanking sequence: Indices 7475 -- 7974
TAGATTACAAGTTGCCATGTCATCCGCGTAAGTCGTATGAATAATCAAAACTTGGCGTCGACGGC
AACTGACGGACGCGTGATTGCTTTCAGTGATGATGAACTCCCTGAGTAGGTCGCACGCTCCAATA
TTGACCTGATGTTAAATAAAATACAACCTTGTAGGTACTGGTACAAGGGAAAGACGCAACAGGGT
GCTGTTCAAGGAGGCCAACAAGGCCAGGGCGGCGGTCAGCAGGGTAGATAGGCATGGTACCATTA
GGATAAATGAATGGGAGTGAAATTAGTGTTAAATCAGGGCTGCAATATATCCATTTCTCTCGTAC
CATACGATAAATAGCCGACCCCATTACGCACGGTTGTATAGCTCTCTTTCAGACGAAGATTTCCC
GGATTTCGTTTCAAACATTCAAGTTTATGCCCAACTAATGCTTGCTCTGTTGTTTCTTATTATTC
AAATTGATAATTTACCCTGAGACCAAATCGTTGACGCAAATACAC


Right flanking sequence: Indices 8000 -- 8499
TTGCTTCGACATCCCAAAATCGGTGAGAGGTCCAAATGTGCGGTATTTGAAATTCCCGTTTATGA
TCTCCAAACCCCTGAAATGAGAAACTCACCTTCGACCCTTCTTCTTATCTACCCTACCTCTTGCT
TTGATAGAGGATCCACACTTTAGCTCGAGTCCCCTCTGCGCATTATATCCTGGCATAATGACCAG
CGGTCCTGTTCAAGCGCTATCTGATAGTGATCGGGCTGCGATCAAAGCTGCGACCGAAGGTCTAC
TGCCAGATGCTGAACAGTTACTCAAAGAGTTGACGAATATCGATACAACCAACCCACCTGGCTTA
AACTACCCGAAAATAGCATCGGTACTTGACGATTTCCTCTCGTCGAAAGGGTATGAAGTTGAACA
GATACCAGTACCTCTTGAGCTTCACCCTGAACTGGTGCCTTTCTCTGATCTTCCGCGTGTGAATG
TTCTCGGGAGATTGAAGCCCGAGTCCACCAACGATAAGGGAAGAG


Done.

rsol.ctg.fasta.s5742.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267737

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 6198
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24


Found at i:224 original size:9 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140267780
    Period size: 9  Copynumber: 9.0  Consensus size: 9

       1276 TTTCTTGGCC

                    *
       1286 TTGCCCTCC
          1 TTGCCCTCT

                    *
       1295 TTGCCCTCC
          1 TTGCCCTCT

                     
       1304 TTGCCCTCT
          1 TTGCCCTCT

                     
       1313 TTGCCCTCT
          1 TTGCCCTCT

                     
       1322 TTGCCCTCT
          1 TTGCCCTCT

                     
       1331 TTGCCCTCT
          1 TTGCCCTCT

                     
       1340 TTGCCCT-T
          1 TTGCCCTCT

                      
       1348 ATTGCCCT-T
          1 -TTGCCCTCT

                      
       1357 ATTGCCCTCT
          1 -TTGCCCTCT

       1367 ATTCCCTCCA


Statistics
Matches: 69,  Mismatches: 1, Indels: 3
        0.95            0.01        0.04

Matches are distributed among these distances:
   8    1  0.01
   9   67  0.97
  10    1  0.01

ACGTcount: A:0.02, C:0.44, G:0.11, T:0.42


Consensus pattern (9 bp):   
TTGCCCTCT

Left flanking sequence: Indices 786 -- 1285
AATTTCCTCATTAGTAATCTGGAGCCTTCCGGGGAGTCCCTGCGAGACCAACAGGCCGAATTCCG
TCGAAGCGCACGATTTCAATGCCCATTACATAGATAGCAATCACGATATCATTATTCGATACATT
CCACACAACCTATTTGTGCGTGTCAGATTCAGCTACCACCGGGACTAATTCTTGATCAAGACACT
GGGGACATTTTTCATTGTTGTCCAGAAGCGCAATTCCATGCGTCTCACACAGAGCTTGGCGAGGA
CACGAAGGACATTTTTCAGTGTCGGTCAGAAACGCAATTCCATGCGTTTTGCACACGGTTTGATG
CGCTGTGCAGTATCCCGGACCCTTCCTAGGAAGCGGGAGGGCTAATAAGCTTGGGCGAGTAGTAT
AGCGAAGGAATTAGAGCAAATACCTGCAATTTCCCTTTCCCTTGTTTCTAAGAGGACAATGATGC
GTCGTATGGGATTTACGTTTGGTATATTCCTTGCCTTTCTTGGCC


Right flanking sequence: Indices 1367 -- 1866
ATTCCCTCCATAGTTAATGCTCTGTTTGGTTAACTCACTGAACAGATAAGATACATGGCATTTTA
CGTTGAACGTTTCGAACATACCTGAGTGGTTTAAGCAGAGTGAAGTGTCCTACTGGGGGGTCTGA
TGTCTGAATTTATAGGTCGGAAGTCTGGCTCGAGCCACTTCTACGCAAATCCAATCCTCATGGTT
AGCCCACTCAAAGATATCGGGCACCATACCTCTCTCAGAGACAAGACTCTGTGTTTGTCCCTGAG
GAACGAATACAAGGGATTCAGACGGCTTTGCCCAATTGACGGAGGCAAGAGATGATGATATATTG
TGGCATTCAGGGGGTGTAAGATCTAATCGAGTTAGTTCTGAAACCTTGATCACTCCAGATCTAGA
GCAATCTGGTGATTGTGAGGCTGCAGAGCACAATGTTCCCATTGTGGCTCTACCATGTGCCCACA
CCCTACTATCCGGATATCTCCAGTCCTCAAGGGGTGCAGCGGCTT



Found at i:1307 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140267812
    Period size: 9  Copynumber: 3.3  Consensus size: 9

      12669 CCAGCAATGT

                     
      12679 CTTTGCCAA
          1 CTTTGCCAA

                     
      12688 CTTTGCCAA
          1 CTTTGCCAA

               *     
      12697 CTTCGCCAA
          1 CTTTGCCAA

               
      12706 CTT
          1 CTT

      12709 CGCCCATTTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.20, C:0.37, G:0.10, T:0.33


Consensus pattern (9 bp):   
CTTTGCCAA

Left flanking sequence: Indices 12179 -- 12678
TTCGCCGGGGGCTTCTTCTTGCACGCCAAAATCCGAGTGTCAGTTCCCGGTGTTACCGATTTCGT
GGTTAGCACTTGATTTCCTTTTGAGAATAGCACCTGAGATCGCTGACAGTTGAGCAAATTCTTTA
CTCCACCACTGTTTGCCGCACGCGCCTTTACTGTTCCTGGACTACGATGCGCATTATGACACAAG
TAGTGCTGGGCCTGAGACGAATCGGCGCTTGGAATGTATTGATGAAAAAGCGACCCTATCGACTC
GTTGGTTCGCCGATTTCAGGACATTAGCTATGGTGTCCTAGCTCGAAGGGCCCACAGCTCTCTCT
ATAAAACCGGCCTCGTAGGTTTCGCACTTAGTCGGCATCATTTCCCTCGCCCCGCTCTTCTACGA
CCCTCACGAACGACCTTACGTTGCTTCTTCACTACCCTAGGACTCTCTATAGGACGCCTATCTCG
TTCTTCTTTCACGAACAAAATACGAATTATCCCTGCCAGCAATGT


Right flanking sequence: Indices 12709 -- 13208
CGCCCATTTTACCCAGTTCTCCAGACTCTCCTCCCCCGATGCAGGATCTGTCTAGGACGTCGATC
ACTATTGTGCGTCCTCCACCTACCGCCCCCGAAGACAAGCGCATTGCCCATGTCAAACGTCAATC
ATGGATGACCCACAAGTCGCGCTGGTCGGGCTCATCATTTTCGTCAACAACGTCAGCGACCCCGT
TCTTCTGGAATCGGCCGAGGAGTTTGTCAATCTCCGACCCCGAGAAGGTTGCACAACTCAGTCAG
CAGAGTGTCGACAAGGCTATCGAGGATGACATTGCGGCTACGGAGCCCAAGGAGCGCGACTACCA
CCGGCAAAGCCCATATTGGCTTTTCACTATGATTTGGTGAGTTTGTCTCGGGGGGTACATCGTTT
GATACCCCTAATGATCTCCAAATCACCCTGCAGGGCTCACCAAATCTGGTGGATCGTCACTGCGT
TGTGCAACATCCCAGTTTATTTGCGACTGGCCGCTCTTCCGTCCG



Found at i:19525 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140267813
    Period size: 9  Copynumber: 2.8  Consensus size: 9

      13332 TTCCGTACAA

                     
      13342 CTTCCTGCT
          1 CTTCCTGCT

                     
      13351 CTTCCTGCT
          1 CTTCCTGCT

                   
      13360 CTTCCTG
          1 CTTCCTG

      13367 ATCGTCCTCC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.44, G:0.12, T:0.44


Consensus pattern (9 bp):   
CTTCCTGCT

Left flanking sequence: Indices 12842 -- 13341
GTTACGTTTCATAAGATCGACTCTGATGGAAGATAAGCAGAGCGACTATGGGCTTGGTGTTTCTA
ACACAAGTGCTACATTCAATTCGGCTTCTACAAAGAAATCCGAAGAGACGACTGAATTGAATTCA
TCCCGCAGTGAAGAAACAGACCAACGTGATGTTGCTGTGTGGAGATTGGAGATTAGGCCTGGTGC
ACAAACGGTCACGCTATACAAGCTTGAACCATTTGAAGTAGAAGAAGTGGCCAATGGGGAGGATC
GAGTCGGGTTCCTGCCAACCTGGTTCTGGGAATCTGTTGTTACCAAAGTGTAGTAGTTCATGTAT
GTAATCAATATATGCATATATGTTACATGGGTCTGTCACGGGCTGGAGCGTAGTCCAAGGTGATG
CCACCAGCTCCAAATACCAATCTAAGTTTCCTTTTGTTTCCCCTTATCTTCGACGTTACTCTCTT
CGTCTCCCTCTTCACCGGTGTTCGTTTCGTTGAATTTCCGTACAA


Right flanking sequence: Indices 13367 -- 13866
ATCGTCCTCCACTTGTTTCTCTCTCCGATAGGCGCTGAAGTCCCAATCAGGCTCTTCGTCCGAAT
CCTGTTCGAACCATTCGGGATTGTATTGGAACTAGGGGGTTGCAATGAGCATTGGGGTTGACCCC
AAATCATTTGGCTTACCAAGTCTCTGCCAGACATGCCGATGTTTTTGCCTGCAGCAGCTTGAGCA
TCCTTGGCTTTTCGCATAGCGTCCTCCTGTGCTGCTTTCCTGTCTAATCGAGTCTTCTTCCATAC
AGCAAAAGTTTCTGGCGTGACCGGCGTAAGATTGCTCCCTAGTTTGTGTCGCTATTGGGGTTGTT
AATTCCGGAGCAAAGATTCACAGTACCGTCTACACACCTCGACTTCCAAGAATTCCTCAAGTGAT
ATTGTGTTTGCCTTTGCTGCATCTTCCGCAGCTTTCTTCTCAGATCTTAAGATAAAGCCTGGAGG
TAGGGCATGTCGATACATGCACTTTTCGCCGTTCGGGCACTCCCA



Found at i:40714 original size:45 final size:45

*************Found a new SSR********************
 Sequences: ctg1113140267817
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       9149 GGAGCTGGAA

                     
       9159 TTGGTGGTC
          1 TTGGTGGTC

                     
       9168 TTGGTGGTC
          1 TTGGTGGTC

                   
       9177 TTGGTGG
          1 TTGGTGG

       9184 CCTTATTCTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.08, G:0.48, T:0.44


Consensus pattern (9 bp):   
TTGGTGGTC

Left flanking sequence: Indices 8659 -- 9158
CCGTCTGTGCATGTCACAATCGCCACTCAGCCCGTCGAGAAGTTCAATTTGGGACTGTTTTACAT
ACATGTCGCGATACCGACGGGGCTCAAGCTTGACGAGTTTGCGAATAGTTTTTGGAAAACCTTAA
AGGACTCTGTTCCTGAGTAAGTCTTCTGGTAACTACGTCAGAAGCCTATAGGAATGACTACATTT
CAGCATCGTGGAGGCCCTATTGACGGAGGCGAACATCGAAAAGCTTGCGAAGGTCTTGACCATAG
TTGTGGGCGAGAAAGTCATCGCCGGAGCGGCCTCAAAATTGATATGCCGACAGAAGAATTCCTCC
GAGAATAAAGATGAAAAGAAAGATGAAAAGAAAGACGAAAAGAAAGGCAACAAGAAAGGCGACAA
ACAAGAGAACAAAAATGATAAAAAGAACAGGGGTGGCAATGAACCCAAGCCTAACAGGCAGCCCC
CACTAAAGGGGCCTCCAAATATATCTCCCGCCGGCGGAGCTGGAA


Right flanking sequence: Indices 9184 -- 9683
CCTTATTCTTGGGATTATTGGAGGCGGCCTCGCTGGGGGCATATTGGCAGGGGTCCTCATATACG
TAATCTCCCGAGACAAAGGCAAATCGACCCCAAGTAAGCCCATCGATAACCTTAATCCTCCCGCG
CCGCCATCTCCGGGACCTATGTACGCAATCGAGATCCTTCTGCGCAACGCACTCATACCAGAAGA
AAAGTTCACGCAATGGGAAACATGCCACAAATTCGCCGATGCGCTTGTAGCTGCCAGAGATTGCG
CTTTAGAATATTACTCCGCGATATGCGTCCTCGGGAAGATTCTTGGGCCTGAAGGGGTGTCTAGA
TCACTGGGGAACAAAACCTTCAAATACTACCGATACCGATACCAGTTACTCCAATACGATCTCTC
CACGTTGGGCAAACGATTCGCCGACATATGGCTCAAGAAGCCAGACGGCCCAATCACGTTTACCC
CTCGCTCAACCTCCAATAGTCTCATGCTTGATGTGTCTTGGGAAT


Done.

rsol.ctg.fasta.s58.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140255649

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 1061
ACGTcount: A:0.19, C:0.30, G:0.24, T:0.28


Found at i:367 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140267832
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       4750 GTTTCTCGCA

                     
       4760 CAATCTCCC
          1 CAATCTCCC

                     
       4769 CAATCTCCC
          1 CAATCTCCC

                    
       4778 CAATCTCC
          1 CAATCTCC

       4786 GATAATAACG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.23, C:0.54, G:0.00, T:0.23


Consensus pattern (9 bp):   
CAATCTCCC

Left flanking sequence: Indices 4260 -- 4759
AATACGTACGCTGACGTACATCCCAGAGGCTGATACCGTTGCTACTACACAAGGCTAGAGCGGCC
GCTCAGGACTCAAGGTGTTGTTATAGTATTGCCACTAATCCATCCCATTTGTATGAAGTATCAGT
GTCATTTCGCTTTAAACATGAATGTTTTAGTCATAAGAGAAATGAGGGCTCAGTACACGTCATTG
CTTTGAAATTCACCTATGACGTTTCTGCTTACAGCAATTTGTTTTATGTCAGATCTCACCTTTCA
ACCACTCGACAGTCGCAATTCCACAAATCGTCGCTAGCCTTCTAAACCAGCTCGACATTATTGGT
GGATGAGGTGCCGCTGAGCGGTTCACATCCACCAACAAGCAGAGGAATAGAAGCGTTAAATGAAG
GTGCACATCCTGCTAACAATTTGTTCGACCTAAAGATATCACGACACTAGCTTGCACCCAGTGCA
TCCCCCAATATCAAGCCAGTCGGAGTCACCAACTCGTTTCTCGCA


Right flanking sequence: Indices 4786 -- 5285
GATAATAACGAATGCTGGACCACGCATGACAAGAGCATCAACTCAGGGCAGGGAAGTGGATCTGG
GCCTGGATGGTTCGGAAGATTGTAGGACGCAATAAAAATGTATGTTTGTGTAATAATATGAATAG
CTCACAGGAGCGTGGCTCGGCACTTCAATGCATGTGATCATATAATGACGGCTTGGAGAACATGC
GAGTCATTATGCTTGAGCTCAATCGGTTGAATCTCGGTCAAACTACAGTCCTGATGGAGAATTTG
AATTTACGTATGTGCTGCTTTTGCCAAACATGTGCATCGGAAATAGTGGCGGAATCTTTGTTATA
TCAGACTAGTATCGGTTACATTAAGGTATGATAAGTGAACATATCCGAGGGTAGCCTTATGATAC
ACTTGTGTATATATTTCAAGACGCGCAGAGCAGGAGTATATGAGCCCAACGGGAAGCGGGTGGCG
AGATTAGTCAGAAACGCGGCCGGTGCTTCCAGCGTTTATTGCATG



Found at i:8187 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140267851
    Period size: 9  Copynumber: 2.8  Consensus size: 9

      14622 TGGAAGGCTT

                     
      14632 CCAGAGACA
          1 CCAGAGACA

                     
      14641 CCAGAGACA
          1 CCAGAGACA

                   
      14650 CCAGAGA
          1 CCAGAGA

      14657 GGGGGGACCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.44, C:0.32, G:0.24, T:0.00


Consensus pattern (9 bp):   
CCAGAGACA

Left flanking sequence: Indices 14132 -- 14631
ATACTAGAGGTTCGGTAATAGTACCATACCTCGGGTGAGAAGCAGATAGATAGATATAAAAGTAT
TCCCAGTCCTGCAAACGCGCTGAGAATCCGTGATAAACTTATCCAATAATGCCAAATTAGTAGCG
AGGGATATTTGGACTCGGATGGGGAAACAGGCATGATTGTGAGAGCAAAGAAACCATAGGCACCG
CGGCCGTACGACAGGAAGTTTTCTACTACTGAGCCTGAGAATTACAACCAAAGGTTTTGTTATAC
AAGTCAAATTCTGCTGGAGGGAGCGTGGAAACTCGGCGCTAAACAAACATTGTGCTGCCAATGAC
CAATCCTAGACACTCATGTGGCCGAGTTTCAGACCGTCGCATATATGAGAGGTATTAATACGTAT
TCCTTTGAGATGTCAATTGCCTTTGCCTAAGACCACCCAGTTGAACCCCCTTGAAACCTGTACAG
TCGTATGGGGGCCATCTGCAAAGATGGTGCTGCTCTGGAAGGCTT


Right flanking sequence: Indices 14657 -- 14675
GGGGGGACCTTCTCTGGAA


Done.

rsol.ctg.fasta.s5859.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267854

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 7858
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28


Found at i:1921 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140267858
    Period size: 9  Copynumber: 3.2  Consensus size: 9

        370 GGGGGAAGTA

                     
        380 TACCAGTGC
          1 TACCAGTGC

                     
        389 TACCAGTGC
          1 TACCAGTGC

                     
        398 TACCAGTGC
          1 TACCAGTGC

              
        407 TA
          1 TA

        409 GGTAGCATCT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24


Consensus pattern (9 bp):   
TACCAGTGC

Left flanking sequence: Indices 1 -- 379
AGCTGTTTTGTATTTCCAATTAATTTCCAATTTTCCATATATGGTAGCACCCAATTGCAAATAAA
AGCTAACTTTTGATCCAGCCAGCCAAACTTTATCCCCTTGTCATAAACCTGACTAAATGCTATAA
AATACCCCTGGGTGAAGATTGGGTGGGCCCCTACCTGGACTGGGGGAGGCTCCAGTGGTTGAAGT
GGTTGATCAGAGTCAGGTGACCACTGACAGAGCCTTCTCTCCCAGCTGACTTGGAGTAAAATCTT
TTGGCCCAGTCTACCAGATGAGGGCCTGTCTACCCACATCTACAGAGATACCTCCCATCTACCAG
CCTCTACCTAGCATCTACCTAAAATGCATATCTTCTAGGTGGGAGGGGGAAGTA


Right flanking sequence: Indices 409 -- 908
GGTAGCATCTACCTAGAGGTACCTAGTTTTTTGCTTTTTGCTGATGATCTCATGTCCGACCTTTC
GGAAACACGCATACAGACACCCCACGTGACATTGGCGACATTATCTACTCAGACGTATGGGGACC
CGCTCGAACGCAATTGCTACAAGGCAATTTCTATTATATTGTTTTTATCGACGCTGCCTCCCGCT
TTTCCTTTATTCATTTCATGCGACACAAAAGCGAGGCTGTCGATCGCTTCATTGCCTTTGCAAAT
TTCATTCGAACTCAAAAGGGAAAGGAAATCAAGCGCATACACTTTGATAACGGCAAGGAACTCAT
CAACAAACGTCTACGCGAGCATTGCGACCAAACTGGCACCGAAATTACTACCACTGCACCTTATT
CTTCGCAACAAAACGGCCCCTCAGAACGAAAGCATCGCTCTTTCGCCGATAGCTCCCGATCCATG
ATGCACGGTCATTCCAACACTCGAGACAAGCCCTTCCTCTGGCAG


Done.

rsol.ctg.fasta.s5868.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267863

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 8055
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26


Found at i:4733 original size:10 final size:10

*************Found a new SSR********************
 Sequences: ctg1113140267883
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       4969 GTCGGCTTGG

                     
       4979 CAGCATCTT
          1 CAGCATCTT

                     
       4988 CAGCATCTT
          1 CAGCATCTT

                   
       4997 CAGCATC
          1 CAGCATC

       5004 CCGCGATCGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.24, C:0.36, G:0.12, T:0.28


Consensus pattern (9 bp):   
CAGCATCTT

Left flanking sequence: Indices 4479 -- 4978
GAACCCCCCAGCGCCCTTGGGGTCTGCTCCCCTGAAGGGTTCAAATCTGAGCAATCGATATCTCA
ATTACGACCCTACACGCCTTCTCCTTCTGTTTCGACTTTTGCCTCATCGTCGGTGACTAGCTCCA
CTATTGCTACGCCCTCTGCGAACCCTCCTACTCGACCAGAGGTTGCACAAGTGCTAGAGCGAACA
TCCGAGGCATTATTTCTGCACGCTCAACAATCCAACGAATCTCTTACGTCAGAGTCCGTCTACTC
AGATACTAATACTGCTCCCGAAACCTTTGACGCAGCTGAACCAGAAGACGACAAGCCTGAGCCCG
AAAAGATCCCAGAGATAGACCTAGAATCGAAAGCAATCGAGGTCCCACCCGAGCAAGTCCTCTCT
GATTCCGCCGTCGAATCACTACAAGTCGAACGTCCGCTTTCTCCCGTTGGTGGTATGTGTTTTCG
TGGCATCTATAAAGCAATTAACTCAGGTTTTCTCAGTCGGCTTGG


Right flanking sequence: Indices 5004 -- 5503
CCGCGATCGCACAAAGCCCACCATTCGGCCATCACTGCTTGGTTTCTTTTCTCGGTGGGCGGACA
AACGCCCACCGTCCGGCAAGGACCCAAAGGTTCGTATGAATACGACTGGCCCATGCATCATCTCA
CGCTTCTGACACATATAGGACAAACAATTGGGGGGACCTATTTCCTTTTCACACGGAACGGGTGT
ACAGCACGAGTCCTCTGTTAATGGATCAGCCTTTACTAGGTTGAGAAATAAATCCACCGAAAAGC
TTGCCGCTCTGTTGGCTGTTGGCGAAGATATCAGACCGTCATCTAGTTCGATCAGGTCTTCACGA
TTCAAGATCGGTAGTCGCAAAACCAATTCGGGATCCGCTCAAACGGGCGAGAGGACAGACAGTGG
CGTGACGCAGGCAGCTCCACAAACTGCAGCTCACTTATCCCCTCCCTCCAGCCCACCTCTAGAAG
CGAGAGCTGGGCCATCTACAGACGTAGATCCTCTTGCTGAAGAGA


Done.

rsol.ctg.fasta.s5890.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267885

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 5167
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27


Found at i:3648 original size:8 final size:8

*************Found a new SSR********************
 Sequences: ctg1113140267894
    Period size: 9  Copynumber: 3.4  Consensus size: 9

      35029 GCCGGACCCG

                     
      35039 GAGGACACT
          1 GAGGACACT

                     
      35048 GAGGACACT
          1 GAGGACACT

                     
      35057 GAGGACACT
          1 GAGGACACT

                
      35066 GAGG
          1 GAGG

      35070 GAGTAGAGGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   22  1.00

ACGTcount: A:0.32, C:0.19, G:0.39, T:0.10


Consensus pattern (9 bp):   
GAGGACACT

Left flanking sequence: Indices 34539 -- 35038
ACAGATTACGGTAAAGATAGGGATCGCTGCTGAAACAGGTTGAACACCGTGATATCAGCTGCAAC
CTCGCATTGAATCAGGCCCTGTCACAAGAACAGCAAGAATAGATTAAGCGAAAAAAAAATACGTT
TAGGATAGCGAGGAGGAGTGCAGTGTGCGCACTCTTTGCTTGGCAAGGCGACGTAGGAACCAGTT
CAAAATGTAGCTCCAGCCGACTGCGCCGGAGGCCAGGTACCGTCCCAGGTCAAACAGTGGAGAAC
CTGCTTTGGATTGACTGGTTGTCCTATGGCTTTGGCTGACTGGCTGAGTGAACAGAAGATTCGAG
TACTGCAGGGAGCAGAAGGAGTAGCAAGGACTCATCTCATACCGGTATACCCTCTAGGTGCCCAA
CACGCGCTCACCTCAAAACATCAACGCATGGCCAGGGGGTCTCAAACGGCACCCCCCTTGAAACC
AATGTGAACCGGTTCTCCGCGCGAGCGACGTAGCTGCCGGACCCG


Right flanking sequence: Indices 35070 -- 35569
GAGTAGAGGATCCGATGCTACAAGAAAGTAATGCCAGCGACCTGCAGGTAGAGGAGTCAAACTTG
GGTGACGTTGGTGGTGAGCTTACGTGCTACATCTGCAAGAGTACCCGATTATCTCTTCTCCTGAA
CGCAAGGCATATGCTACTGGTAGCTGTTTGCAGGCCATTGAAGGGACGAAGTAGGGGGCAACATG
CGTACCATACTGGTATGAACTCTTTCTCTCTCCTCCCTTCCCATCATCATTCGTAAAACGATTTC
TCACCACAAGTCGCTAAGCCGCTTGGCTCATAGCGCAATACTGCCCAGAGAATGAAAGCGCAGGT
GAATGTCAAGGGATGTTATTCAGATGAAAAGGATTTGAAAAAAACGGGACATGTCTGGACAATCA
CCCATGCAGCCGACCGGCACTTTGATTTCGGCACCGCGTCCGGAGTGAAAAAAACGATACAATGT
GTCCCACTCTAGGCCCTCTGCATCGGGGGCCATGAGGAATGCCGA


Done.

rsol.ctg.fasta.s5901.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267896

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 4090
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25


Found at i:512 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140256880
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       1307 TGGAAGGCTT

                     
       1317 CCAGAGACA
          1 CCAGAGACA

                     
       1326 CCAGAGACA
          1 CCAGAGACA

                   
       1335 CCAGAGA
          1 CCAGAGA

       1342 GGGGGGACCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.44, C:0.32, G:0.24, T:0.00


Consensus pattern (9 bp):   
CCAGAGACA

Left flanking sequence: Indices 817 -- 1316
ACTTACCCACAGGTGTGTGACCTTCGCCCCCTCGGACGTTCCGACCCTTTCCTATGATTAGCAAT
ACTCAATTTTTGCGAAATTGGGCATTCATTCATCATTTGCACACTACGAGTATTAACCGTGACCC
TATGCTTACCATACCGACGCTGCCTGCCGATGGGAGACCCAAGCTTGCTGACTCGAGGGTGCTCA
TGCTCAGAGTGCTGGCAGCTCGTCAGAATACTCGCGTTTCCAAGCATGAGTGCGACTTACTCTTG
CTTGCTCTGGACCAACCTAACCCAACCAACCTCAACCAACCTCAACCAACCGCTGCGCATCTGAA
CAACACACCCGAAAAATTACCGGATCGCTTCGGAGAAATCCGGATTTCAGGACCTACTCGTTTAG
ATCTGACAACTTCTGAGTACTTGCGGAGCCCTCAGAAGCACTCCACGAGCACGCAAGATATATAT
ATGCGCTCCTCCATCTGCAAAGATAGTTCTGCCTCTGGAAGGCTT


Right flanking sequence: Indices 1342 -- 1441
GGGGGGACCTTCTCTGCAAGGCTCCCAGAGACGAGTCAGGGTCTAGTTCTCAGCAGCTATAGTTC
ATCTGTGTTTGGCCTCATTTGTACATATTATGTTT


Done.

rsol.ctg.fasta.s5934.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267929

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 41363
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26


Found at i:27539 original size:19 final size:19

*************Found a new SSR********************
 Sequences: ctg1113140267931
    Period size: 9  Copynumber: 11.6  Consensus size: 9

      11625 TCAGCATCCG

                    *
      11635 CCTCCTCCT
          1 CCTCCTCCA

                     
      11644 CCTCCTCCA
          1 CCTCCTCCA

              *      
      11653 CCCCCTCCA
          1 CCTCCTCCA

                     
      11662 -C-CC-CCA
          1 CCTCCTCCA

              * *    
      11668 CCACATCCA
          1 CCTCCTCCA

                     
      11677 CCTCCTCCA
          1 CCTCCTCCA

                    *
      11686 CCTCCTCCG
          1 CCTCCTCCA

                      
      11695 CCAT-CTCCA
          1 CC-TCCTCCA

                 *  *
      11704 CCTCCACCT
          1 CCTCCTCCA

              *      
      11713 CCGCCTCC-
          1 CCTCCTCCA

                     *
      11721 CCATCCTCCG
          1 CC-TCCTCCA

                 
      11731 CCTCC
          1 CCTCC

      11736 GCCGCCATCA


Statistics
Matches: 73,  Mismatches: 12, Indels: 14
        0.74            0.12        0.14

Matches are distributed among these distances:
   6    3  0.04
   7    3  0.04
   8    5  0.07
   9   59  0.81
  10    3  0.04

ACGTcount: A:0.11, C:0.67, G:0.03, T:0.19


Consensus pattern (9 bp):   
CCTCCTCCA

Left flanking sequence: Indices 11135 -- 11634
GGCCGATGCTATATGATTCGCTGAGAAGGAGAGAAGAAACACAGCATTGGAGCCGGCGTCATTGT
TTTGTTCGGCGGGAGCTTGCATTAAGCCGGTTACACCCACAGCATTAGAATCATACGCGGTTCAT
TTTCTCCCTTCCATCCGATGTGGTAAACAGGCGTCATCCTTGACTAACAGACACACAGAGGTGGC
TCTGTATCTCTGCTCGGCGTATAATATACTAAAACACGCATACAATGACTTGATTCGCTCGCACA
TAACTAGGAGTTTCAACATTTGATCAAAAAGTATTAAATATGCGAGTAGTACCAGTCTCGAACTT
CTCATGATCATAACCGCTGGTGCTTGATTAACAACGTAAATTCAGGAGAAGAGATTGGGGGTGTT
TAAAATAGAGTATGAAGTCCTACAAGCGAGGAGTGACTGGGCTACATAGGCTTAACTGATGGTAC
AATTCTCAGCTGGAGAACCACCAGAGTTTCTGAGATCAGCATCCG


Right flanking sequence: Indices 11736 -- 12235
GCCGCCATCACCAGAGTACCAAGCTCCCCCACTGTATGCATGGCCTCCTCCCCTGTGGCTATGAG
ACTTTCGAGACGCACGTCTATCATATTGTTCATTGAACGGTTTACTCGAGTTGCAGCCCATTGTA
TAGTATGGTTGGAGTGGGATTGTAAGAATATGTGTATAACGTGTTAGAGTAGTGATTGAAGAATG
AAGTAGCATATTGCCATGGCTTTTATATGTCTAGGAAGCGATACGGCGCGCTGGCTGTGACCTCA
GTGGAGTGCCATGATAGCGCTCCCTTTGTTTCATATCGACTTCTATCTGATTGATGGGAGGCAGT
GGAGTACTGGATTAACGGTTCATGATGAGGAGTTACCTTGCTTGCAAGGTCTCCACCCCTCCCAA
AACTAAATTGCGATATACAAAAGATTTATACTGGCTGAATCCTGTTTGTAGGATGACGTAGTAGC
CTATGGCCTAAGTCCCTCTATGCTTTGGGGCGCATTCATATGCCT



Found at i:13382 original size:21 final size:21

*************Found a new SSR********************
 Sequences: ctg1113140267932
    Period size: 9  Copynumber: 3.4  Consensus size: 9

      17652 AATTTCCCCC

                *    
      17662 ACCATCACA
          1 ACCACCACA

                     
      17671 ACCACCACA
          1 ACCACCACA

                     
      17680 ACCACCACA
          1 ACCACCACA

                
      17689 ACCA
          1 ACCA

      17693 TGCGATCCCG


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.45, C:0.52, G:0.00, T:0.03


Consensus pattern (9 bp):   
ACCACCACA

Left flanking sequence: Indices 17162 -- 17661
CGACGAGACTGATTTGTTTTAGTCTGGTTCGGTCGGCAGCCTTTGGTACATCGGCATCTTGGCAG
GCAGCCTGCCTAGTGAATATTCCCGACTCATTGGATGAACAGCCGAGTCGCTGGAGGAACAAAAG
AATCATAAGTGATGCTATCTGACCCCACTTTTGTCAATCTACCAACTCGTTGATATGTTATTTCT
GTCGCTAGTGCGTTACTCGATTCTGTTAACTTGTAATTGACAACAAGATTGAGTGAAATATCTAG
ACGATTTGTTATAGACCCCTTAATTCCAACTAATGCTTGAGCGTACAGCGAGCACTGGTAAAAGA
CCAAAAAGCCGAGTACCTACGGAGAGTCGGGTTTTGGGGGTCTAGCCTTCCCTCGGGCTCCGAGG
ACTGCCGGTACCGCCCGGCCCAACGAATTGCAAATACAGGACTCGCCGCCGGCAAATGGCCGTCA
TCTTGACCACCCATGATCGGCGATCACCTTGCTCAAATTTCCCCC


Right flanking sequence: Indices 17693 -- 18192
TGCGATCCCGCGTATCCGACTTTGTCCGTTCGCTCCAAGACGAAATCGTACTCGCCCTCGAATCA
CTGGACCCCGAAGGCCCCAAATTCATCCGCGACTCGTGGACTCGACCCGAAGGTGGCTCCGGCAT
CTCATGCGTCCTCCAAAACACCGACACACCCCGAACACACCTATCCACCAACGCACCCGCATTCG
CCCCGCTCGAAAAAGCCGGGGTGAACATATCGATTATTAACGGTCGATTGCCTCCCGCTGCGATT
GCACATATGCGCGCGGACCATGCGGGTTTACCTGTGGACACGAAACGGTTGCCGGTCGAGGGGTT
GCCGTTTTTTGTTGCCGGGTTGAGTTTGGTGATTCATCCGAGGAGTCCGCATGCCCCGACGGTTC
ATGCGAATTGGAGGTATTTTGAGATTGATGAGGCGGATGTGGACCAGGGTGATGAGTCGGGTGAG
TAGAGTGTAAGGTATCAGGGGTGGGACTGATGGTTGGGTTAGATC


Done.

rsol.ctg.fasta.s5941.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267936

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 7259
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24


Found at i:1723 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140267958
    Period size: 9  Copynumber: 6.3  Consensus size: 9

       2553 AAGCCGGCTT

                     
       2563 TGGGGGCAA
          1 TGGGGGCAA

            * *   *  
       2572 CGTGGGAAA
          1 TGGGGGCAA

                 *   
       2581 TGGGGTCAA
          1 TGGGGGCAA

                     
       2590 TGGGGGCAA
          1 TGGGGGCAA

                     
       2599 TGGGGGCAA
          1 TGGGGGCAA

                     
       2608 TGGGGGCAA
          1 TGGGGGCAA

               
       2617 TGG
          1 TGG

       2620 ATTCAATGGA


Statistics
Matches: 40,  Mismatches: 8, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
   9   40  1.00

ACGTcount: A:0.23, C:0.11, G:0.53, T:0.14


Consensus pattern (9 bp):   
TGGGGGCAA

Left flanking sequence: Indices 2063 -- 2562
ATGAAGACTTCTGTCATTTCTGTACTCGTACTAGGAGCATCTTTCGCTGTCGCCCTCCCATTACG
GGAACAACCACAAACAGTAAGTCATGTTCTCCAACTGCACCCAGCATGTCCTCATCTACCCTAGC
AGAACCTCGAGACCCGCGACAATGCACCCAACGCCGGGACTGAAATTCGCTCACGTCAATTTGGA
CTCGGGATTGTGGGTCTGGTTGGCACTACGGCAAGTATCTCCAAAGGGTACGACAAGATCAGTGT
ACTGAAGCGATATGAATCATCCAGATTAACCAGATTGTCGGGATAGTTGCTGCAGGTAGAGCAGC
TCGTGCTGCCGCGGCCGCAGCTGCCGGTGCTGCCGGAGCTGGGGCTGGAGCTGGAGCCGGACTCA
GAGCCGGGGGTAAGCGGTGCTGGTTTCGGCGGTAACCGAGCCGGCTTTGGAGGCAATGGTGCCGG
TTTTGGGGGCAACAGAGCCGGTTTCGGGGGCAATAAAGCCGGCTT


Right flanking sequence: Indices 2620 -- 3119
ATTCAATGGAGGCAACGCGTTCAATACGGGTAACGGGAATGCGGGTAACGGGAATGCGGGCAATG
GGTTCAATGGGGGTAACGGGAATGGAGGCAATGGGTTCAATGGAGGCAACGGGAATGGAGGCAAT
GGGTTCAATGGGGGCAACGGGAATGGGGGAAACGGGGTCAATGGGGGCAACGGGAATGGAGGCAG
CGGGAATGGAGGCAACGGAGGCAACGGAGGCGACACGGGAAACGGGGGCAACGGAGGTGGTGAAG
GCAATGGAGGGGGGTTTGAAGGCAACGGAGGCAACGGAGGCAACGGAGGCAACCAGGGCAATGGA
GGCAATGGCGGTGGGAATGGGGGTAACCAAAACACGAATAACAATCAAGGTGGTGGCGGGGGCAA
CGATGGAGACGATGCCGGGCCCGATGGAGATGACAACGAGGGTAATGGAGACAATGCCGGGCCCA
ATGGAGACAATACCAAGCGCAATGGAAAGAATACCTCGGGCAATT



Found at i:2600 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140267958
    Period size: 9  Copynumber: 5.6  Consensus size: 9

       2812 CAGCGGGAAT

                     
       2822 GGAGGCAAC
          1 GGAGGCAAC

                     
       2831 GGAGGCAAC
          1 GGAGGCAAC

                       
       2840 GGAGGCGACAC
          1 GGAGGC-A-AC

                 *   
       2851 -G-GGAAAC
          1 GGAGGCAAC

              *      
       2858 GGGGGCAAC
          1 GGAGGCAAC

                 
       2867 GGAGG
          1 GGAGG

       2872 TGGTGAAGGC


Statistics
Matches: 34,  Mismatches: 3, Indels: 8
        0.76            0.07        0.18

Matches are distributed among these distances:
   7    2  0.06
   8    2  0.06
   9   26  0.76
  10    2  0.06
  11    2  0.06

ACGTcount: A:0.30, C:0.20, G:0.50, T:0.00


Consensus pattern (9 bp):   
GGAGGCAAC

Left flanking sequence: Indices 2322 -- 2821
TACTGAAGCGATATGAATCATCCAGATTAACCAGATTGTCGGGATAGTTGCTGCAGGTAGAGCAG
CTCGTGCTGCCGCGGCCGCAGCTGCCGGTGCTGCCGGAGCTGGGGCTGGAGCTGGAGCCGGACTC
AGAGCCGGGGGTAAGCGGTGCTGGTTTCGGCGGTAACCGAGCCGGCTTTGGAGGCAATGGTGCCG
GTTTTGGGGGCAACAGAGCCGGTTTCGGGGGCAATAAAGCCGGCTTTGGGGGCAACGTGGGAAAT
GGGGTCAATGGGGGCAATGGGGGCAATGGGGGCAATGGATTCAATGGAGGCAACGCGTTCAATAC
GGGTAACGGGAATGCGGGTAACGGGAATGCGGGCAATGGGTTCAATGGGGGTAACGGGAATGGAG
GCAATGGGTTCAATGGAGGCAACGGGAATGGAGGCAATGGGTTCAATGGGGGCAACGGGAATGGG
GGAAACGGGGTCAATGGGGGCAACGGGAATGGAGGCAGCGGGAAT


Right flanking sequence: Indices 2872 -- 3371
TGGTGAAGGCAATGGAGGGGGGTTTGAAGGCAACGGAGGCAACGGAGGCAACGGAGGCAACCAGG
GCAATGGAGGCAATGGCGGTGGGAATGGGGGTAACCAAAACACGAATAACAATCAAGGTGGTGGC
GGGGGCAACGATGGAGACGATGCCGGGCCCGATGGAGATGACAACGAGGGTAATGGAGACAATGC
CGGGCCCAATGGAGACAATACCAAGCGCAATGGAAAGAATACCTCGGGCAATTTCATTAACACTG
TGGGCAATGGAAATAACACTGCGGGCAATGGAAATTATACCGCGGGCAATGGAAATTACACCGCG
GGCAATGGAAATAACACCGCGGGCAATGGGAATAACACCGAGGGCGACGGAGAGGATACCGAGGG
CGACGAAGAGGACACCGAATCCAATGGAGGTGGAGATGCTGGCGGCGGTAACGGTGTTGGCCCGG
ACCAAAATAACGATACAGGTGTGTCTGGGGGCAAATCTGGTACCG



Found at i:2952 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140267958
    Period size: 9  Copynumber: 3.8  Consensus size: 9

       2889 GGGGGTTTGA

                     
       2899 AGGCAACGG
          1 AGGCAACGG

                     
       2908 AGGCAACGG
          1 AGGCAACGG

                     
       2917 AGGCAACGG
          1 AGGCAACGG

                   
       2926 AGGCAAC
          1 AGGCAAC

       2933 CAGGGCAATG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   25  1.00

ACGTcount: A:0.35, C:0.24, G:0.41, T:0.00


Consensus pattern (9 bp):   
AGGCAACGG

Left flanking sequence: Indices 2399 -- 2898
CGGCCGCAGCTGCCGGTGCTGCCGGAGCTGGGGCTGGAGCTGGAGCCGGACTCAGAGCCGGGGGT
AAGCGGTGCTGGTTTCGGCGGTAACCGAGCCGGCTTTGGAGGCAATGGTGCCGGTTTTGGGGGCA
ACAGAGCCGGTTTCGGGGGCAATAAAGCCGGCTTTGGGGGCAACGTGGGAAATGGGGTCAATGGG
GGCAATGGGGGCAATGGGGGCAATGGATTCAATGGAGGCAACGCGTTCAATACGGGTAACGGGAA
TGCGGGTAACGGGAATGCGGGCAATGGGTTCAATGGGGGTAACGGGAATGGAGGCAATGGGTTCA
ATGGAGGCAACGGGAATGGAGGCAATGGGTTCAATGGGGGCAACGGGAATGGGGGAAACGGGGTC
AATGGGGGCAACGGGAATGGAGGCAGCGGGAATGGAGGCAACGGAGGCAACGGAGGCGACACGGG
AAACGGGGGCAACGGAGGTGGTGAAGGCAATGGAGGGGGGTTTGA


Right flanking sequence: Indices 2933 -- 3432
CAGGGCAATGGAGGCAATGGCGGTGGGAATGGGGGTAACCAAAACACGAATAACAATCAAGGTGG
TGGCGGGGGCAACGATGGAGACGATGCCGGGCCCGATGGAGATGACAACGAGGGTAATGGAGACA
ATGCCGGGCCCAATGGAGACAATACCAAGCGCAATGGAAAGAATACCTCGGGCAATTTCATTAAC
ACTGTGGGCAATGGAAATAACACTGCGGGCAATGGAAATTATACCGCGGGCAATGGAAATTACAC
CGCGGGCAATGGAAATAACACCGCGGGCAATGGGAATAACACCGAGGGCGACGGAGAGGATACCG
AGGGCGACGAAGAGGACACCGAATCCAATGGAGGTGGAGATGCTGGCGGCGGTAACGGTGTTGGC
CCGGACCAAAATAACGATACAGGTGTGTCTGGGGGCAAATCTGGTACCGGAGGGAACCAATGTGG
CAACGGGAGCAATAGAGGAAATACCTCGGTCAATGTAATCAATAT



Found at i:3160 original size:21 final size:21

*************Found a new SSR********************
 Sequences: ctg1113140267961
    Period size: 9  Copynumber: 3.2  Consensus size: 9

      35206 AATCTCGCAA

                     
      35216 CCTGGCTCT
          1 CCTGGCTCT

                     
      35225 CCTGGCTCT
          1 CCTGGCTCT

                     
      35234 CCTGGCTCT
          1 CCTGGCTCT

              
      35243 CC
          1 CC

      35245 CAAACGTATT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.00, C:0.48, G:0.21, T:0.31


Consensus pattern (9 bp):   
CCTGGCTCT

Left flanking sequence: Indices 34716 -- 35215
CCAGCCAATGTACTGGTTCCAGAAAGCCTCTCAGTGCATACACTCATAGTACAAGGCCTGACCAC
TCGGTAGGGACCTGCATCGAGCTGTTATACCCATATTTAAGCAATAAAGTAGTTTAACATGAGTC
CAATATCGCAGAATACTGAAAGCAGGTGCTGGGCGGATCACGATTGCCCAGAAAAAAGCTTGTTT
GGTATATTAGCCACAACTCACCAGCCACTCCTCCGTTTTCAGTCGTTAAACATGCACTGGGTAGC
CCTAAAGCAGAGCTTTCCAATGATAGCATTTGCAGCTCGTAATGTATAGGTTTGGTGGACCCTGT
TTGAGTATTGCCGTTTTAGTGGGTAGTTTTGTCCCGTGGTGCATATAGGCACCATTCATACGGGA
ACCACCCAACAGAAATAGAAATCCAAGCCCATAGTGCACCCTGAACACACTAAAAAGGTGGAGAG
TGATATATTAGCATGTATGCATCTGTAATTCTGAAAATCTCGCAA


Right flanking sequence: Indices 35245 -- 35744
CAAACGTATTACCCCTTTATGTATGCTATTAAAAAGAAAGGCCTTGCCCGGATTCGAACCGGGGT
TACAAGAATGCTTACGTAAGAAACTCCCAGTTCGAATCCGGGCGAGCTACGATCAGAATCTTGAG
TGATAACCACTACACTACAAAGCCTGTGGCCTAAGTCGCAAATCTGGTTACTAGACTTGTTTTGA
AGACACATGTAGACCGTGTGCGTATGTGTGGCCTAGCTGTGGGCTGCAGGGGGGCCGGGGAATCC
CAGACGTGTGGCGAGTATCGAGGATGAAAGCCGAGTAGACCGAACACGGAGAAAGGGCTGGCATG
GGTGGGTGGCAATGTCTGTGCCAAGTACTGCTAGCCCAGACAGCGAGGGTGGGATGCATCATGAA
CGATGTCTAAGAGGGTGCACAGAGCGTGAATACCTCCCGCCCCGCGCCATGTGTGAAGGGCAAGG
AGTGAACAAACAGTTCACGTGATCAGCTGCAGGCGCCTGGCGCCC


Done.

rsol.ctg.fasta.s5968.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267963

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 7859
ACGTcount: A:0.21, C:0.33, G:0.23, T:0.23


Found at i:972 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140267966
    Period size: 9  Copynumber: 2.8  Consensus size: 9

      12261 TGGAAGGCTT

                     
      12271 CCAGAGACA
          1 CCAGAGACA

                     
      12280 CCAGAGACA
          1 CCAGAGACA

                   
      12289 CCAGAGA
          1 CCAGAGA

      12296 GGGGGGACCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.44, C:0.32, G:0.24, T:0.00


Consensus pattern (9 bp):   
CCAGAGACA

Left flanking sequence: Indices 11771 -- 12270
ACGGCACCCGCGCGGTGCCAGGCTTCGATTTCTCCACCACTCGGAAGCGCCCAACTCCGAGTAAT
TTAATGTAATCAGGTCACGTGGCATGTGAAAATCAAGCGTTACAGCCTAAACTGGAATATTCATT
TCGTGTAGGCAACGCTTCTTTCATTATTCCTGGTTAATCTAAGCGCAGGAGTGATGATCATATAA
ACATGGTATGAGTACAGCCTCATGACTCTACATCTGTGTTGGTTTTAATGTTCGATCTGGTGGGA
TGCGGTGGTCCGTACTGTTCGAGCGCCACCCGGTTCAAGCCTGAAAGTAGAACCAAAGAGTGCGG
TTTACCGCTTCGGTTCAAATATAGAAGTGAATAACATCAGAAACGACTCGGACTATAGAAAAACA
GGCTATATGCATATCAATATCGCACAGCTAGAGGACTTATATCCCAAGTATTCGAGAATGGCCGG
CGTACCCAAGGCCATCTGCAAAGATAGGTCTGCTCTGGAAGGCTT


Right flanking sequence: Indices 12296 -- 12465
GGGGGGACCTTCTCTGCAAGGCTCCCAGAGACGAGTCAGGGTCTAGTTCTCAGTAGCTATAGTTC
GTCTGTGTTTGGCCTCATTTGTACATATTATGTTTTCAATTCAACTCAACTTCAATTTCCTAAAT
ATGCTCTCCTGGGGCTATAGCTACTGAATACTAGACCCTG


Done.

rsol.ctg.fasta.s5972.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267967

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 12812
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25


Found at i:9004 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140256890
    Period size: 9  Copynumber: 6.0  Consensus size: 9

        418 CCGCAAGCGG

                 *   
        428 TGCCTTCTA
          1 TGCCTCCTA

                     
        437 TGCCTCCTA
          1 TGCCTCCTA

                     
        446 TGCCTCCTA
          1 TGCCTCCTA

                     
        455 TGCCTCCTA
          1 TGCCTCCTA

                      
        464 TGCCCTCC-A
          1 TG-CCTCCTA

                *    
        473 TGCCCCCTA
          1 TGCCTCCTA

        482 ATCCTCAGTA


Statistics
Matches: 41,  Mismatches: 2, Indels: 4
        0.87            0.04        0.09

Matches are distributed among these distances:
   8    4  0.10
   9   32  0.78
  10    5  0.12

ACGTcount: A:0.11, C:0.46, G:0.11, T:0.31


Consensus pattern (9 bp):   
TGCCTCCTA

Left flanking sequence: Indices 1 -- 427
GAGTTCGTTGGATGTTATTACAAACGCGATTGTCGCGCTTGGACCCGACAAACAGTTGGAGTTGC
TTCAGCAAATGAAGGTGCGTGAATTTTGAAAGTTATGATTACACGTCTAACCTCTCGTCTAGCAA
TTCATTACAACTAACCCGGACGCGGCCCGAGCGGTACTGGTTGCGCATCCACAACTTGCATACGC
GTGTTTCCAAACTATGCTTACGGCCGAAGTCGTAGATCCCGCAGTACTCCAGGTGAGCAAATCAT
CACTGTGATACGACCCACTAAACTCGGATTTTGCTCGCAGAAAATGCTTGCAGGCGGCAGTAACC
AACCTCCTCCCCAGCAACAAGCGCCGCCTCCCGCCCCTCCGGTACCGGCCCCTGCAAATCAGTAC
CAACAAGGATATTATGGCGCACCTCCCCCGCAAGCGG


Right flanking sequence: Indices 482 -- 981
ATCCTCAGTACCCATCCTATCAAACGCCGCCGCCTGCTGGCCCGATGGTTCCTACATTCCAGGGT
GTATCTCCCCAGCAACAGGTAGGATCTCACGCCCCACCAAACAGAAGTAGCGAGGACTAACACCC
CGTAGGCTATGATACAACAAGTTTTGTCCCTTACTCCCGACCAGATTAACGGGCTGCCTCCGAAT
GAACGTGCGGCTATCATGCAATTGGCAAGTCACCGAGCTCCCCGTTTGTTCATTCACACATACTC
ATTCTTGTTGATTGCAGAGAAGTCAATTGGGGGCATGATAGGCTTAGGGATAAGGCTGACACCGG
CATTATCGCCATCATATAGTTCTATAACATTGTATATGTCCCATTGTATGACACCGGCATCCCTG
GGAATTGAACACAATGTTTCTTCTAGACCTATGATAAATTTGATAGCTGGGCCATTCTTATTTCA
TTGAATCACTGAATAAAAAACCACAATACAAACGACACAAACATT



Done.

rsol.ctg.fasta.s5994.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267989

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 20669
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.27


Found at i:12049 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140267989
    Period size: 9  Copynumber: 2.8  Consensus size: 9

      12027 AAGAACTGTG

                     
      12037 GTGGTGAGT
          1 GTGGTGAGT

                     
      12046 GTGGTGAGT
          1 GTGGTGAGT

                   
      12055 GTGGTGA
          1 GTGGTGA

      12062 ATTCTAACCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.12, C:0.00, G:0.56, T:0.32


Consensus pattern (9 bp):   
GTGGTGAGT

Left flanking sequence: Indices 11537 -- 12036
TACCCGTTCGCCGGTCTGCTACCTGCAAGAGTCATGGCCGGCGTGCTATTCCACGGCCTTCTTCC
CGTTCGCCCATATTGCTGTTTGCCACCCAAGCATGAGGCGTGTGACATGCTATGGGAACTTTTCA
AGGATTGCTGGCTCTTCTACCCGGAAATGCGTCCCTCGGCATCTGAAGTGACTGAAAAGGTTCGT
AATGCGTACACCTGTGCCACAATCCCTGATCCCTAATCCCTACTTTTGAAGCTGCTAAACACCTC
TATCGACCCTGCAGACCTGTCACCTGGGGATCACGACGAACGAATCTTTGGCCAATGTGGAATGT
GCCGGGTCCATACGTTATCAAACATGGATCCAAGTGGGTAAACTTGAGAGCCCGGGATATCATGT
GTTGTCTATGATTTCTTCAAGTGTATCAATTTCTGCTACGATGTTCACTCCTGGCTCATATGCGC
GCATAAGATGCCTAAAGCTTCGTTTCAAGAGGCGAAAGAACTGTG


Right flanking sequence: Indices 12062 -- 12561
ATTCTAACCATTTTTGGTGCGGATACACGGGTTTTAGTCGATAATCGTGTTTCTACCGGGCAAGT
CTGAACCGTGCTGTAATGTTGCTCTCGGCAATTGACAAATGATAGTAGTTATTTCTCCTCCGAGC
AATCAAACGGGCTCAAAATTTCGTTGGGAACCCAAACAGCTCGTCAGCCATATGGAGCCAGGGAT
CATTCTTTCAATATTAATATTTTTAATGTCTCGGGTACTCTGCATACATGCCGACCCCGGGCATC
ACTTATCATCTCGATCAAGATATCTCGACAATGATCTTCCCCATTGTTTTATTCGCCTCCATCTC
CTTGTGCGCTTCGGCTACCTCGGTCCATTTATAGGTCTATCCACAACGAGAGTTAAAACGGCGAG
CTTGTTCATAGATATTCCACGTACCTTGTGAATATATACTTTCAGCTCCTCACTTTGGAAATGCG
AACCGCATTCGTCCCAAAAGCGCTTGACGAGAGCAGCTTGGTATT


Done.

rsol.ctg.fasta.s5995.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140267990

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 5533
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27


Found at i:5283 original size:121 final size:121

*************Found a new SSR********************
 Sequences: ctg1113140268001
    Period size: 9  Copynumber: 6.6  Consensus size: 9

      14372 CGGAGGCGAG

                     
      14382 GAGGAGGAA
          1 GAGGAGGAA

                     
      14391 GAGGAGG-A
          1 GAGGAGGAA

                     
      14399 -AGG-GGAA
          1 GAGGAGGAA

                     
      14406 GAGGAGG-A
          1 GAGGAGGAA

                     
      14414 -AGG-GGAA
          1 GAGGAGGAA

                     
      14421 GAGGAGGAA
          1 GAGGAGGAA

                 
      14430 GAGGA
          1 GAGGA

      14435 AAGTAATTCT


Statistics
Matches: 38,  Mismatches: 0, Indels: 12
        0.76            0.00        0.24

Matches are distributed among these distances:
   6    4  0.11
   7    8  0.21
   8    8  0.21
   9   18  0.47

ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00


Consensus pattern (9 bp):   
GAGGAGGAA

Left flanking sequence: Indices 13882 -- 14381
AGGATATCATGTATCTCGCAAGTGCTCGTGAGTTCATAATATGACTCACGTGGGTGCAGGAAAAG
GGGGGGAGTGGCTCGTGGTGCTCCGACCCTCTTGTAAACTCCGGAGCGATTCCAAAATATAGAGC
TCTCCCTAATACACCTAGATGTGCCAAGCCCTCGCAAAGCCAATGTCAGTTAGGGGCCGCTGGAG
GTTTGGTTCCAATCAAGACACTCAGGGGTAAGGGCGATAAACAATACGCGCCCCTCTCATCGCCT
CTCTGCCAACCTACTACCATATACCCGACCTCACTCCCTTATATGCCGAATTTTAAGCCATACTC
CAATCCCGAAGGCAAGGGACAGCGTATCGATTGGGTGAATCGCAAGCCTCGCTCTCGTATTGGAC
AGTGGATTGACGACACGATCGAAAACAGCGTCGGCCCCAGCCGTCAGTATGATTATGCACCGGGC
AGACATTGGGATACGAGTTACTTGAATAGCGAAGACGGAGGCGAG


Right flanking sequence: Indices 14435 -- 14582
AAGTAATTCTAGCTCTGGCTCGAAGCCGAGGAATGATCCCCTCAATCCCAACCACGGTCAGCGCT
TTCCAACGCCAGTAATACATACAGAACTGACCGATAGTGTTGTTAGTATAAACAGAACGATACCT
ATGTACTGAACAACTACA



Found at i:14405 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140268030
    Period size: 9  Copynumber: 3.1  Consensus size: 9

       8116 TCCCGGAGGA

                     
       8126 TGGCGAATG
          1 TGGCGAATG

                     
       8135 TGGCGAATG
          1 TGGCGAATG

                     
       8144 TGGCGAATG
          1 TGGCGAATG

             
       8153 T
          1 T

       8154 CAAGGAGAGC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.21, C:0.11, G:0.43, T:0.25


Consensus pattern (9 bp):   
TGGCGAATG

Left flanking sequence: Indices 7626 -- 8125
CAACTCGGCCAGCGAGCTCCTCCTCTTTAATCCTATTATGAATGGGTTATTTAACGAGGGAACTA
GTGGATTCATGTGCTAGCAAAGAAACATACACAGGCAGCCGCGAGAGTTGGTCCATCACAACTAC
GAACCTCGACTCGTAAAATGCGCGAGAAACAATCTGCACAAGCGCCTGGAGGGAGCGGGTTGTTT
CGTTTGATTGCACAGGCATCGTTGCAGCCGTTTACCCTACGAATGGTGGTGGTTCAGAAACAGTG
TGTGTCCTTGTCACGTGGCCACTGAACTCGATTTGTAGATCACTGTGGCTGTCCCAGTCAGGAAC
TCCAATTTCCAAGCTCTGGCAGTGCCTCCACATTCGGAGTCCATCGCGTTGAAGGCACTTGGAGG
TTTGGACAGTTGTTCGCTAGGTTGTCTCCTTAAAAGAGATTGCTATTACTCGAGGGTGCAGGGCC
AGATACAAGGGCTGAAATAGCTCTCTGAAACGAATTCCCGGAGGA


Right flanking sequence: Indices 8154 -- 8653
CAAGGAGAGCACAAGGGAGGAGGATGCATTGCAATTGGCAGATGAGGACATGGTTAGGAAATTAA
ACCACGCTCAGCCGGCCCTATCGCGAGTCATACCTAAATGTATTCTATAATCTCTGCTTTTAACC
TTATTGATCTGCTGGATCATTCGAACTGTCGGAACTCAACCTAAGGTTAGACGTTTGCTGGGCGA
CGCGCCTCTTGCTTTACCGCAAGGCGCGAACTTTGGATATTACTTCGCCAGGAATGGAAGTAATA
CGTAGCGCTACAACTACTTTGAAACGACTGCCAGTCGAATTTTACTAAAGACATCGTTGTGGTCT
ATTCGACAATGTTTTAGTCTCCCGAACCTCAACGTTTCGTCATATTTCCTCACCTCTTCTCAATA
GTTTTACTCATCCTTCAACTCCGAGAACATGTTATTGCGATCTATTAGGACAGTGCGACCACGCA
CGCTGCACATTACGCAAAAGGCTGGGTGGTTCCCAACCACTATCA



Found at i:42231 original size:2 final size:2

*************Found a new SSR********************
 Sequences: ctg1113140268055
    Period size: 9  Copynumber: 4.4  Consensus size: 9

       6021 GCCTGTTGAG

                     
       6031 GCTGTTGCT
          1 GCTGTTGCT

                     
       6040 GCTGTTGCT
          1 GCTGTTGCT

                     
       6049 GCTGTTGCT
          1 GCTGTTGCT

                *    
       6058 GCTGCTGCT
          1 GCTGTTGCT

                
       6067 GCTG
          1 GCTG

       6071 CTGTCTATAC


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   9   30  1.00

ACGTcount: A:0.00, C:0.25, G:0.35, T:0.40


Consensus pattern (9 bp):   
GCTGTTGCT

Left flanking sequence: Indices 5531 -- 6030
CGTTTTTGTGCAATGCACTCCTGATCCATATGGCAGTACAGTGGTCATGATACGTGCCACCCACA
TCATGAGACCTCGACACGATCCAAAAATGACAAGAAAACCCCCCGAAAGATATATATAATATGTA
AACCATCACACACAAGAAAACATAATAGAAACACACTCAGATCACAATCACACACAATCACAACA
AAGAGAGAGAGAGAGAGAGAGAGTCATAACGTCCGTGAAGAGAAACAAGGCCATGTGGACTGGGA
GTTTTGAAAAAAAGGCGCAAGGCAAGGCAAGACAAGGTTGTCCTCGAGGGGGTGGGGTTAGAGCT
CGCGATGAGCAAGGGCAAGGTTTCCTCCTCTTTGAGGGGTGTCCTCCCCGAAAAGAGCAAGCAAG
ATAACCCCCGCGAAAACAACCACCAATCACGGTTTATCGGTTCCCCTGCTGAGCACCCCCCGCAA
CCCACGGCATCTCAAACCCCGCATTCCACTGGCCTGCCTGTTGAG


Right flanking sequence: Indices 6071 -- 6570
CTGTCTATACCACTCTTGTCCAGGCTCAGTCGTCGTGGGGCCGTCCTTGTATTCTCCACCGCCCA
TACTATAATCGTATCCTCCATAATATCCACCGTTGTAATAGGGCTCGTTGTATTGGTATTCGGTG
TACGGTTGGGGTGGGTCGGGGAGGAGGTGCGGAAGGGGTTGTTGGAGTGTTGTCTGGGGTTGGAG
CGTGTTCTGAGCGAGGCCGTTGGAAGGTGCAAGTGTGCCCGGTTGTATCCCGGTGGGTGCAGGCA
TTCCACCCGCTGAAGGAGGTTGCATTCCATTCGACGGGGGCTGCATCCCATTCGACGAAGTCATA
CCATTCGAAGGCATTCCATTCGACGGGATCCCATTCGACGGCAACCCATTCCCAGTCTGCATCCC
TCCGTTTTGCATCCCCGCACCGGGTGGGGACATCCCACTCCCGCTCGTACTCGTCACGGGGGAAT
TCCCCACACTGCGCTCGCTCCCCGCCCGACTCTTGACCACCGTGG



Found at i:6414 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140268094
    Period size: 9  Copynumber: 3.9  Consensus size: 9

      21628 TTTCTTTTTG

                     
      21638 CCCTT-TTT
          1 CCCTTCTTT

                      
      21646 GCCCTTCTTT
          1 -CCCTTCTTT

                     
      21656 CCCTTCTTT
          1 CCCTTCTTT

                    
      21665 CCCTTCTT
          1 CCCTTCTT

      21673 GTCATAACCA


Statistics
Matches: 25,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   9   22  0.88
  10    3  0.12

ACGTcount: A:0.00, C:0.43, G:0.03, T:0.54


Consensus pattern (9 bp):   
CCCTTCTTT

Left flanking sequence: Indices 21138 -- 21637
GACAGCTGAAAGTGTTAGCGGCGGGCCAGAATTAAACAAGAATGACGCCTTGGAGCCGGCACCGC
GTTTAGGGCTGTTTTCTAACGCTGCAGTTTGACGTTGGAGAGCACGAAGGCGCTTGTTTTCGGCT
TTCTTTTGACGATCGAGTTCCCATTGAGCCTGGAGTTCCGGCGGTACGTTCTTCTTACGCGAGGC
AGCTGTGTTTATGATATCAATCAGTGTACACTTCTAGATTTCGAGGCCAACACTCACGGCTTAAT
GGGGGACTAATCATTCCCCGCTTGCGCTCACGTTTCAAGAGCATATTCTCAGCCAAGTGATCCTA
CAAACGATGAGCATAATTCGGGGTCTAGTGAATACGACGCACCTCGAGTTCCGCAAAGAACTCCT
CATCCATATCCGCTTTGCTAAACCCACTCGTTGGAAGCTGGAAGTCATCGTCGTCGTCGGAGGAG
TCATCGTCCATACGGCCCTTTCCTTTCCCCTTTCCTTTCTTTTTG


Right flanking sequence: Indices 21673 -- 22172
GTCATAACCAGGGGTGATTTCTCTCAAGCGGTTCAAGCGAGTTTGGAAGCTGCCTTCGATGTCGT
CCGAATCTTCTGAATCATCGTCGCCGATCAAATGCGCAATGATCTCATCATCGGACTCGACAAAC
TCGCCCTCGGCCTCTGCTAATGCCTTGTTCAAGTCGCCCACCTCTTCGTCCTCACTGTCGTCCTC
ACTGTCGACGTCATCGAGTTCATCATCTTCGTCTTCTTGACGCAACGTTTCCTTGTCCTTGATAT
CATCCATAGTAACCCATTCGCGAGCTTCAGCATTCTTCAAGAACTTGAGCATGTCAGCCGATGAT
ATATCCTCAACCATCCCGGGATCCTCGTCGCTGTCGTCATCCTTGTCACTGGCCGACTGAACTTG
GCCCTTGCGTTTCGGCGGACCTGAGTCGCCCCAGTCCAAATCCGAGTCACCTTCCCGAGGTACGC
GTGGTTTACCCGATAATTTATAGCCGAGACCACGATGGCCATGGT



Found at i:21865 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140268102
    Period size: 9  Copynumber: 3.3  Consensus size: 9

       8854 TCCTTCAGAG

                     
       8864 GTTGCAGCA
          1 GTTGCAGCA

                     
       8873 GTTGCAGCA
          1 GTTGCAGCA

                     
       8882 GTTGCAGCA
          1 GTTGCAGCA

               
       8891 GTT
          1 GTT

       8894 CAATGCCAAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.20, C:0.20, G:0.33, T:0.27


Consensus pattern (9 bp):   
GTTGCAGCA

Left flanking sequence: Indices 8364 -- 8863
AACCAACGCGAAACTGATTCTTAAAGTGCCAGCATCAGCTCCAACGGTGAGAAGAACATATGGCA
GCGTCAGTCGCTCGCATGCACCAAAGGCTTCAGGTGCCTGGTACAAATTAGTATGGTGTCCTAGT
CGTGCGCCGAGCCCCATTCCTGGAACATTAGTCTATTCTCATAACACTATTCTCAATAACACCAG
CTCGAGTTACAGTTGAGCATACCAAAGAAATCAAGCACACCAAGTTAGAGTTCAAAGTCGGAGCC
CCAGTGCAAGAGTCAGGTCGGTCCGAGCAGATGCAGTCAAAGAAACTTTGATGGCGAAATCCAGA
GCAAAGAGGTCCAGTAACTCAATAAATCGAATATATTCACAACATAACGCGGACGATTGGAGGAG
CAAGATCGAGTCGATTTTCTAGTCGGGCGAGGAATGAATGAACTCGGGGAGAAAGTAAACCCAGA
TGAAATTGTACCATACCGATCAAAACTTTTCTCACTCCTTCAGAG


Right flanking sequence: Indices 8894 -- 9393
CAATGCCAAATGCCTAAACTATTCCTTTCCTGGTAGTGAGAACGCACGTATTGAACCGAACCGAA
TAGAATAATTGGCAAATATCACAGTACTCGGCGCAATCTGACGTGAATACATACATCTTAATCTG
GCACGTGTATCAAATGGGTGTCGGGTGTGGACGGGATCAAGAGTCGGGAGGCGCTCAGGACCCTT
GCGTCAACCAGCCACTCATATATGAGGGACAGACCCTGTCGATCCCCCCGCTCTATATATTACTT
GTATCCCCCAGCGTAGGTCACCAGAATAAAAGTGAGTAATTTCCGGTGTTTTTTCATATATAAAA
GAAAATACTAATTATGGGAGCCATTTTAAAGCGCTGCCTCACTGGCGCTGACTCGCCGAACTATA
GATGTAGCTCGAGTTATTCTAAATCGGAGTGGCCAAGTCTGCTACCAGACTCTCAACTGCGGACG
GATGCTGGCCAATGACAAAGGCCCGATGTTCGCCGCGTGTGTGTT



Found at i:21214 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140268147
    Period size: 9  Copynumber: 5.9  Consensus size: 9

       5368 TCCTGGAGGA

                 *   
       5378 ATGGGTGGC
          1 ATGGGCGGC

                     
       5387 ATGGGCGGC
          1 ATGGGCGGC

                     
       5396 ATGGGCGGC
          1 ATGGGCGGC

                    *
       5405 ATGGGCGGT
          1 ATGGGCGGC

                 *  *
       5414 ATGGGTGGA
          1 ATGGGCGGC

                    
       5423 ATGGGCGG
          1 ATGGGCGG

       5431 TTTCTAAACA


Statistics
Matches: 39,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   9   39  1.00

ACGTcount: A:0.13, C:0.13, G:0.57, T:0.17


Consensus pattern (9 bp):   
ATGGGCGGC

Left flanking sequence: Indices 4878 -- 5377
GGGAAAAGAAAGACCGATACGACGATGCGCTCAACGCCACTCGGGCCGCAGTCGAAGAAGGCATC
GTCCCAGGCGGAGGAGTCGCGCTCCTCAAAGCGTCCTTGGCACTCACCCCCGAATCGGTTCCGAC
GGCAAACTTTGACCAGTCGTTGGGCGTGAGCGCGATTAAAAACGCGTTGCAGCGGCCGGCGAGGA
CGATTGTCGAGAATGCGGGCGAAGAGGGGAGTGTGATCGTTGGGCAGATTTTGGAACGGTACGGA
GACAAGTTTACGTGGGGGTATGATGCTGCCCAGGGTGAATTCACGGATATGATCGCGAGAGGGAT
TGTCGATCCGCTCAAGGTGGTCCGGACTGCGTTGGTGGATGCTAGGTGAGCCCGTTCTTATGTTT
CCTCGATGATATGCTAAACTGTGGTAGTGGTGTGGCGAGCTTGTTGACGACGTCCGAGGCGTGCA
TCGTCGAAGCGCCGGAAGAAAAAGCTCCTGCTGGCTCCTGGAGGA


Right flanking sequence: Indices 5431 -- 5930
TTTCTAAACATTCGATCTTTTGTTTATTACTTGGATTCGGTTGGAATTTGTAGCTTGTATGCGTT
GAAAATGAACATCCCCGCTCATGAACTGTGAATCTCTCGAGGGTGGTGCTTCGATATCGGAATGG
CATTCAATTTCCAGGAGCTATAAATATTCGAGACAATAGAGACCTTAGGCAAGGGTAACTTTTGA
AATTCACTGGAAACGAGTTAATACATTATTTGACCACGACTATGCTTGCAATTCCGCCAGGGGGT
TAACATGGTGGTCCACCAATTTTCGAAATGGGTCTAGGTGATTTGTGGGAGGAATTGTGCTCGGA
GTGTCCAGTAATATTTCAAAATTTACCCTTGCCTAAGGTCTCTAATGCGAGCTCAAATCTCTCAG
AGCACAACATAAATAAACCAAGGTACCCGCAACCAGAATAGACCAGGGAAAGTGAGACAGGATAG
CCTTATATCGTATTTTACTCTGTGACCAGCTGTACTTGGGTGAGA



Found at i:5405 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140268157
    Period size: 9  Copynumber: 3.1  Consensus size: 9

      20957 CGCGACCCGT

                     
      20967 CTGATTTAC
          1 CTGATTTAC

                     
      20976 CTGATTTAC
          1 CTGATTTAC

                     
      20985 CTGATTTAC
          1 CTGATTTAC

             
      20994 C
          1 C

      20995 CTCCGTATTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43


Consensus pattern (9 bp):   
CTGATTTAC

Left flanking sequence: Indices 20467 -- 20966
TACACCATATGTGATTATAACCCTTTCACTACAGGTATAGGGGCCTCCAGACTATGCACTAGCTT
GCCGCGTGTACGATCATAAACAAGTCAAGGTACCGATGCGACGTGAAACATTCTCTTGAGGTATT
TACGCGTCCGGTAGTCCAGTTACAGTCGTAATGAAGGGTGTAATTACTACTCCTATTGTAAAAGT
CTTTCAAGAGAAAGTTAAAGTCGGAAGGGGAGACTAGAAGGTTCGCTACGAGGTTGGCGTTTGGA
GAACCGGAACCAATTTCAATCAGGCACCGGGCATTTACGAGACGGTCACGGTTCTCTTGAAATTC
CAATTTTGCAAAAATGTTCATCCTGCAGTCGAATTCAATCGACGCCGTGCCTATGCTGAAACCCA
AGTCACAATACCTTATACTGAGTCCAATATCAAGCGATGTATATTACTTCAAATGTAATTCATTC
AGAGGTGAGACGTACATGCTTATGCAAAACCCGGACGCGACCCGT


Right flanking sequence: Indices 20995 -- 21346
CTCCGTATTACAGTCAACTCTCTTGACTCGCAAGTTAATGGTGGAAGTTTCACGCTAAAATTGAA
TTAACCCCGCACCTTCTTTAGGTCTAAGTAATTGAGTCGTTAAGGTTTGATTGCGAGTATGGAGG
TTGCGAGTCAAGAGAGTCGGCTGTATTCATTTCTTCCCTATGCTTTAAAAAGTTTGCCCAAACCT
CCTCAAAATCATACCCAATAGCAAGCTTCCACTTCCGGTAGAACTCCATCTCTTCCTCGTCTTCT
GCATCTGGTAAATAGACGACCTCACCCATATGCTTTCTGGCTAGAACTTTGGCCAGTCTCTGCGG
TGAAATAGCCCCGTTCTCCTGTATATT


Done.

rsol.ctg.fasta.s6163.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268158

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 37690
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25


Found at i:31 original size:20 final size:20

*************Found a new SSR********************
 Sequences: ctg1113140268161
    Period size: 9  Copynumber: 3.2  Consensus size: 9

        299 TAGTCAAGGT

                     
        309 TTCAATTCA
          1 TTCAATTCA

                      
        318 TTCAATTCAA
          1 TTCAATTC-A

                     
        328 TTCAATTCA
          1 TTCAATTCA

              
        337 TT
          1 TT

        339 TCATTTCACT


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
   9   11  0.55
  10    9  0.45

ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47


Consensus pattern (9 bp):   
TTCAATTCA

Left flanking sequence: Indices 1 -- 308
ATGTTAGACTTACATACCGGTTGGCTGTATACAGACATTGCGAGGAGTGACATACCATTGGACGT
CGACTCGGGCTAAAAGCGCATACAAGACGCAACGCTCCAGTGAATGATATCAACGCGGACGAGTG
GATGAGTGTATCTGCACATAAGAGATAGCGGTTCTCAGATCACGTACCGGTCAATAAATACGTCG
AATAAAGTCAGAGCTCCATATGCTGCGCAGTGAACGGTTGATCCTCATCAATGAGTAGATTTATC
CTACTTTTAAGTACGAGGCATGGGCAAAATACAATCCCTAGTCAAGGT


Right flanking sequence: Indices 339 -- 838
TCATTTCACTACAGACGGTAGCCAGAATCAAACACTTTCCGAGTCTAATCAATGAAACCAAGAGA
TTAGCGGCCAGCAAAGAAAGAGGGGTTAATTGAAGCACTCATACCTTCGTTTCGCCTACTGTTTG
GTTTGGAGCCGGTTCATATCAATGCGCTCGATGAGTAATTTCCCGTTGCGTATCTCATTCTCCCA
GAGGGGGAACTGTGCGCATGCCAGAAGAACGATGCAATTGCCTTGCTCAACGTGTCTAAAGAGGG
GATGGTCCCATGTGAACTTCGCCCCGTCCAACCATTGGAACCCCGGATTAAGTCGATTTTCGTGG
GAGGTCCAGGTTAAAGGCTTGCCCTCATACTGTTTAATATCGCCTGGCTTCACCTCTTGGCCTTC
GGCTGGGCGACTTGTGAAGATCGCAATCTCAAACCAGCTCCATTGGCCCTTTTCGGGGTTCGAAG
CCCAGCCTTGGTCACGGGACTCAGTTTGAGCCTGAATGGAGAGAT



Found at i:325 original size:5 final size:5

*************Found a new SSR********************
 Sequences: ctg1113140268173
    Period size: 9  Copynumber: 3.1  Consensus size: 9

       4692 CACTGCTACT

                     
       4702 ATCCTTGCC
          1 ATCCTTGCC

                     
       4711 ATCCTTGCC
          1 ATCCTTGCC

                     
       4720 ATCCTTGCC
          1 ATCCTTGCC

             
       4729 A
          1 A

       4730 CCCTGGTCAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.14, C:0.43, G:0.11, T:0.32


Consensus pattern (9 bp):   
ATCCTTGCC

Left flanking sequence: Indices 4202 -- 4701
AGCCGAGCTTCAAGTTGGTTAGCGTATACGCAAGCCCGACATGACCAAATAATAGCCAAGATATC
AATGATGGATGTATGCGCATGTATTGAATTAAGAGAATCATATATTGTAACATATTCCTGGAGCG
CTATGACATCGATGTCCCATATTATGTCTCAATAAATAAACTACCGAATAACTCTTATCAGTACG
CATTCTCAGTATAAGTATGACGCGTACTAACCCTTGGTCCGAGTCCTACAGAGGGGGATACTAAC
GGCCAGTAACTTGCCAGTAGACAACTAATCGCTGTCGCTGTCACTATCGCTGCCACTGCCGTTCT
TGTCACCATTGCCATGTTGGCCGGTGGCTCCGTGCTGTTTAGCCTGGGGGTTGCCCGAGCCGCTG
GTGGTGGCCAACCGGGCGGGTTTGGCCCTGCTATTCCAGAATGCCCGCTTCTTGAGTACATCGCT
GGTCGGGAATTTGCCTTCGTCATCGCTGTCACTGTCACTGCTACT


Right flanking sequence: Indices 4730 -- 5229
CCCTGGTCACTGTTCGTCCCGTTTTGTTGAGCCTGGACACTGCTCGTGCCGTTGGTTGCGGCCAA
CCCGGACCCTTCGCTCTTGTCACTGCTGCTATCCTTGCCACCCTGGCCATCCTTGCCACCCTGTT
CACTGTTCGTTCCGTTTTGTTGAGCCTGGACACTACTCGTGCCGTTGGTTGCGGCCAACCCGGAC
CCTTCGACCCTGCGAAGCAAACCTGGCTTCTTGTTTTTGTCGCCGTTCGTGACTTTGACGTCATC
GTCGCTGCTGCTATCATTGTCGCTGTCGCTGTCACTGTCACTGTCGCTGCCACTGTCATCCTTAC
GACCATCGCCACGCTTGTCGCCCTGGTTGTTGGTGGCTCCGCTCTGTTTGGTTTGGAGGTTACCC
GCGCCGCTGGTTGTGGCCAACGGGGAGGCTTCAGCCCTGCGAACCAAGACTGCTCGCTTCTTGGG
TTTGGCACCGGGCTTGACTTTGTCGTCGTCGCTGCTGCTACCGCT



Found at i:4908 original size:123 final size:123

*************Found a new SSR********************
 Sequences: ctg1113140268189
    Period size: 9  Copynumber: 2.9  Consensus size: 9

      70732 TTCGTCTGGA

                     
      70742 TCGTCTTCT
          1 TCGTCTTCT

                     
      70751 TCGTCTTCT
          1 TCGTCTTCT

                    
      70760 TCGTCTTC
          1 TCGTCTTC

      70768 GTCTTGACCC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.00, C:0.35, G:0.12, T:0.54


Consensus pattern (9 bp):   
TCGTCTTCT

Left flanking sequence: Indices 70242 -- 70741
GCTCCATTTCGTCGGCAGTCGTGTCGCCGTCCATGTCGGAGTCTTCTTCGTACTCGGTCGCGTCC
GAGTCGAGATCCATCTCGAGTCCGTCGACGGCCTCGAGCGCTTCCTTGGTGTAGTCGACAGCACT
AAACACATCAAGCTCGGGCGAAGCAGTCTCTCGACCGGGTGTACGTTTCTCCTCGGCCAGTTGAG
CACGGGCGCGTTGTTCAAATTCTTGGTCGAGGTCGGTCGCATTGAGTACACCGCCAAGGTTTAGC
TCGATTCCAAAGTCGTCCATGACGACCATAGGCATGCCCATTCCCGAAAGGAACCCGGCAGAAGC
CGCTTCAGCGAGGTCGGCAGTCGATGAGACGGTTTCGCTGTCGTCGTCGTCGTCCTGGTCGGCAG
AAAACGAGATGGACGAATCGGACAAATTCGCAAAGAACAAATCTTCATCCGAGTCGTCGCTCGAC
CACGCTGCGGCCTGTTCTTCCCCGTCTGCGTCCCCTTCGTCTGGA


Right flanking sequence: Indices 70768 -- 71267
GTCTTGACCCGCGCCCGATTCGGAATTCGTCTCATCGTCAATCGACTCTTCGCCCTCGACACTTT
TTCGTCGCGGCTTGATCTGCCATTGCTGCCCGCCCGCTCCTCCGCCCATGTGGTTCTTGTGACTG
GCGTTCATAATCAACTCCTTGAACTTTCGCTTTCTCTCCTTCTTCTCCTCGGCCACGATCATCAT
CTCCTCTTCTTCCTCCACCTCGCTGTCCCCACTCATCACCAGTCCAGTCGTCTCCGAATCCGAGC
TGGAACTACTGTGCTCCTCGCCAGAATCCCCAAACACGCTCGCGCTCACAAACGTCGGGAAACGA
GTCTCCTTGTGCACCGATCCAGAGGCGCGGAACGGAACGAAATCATCCTCGTCAAAGTCATCGAA
ATCGCTCAGACTCGACTCGCTCGTCGTCTCGCGCACGCGCTTTTTGTGTGGCCGTCCGAGTTTCC
GCTTTTTCGAATTGGCAAGAGTGGGTTTTTTGGGATTACCGGGGG


Done.

rsol.ctg.fasta.s6195.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268190

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 44401
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26


Found at i:6630 original size:230 final size:230

*************Found a new SSR********************
 Sequences: ctg1113140268331
    Period size: 9  Copynumber: 3.7  Consensus size: 9

      22886 TAAGCCCCAT

                     
      22896 AAGCCCAGC
          1 AAGCCCAGC

                     
      22905 AAGCCCAGC
          1 AAGCCCAGC

                  *  
      22914 AAGCCCCGC
          1 AAGCCCAGC

                  
      22923 AAGCCC
          1 AAGCCC

      22929 CAATCGGAGC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   9   23  1.00

ACGTcount: A:0.30, C:0.48, G:0.21, T:0.00


Consensus pattern (9 bp):   
AAGCCCAGC

Left flanking sequence: Indices 22396 -- 22895
TTTGCCAACCCTCCAAGGGGTGGGTCCATGAGCCCTCCACCGATGCCGCTCCCTCCTCAGCGCCG
GGGATCGCAAGGAACCGTCTCGTCTGAGCGACCGGGCAGCCTAAGGGTATCCCCAAGCCCACAAG
TACCGCAAGCCGCAGTGACGTCCCCTTCCGTTCTCTCGCGCAACGCCACGATTGACTCGAATGGT
TCTCCTGGCTCACCGCCAAACAGCCGTCGTGCTGCGAGTCCTTCACCAGCCCGCTCACCGGCCGA
GGAGGCGACCAGGCGAAACATGCCCTTTCCGTCTCCCGTGGAGGGCCAGTCGATCACAGTTGCTT
CAGCGGTGAAACAGCGACCCCGTCCCCGAACCTCGACGAGCGGCTCGGCCACGGCTCCCAACACC
CTCTTGTCTACCTTGACCTCCAAAATCACATTCCCTGGCAGCACAAATTCCAGCTCTAAGGCGGG
CTCCAACCCGGTGTCTCCGGGGCTCGCCAGCCCCATAAGCCCCAT


Right flanking sequence: Indices 22929 -- 23428
CAATCGGAGCGATTCCCTCGCTAGTGCAGTAAGCAACCGGAGCTCGATTTATTCTTTCAGCGACA
TGAGTGATATGGACATGTCCACCTCTGATCTAGACTTCGCGGGTCGCGAAAGCCATCGGATGGTC
CTGAACGGTGCCCGCTTTGACTCCATGAGTTCAGTCACATCAAGTGACGGGGGCATGAGCGGAAA
TGAGGAAGAAAAACGGGAGAAACGTGCCAAGAGGAGGGCCAAGGCTCGTGCGCAGGCGCTCAAAA
AGCAGAAACGTTCAAAGAGGAATTAAGGCGAGGATTGGGTTCACTGGCGGTGCGGGACACCTGTG
TCGAATGGCGTATCAGGAGCCGTGGGTGATAGACATGCGTTCAGGCGATGAAGGAGCCCAAGAAC
ACGCCTTTCGGATTCTCTTGATCGTTTGGATATGAGTAGATTGATGTTTATTTTGATTCGGCGTT
TGTCGAGCTTTGTTTCTTTGCTTTGATCGTTGTTTTCTTTTTTGC


Done.

rsol.ctg.fasta.s6340.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268335

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 4583
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27


Found at i:1073 original size:13 final size:13

*************Found a new SSR********************
 Sequences: ctg1113140268401
    Period size: 9  Copynumber: 8.1  Consensus size: 9

      11270 GTCCCATCGA

                  *  
      11280 CTGTTGTTG
          1 CTGTTGCTG

               *     
      11289 CTGCTGCTG
          1 CTGTTGCTG

                  *  
      11298 CTGTTGATG
          1 CTGTTGCTG

                     
      11307 CTGTTG-T-
          1 CTGTTGCTG

                     
      11314 -TGTTGCTG
          1 CTGTTGCTG

            *     *  
      11322 TTGTTGATG
          1 CTGTTGCTG

               *     
      11331 CTGCTGCTG
          1 CTGTTGCTG

                     
      11340 CTGTTGCTG
          1 CTGTTGCTG

             
      11349 C
          1 C

      11350 GGACCCATCA


Statistics
Matches: 49,  Mismatches: 9, Indels: 6
        0.77            0.14        0.09

Matches are distributed among these distances:
   6    5  0.10
   7    1  0.02
   8    1  0.02
   9   42  0.86

ACGTcount: A:0.03, C:0.19, G:0.33, T:0.46


Consensus pattern (9 bp):   
CTGTTGCTG

Left flanking sequence: Indices 10780 -- 11279
TGGTGACGATACCCAAGCTTCACGCACCCAAGACCCGTCGTATCGTGATTGACTGAATATGAATG
AATGGATTGAAACTGAAGAGAAAGTGTTTTGTGACTTATGTAGCGGTTTATATATGTATTTTTCT
TTTCCCTCGACCTCGATCGTTTGGGTTGTCGTAATGACTTTTGGATGGCGTCATGGGATCAAAAA
TAATCCCGTCGATGGTACTTTATCTAATGAATTTCGTGTCGTTATCAGAGGGACAAGTCGAAACA
GAAAACGATAGATGACAGCAATGCGAATACATATAACACTAAGATAACCAATCGAGAAGAGACTG
AAATAACCCTAAACAAGGCAGGAAGGTGTTTTAAAAGCAGCAGCGGTCACCAGTTCATGATCATA
TTCAGCCGTGGTTGCGGATCTGGATTGCGAGCTCAATGCTAGAACGGGAAGACTAACGAGTGGGA
CTGACCCATCATAGGCCTTCCCTGGCCCTGACCCTGTCCCATCGA


Right flanking sequence: Indices 11350 -- 11849
GGACCCATCATCCCCCCAAGCCCTCCACCTTGCGGCATACCAGGCCCAAACCCAGCCGGACTGGC
CCCACCTTCACCGCCTGCAGGATTGGCGCTCACAATATACCCACGAGGAGCCCGTCCCGGGCGAA
GATGATCATACATCCCACGCGTATACCTCGGCGTACCCGTATCGCCCCACGCGTCGACCACACGC
ACCGACATGCCAGACCCAGGCCTGTCCACCGACGCAGCCGACCCAGGACGCACAATCAACGACGA
CGACGACGAGTCGGACGTGCCTTCGGGAAGCGGTTGGCCGGTATGAATGGCCAACAGCCGTCTGA
GCGTATCGTTTTCTTGTTCGAGGCGACAAATCTCGATTTCGCGTTCGAGGGCCCAGTCGGATCGG
GCGTCTGCTTCGTCGGGGTCGTTGGAATCCGACGCGGGTGTTTCGCCTGCTGGAAGCTTTTCGAG
GAGTTCGAGGGCTTTGGCGTGCTCTGGGTGGGTTGGATCGCATAG


Done.

rsol.ctg.fasta.s6407.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268402

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 47592
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25


Found at i:13162 original size:18 final size:18

*************Found a new SSR********************
 Sequences: ctg1113140268411
    Period size: 9  Copynumber: 3.7  Consensus size: 9

      23866 AGAGGTCCAT

                     
      23876 GAGAGAGGC
          1 GAGAGAGGC

                     
      23885 GAGAGAGGC
          1 GAGAGAGGC

                     
      23894 GAGAGAGGC
          1 GAGAGAGGC

                  
      23903 GAGAGA
          1 GAGAGA

      23909 AATGAAATGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   24  1.00

ACGTcount: A:0.36, C:0.09, G:0.55, T:0.00


Consensus pattern (9 bp):   
GAGAGAGGC

Left flanking sequence: Indices 23376 -- 23875
AATAATCGATAGAGCTGTCGGTGACAGCGTTTAGTCGATTAAGACTAAAAGAACAGATACTACAC
TTGATCTAAGCCAGAAGGCCAGAGTGGTGAGGAAACATGATTGCAGGCAAGTGGGTATTTGTATG
ACTGGGGTCAGTGGTCCGTGCGCGCTGGTCGATGGCTGAGGTTGTGGTCAACGGGTGGAGCTAGC
TGCGCGTGGGCGTAGAAGCCATGCTACATTGTGGGTCCGTTTCACCAGCATAGACAGGGAATGTC
TCTAATCATTCTCGAAAATGAACTATCCTGTTACCCATTTTGACGCATACATCTTCCTTTTTTGC
GCTGAGCGCTTACTAGGAGATTGATGACCTATACACTGAATAACTCGGGCCTCATGCTGGGATCG
ATAAACGCGCGCAGATAGAGATAGATTTCCGAGACCAGATATGAAAAATACAGAACCATTCCAGA
GCGTCTATGCTAACTATCCAATACAGTCTAACGCAAGAGGTCCAT


Right flanking sequence: Indices 23909 -- 24408
AATGAAATGAGACCAGATACATGTACAGCCGAGTATCCCATACAAAGCATGCCAAAACCCAGCAG
AAAGTGACCGTGTGATACAAAGTGATAATAGGCTATTCAAAGCAGATAGATTGAAAATGCGCGCG
TTCGTTTTGTTCATATGTTCTTGATCATAGTTATTGTTAACTTGAATTGAATTCGTGTCGAAGTC
TTGAGGTATTAGGGTATCGATGTTTATATGGAGGTCTTGAGAGTTGTAGGTCGAGAAGTGTTATG
AAGTTTGATTGTTCTACGAACGCAGGGTCAAGAACTTGAAGAAGATCCAAAACTGGCCGTGACTT
CGTACCTTGTTTTTTCAGAGGACGTGTCTGACATCTGTAAGTCCGGGTGTTTGAGCGTAGGCTCA
GTGTCTACCAAGCCCTGGTGAATGGCTGAAGAAAGTCGAGCACAAGAATATACTGACCTTGGACA
ATCTTAGTCGTGATTTAGTCTCGAAGATGTCGAGCGCTATATGGG



Found at i:34198 original size:24 final size:24

*************Found a new SSR********************
 Sequences: ctg1113140268421
    Period size: 9  Copynumber: 4.0  Consensus size: 9

      14856 CATGAGGTGT

                     
      14866 GTTGGTGGC
          1 GTTGGTGGC

                     
      14875 GTTGGTGGC
          1 GTTGGTGGC

                     
      14884 GTTGGTGGC
          1 GTTGGTGGC

                     
      14893 GTTGGTGGC
          1 GTTGGTGGC

      14902 AAGCATGCAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   27  1.00

ACGTcount: A:0.00, C:0.11, G:0.56, T:0.33


Consensus pattern (9 bp):   
GTTGGTGGC

Left flanking sequence: Indices 14366 -- 14865
CAAATCGGCGTCTTGTCCGCACTCGCACCGTCCCGAGGAAAAATCATCGCGCGCGTCGCACCCAG
CGCCATGATCTGTGGATTCTTGTCCACCTTGCAAACAGCAGGGATTGCGGGCATGTTGGTCTAGT
TCGAGTGTATGATATGTGTGTGTGATTATGTATCCAGAGGCGCCCTGTGGGTGGTTGGGTGGAAA
GGGCGCCTACCCCGTTGTCTGTTTATTCGTAACGATTGGATGGGATGCTTGTACGATTGGGTGTT
GTGTAATTTTGATACTGTGTTGTGTGAACTGATGAGTGGTCGAAGCAAGGTTCGAGTGTGGTAGA
ATGTGCGAGTGAGGCGAGTCGAAGAGTGCGAGCATGAGCGAGAGGTGAAGCTTCCGAAACGGGGC
AAGTGAATTCGAGTTCTGTCATAGACGATGGCAAGGTGTGAGCGATAACGGGTTCTGGGTGACTC
GATGTAAAATTGAAGGTTGGTTTATGTAACAGGTCCATGAGGTGT


Right flanking sequence: Indices 14902 -- 15401
AAGCATGCAACTTGTAAATTGTCCGCACGGTTTAGCGACACGAGATATCTCCGAATACTCATAAA
CATTTCAAAGACACACAGTTCCAATCGGCAAGCCAAATAGACTTCCCGAGTGCACGCGTTTTAGA
TTAGAGTTTATCCTGGGTCCGCCACGCGCAGAAAGTTCCAGTTATGATGGCCCACATCGCAAAGG
GGGATAGAAAAGCAATGAAAAGAGGCAACTCATCTTCTACCCTTGAATATGTATCGACTCGGTAG
TCATCAACTCGAGTCATTCGTGTCTTGAATGACACGTGGCCGGCTTGGCGTGCCTGGAGCTTACC
ATCTTGGGGCGCATATATCGAGTTTGATTTGTCAATGGGTGCTAGGTTTGTTAGGTCGAGTGGGT
TCCAGGGATGCTCGTGGTATGGATATGAACCAAGCTCGATGGTTTTCAAGTGATATTACCCACTC
TGCCCACCAAATTCGGCCCTTGTGGTTTGAGATCGACTGCAGATT



Done.

rsol.ctg.fasta.s6427.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268422

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 11267
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26


Found at i:3260 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140268440
    Period size: 9  Copynumber: 3.4  Consensus size: 9

      31579 ATGGGGGAGG

                     
      31589 TGGACTGCA
          1 TGGACTGCA

                     
      31598 TGGACTGCA
          1 TGGACTGCA

                    *
      31607 TGGACTGCG
          1 TGGACTGCA

                
      31616 TGGA
          1 TGGA

      31620 GTCTGGGACG


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.19, C:0.19, G:0.39, T:0.23


Consensus pattern (9 bp):   
TGGACTGCA

Left flanking sequence: Indices 31089 -- 31588
ACACGCGACTCGTCCGTTACATTATTTTACGCTGGAAATACCATAACCTGGGTCAAAGCCTTTCA
AGAAAGTTTGGGATAATGTACATTAGGTTTCTATATTCTCAAGTCCAACCCTGAATAAGAGTAAT
AAATTCCCTTTTAACGTAGCCACTAGGATTCTGCGTGGGCGGGTCACGTGATTATGCATACATCA
TCTCCACCTCGTTCGTGTTCGCTTGCCGACGAGTTCATCAGACAAAAATCTGAGTCAACTGCCCG
TTGCAGTCTGTGGGTGGTCCCATCTCTATCCGATGGTTACTTTCAGTAACTTGGACCCCCGTTGG
TCATATATAGACTCCTGCACAAGCGGAGCCCTTCGGCACTCGATGACCAGCACAGTTCAAATGGA
AAGTGCGCTCTTTGAGCGCGGATACTTCCATTTTGATGGTCCCCCATCCGGCTGTGCAGGTTCTA
TTAGTCAGGTAAATACAGACTCCAACGCGGGAGACATGGGGGAGG


Right flanking sequence: Indices 31620 -- 32119
GTCTGGGACGGCCTTCTGATTCATCTGAGTCACTGGGAAGTGAGGAGATTCAATCGATTTGGTAA
TAATCTTGCCTGGAACCAAACCACTGGACCCCGACCGCCAACCGTCCTGCGCTTCGAGGATTCAT
TATTTAACAGTAGTGTTGTATGTTCACTTTCCCCTAGAGTCTTGACAGCGGCCCTGGAAGCAGAA
ATCACTATTCTCCAGGTGATTTTCCGATTACAGTATATTGCGGCCCTCTATAGCTAGTAACCGCA
AGTGCATGTCACTTAACTTTTCCCTTCCCTTTCCTCTTTTACACTCTTCAAATACTTATCCTCGG
CCGGTGACCCCTTCGGCACAACCACAAACGCAATCACACCCTGCCCAACCACAAGTCCATCATCC
TCACCCTCCTTCCCCTTTGCAGTCCTACAAATATCCGCCAGAGTTTTATTTCGTCCCAATCTGAG
TACTCTCCCTTTTCGCGTCTTGACATACACATTCACTTTAGTCGA


Done.

rsol.ctg.fasta.s6449.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268444

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 42809
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25


Found at i:15277 original size:11 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140268496
    Period size: 9  Copynumber: 4.1  Consensus size: 9

      18126 CATACCCATA

                     
      18136 CCCATTCCG
          1 CCCATTCCG

                     
      18145 CCCATTCCG
          1 CCCATTCCG

                    *
      18154 CCCATTCCT
          1 CCCATTCCG

                     
      18163 CCCATTCCG
          1 CCCATTCCG

             
      18172 C
          1 C

      18173 TAAACTGAGG


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   9   26  1.00

ACGTcount: A:0.11, C:0.57, G:0.08, T:0.24


Consensus pattern (9 bp):   
CCCATTCCG

Left flanking sequence: Indices 17636 -- 18135
CGCGTGCACTCCTAAAAACGCAATAAACGGTCAATAAACGTCGGACGCTGAAAGAACAATGCACT
TACTTTTTAGTCACCGAGAACAAGTCCTGGCTCGCCAAGTAATGTTTCAATACGGTCAAGAGCTC
TTCGTCGGTCGGGTTCGTGCTCAGGCTCGGGCCGGCACCAAGCGGATTCACAGAGGTAGCCATGG
AGAACGTGGACATTGGGCGTCCGCCCGTTCCTGTTCCAGTTCCACCGCCTAGACCGAGCCCCGTG
TTACCCGTCTGCTGCGCCTCGAGACCGCCTCCAAACGCGTTGAGATTGGTCATGACACTGTTTCG
AGGAGCTCCGCCGCCCATGGTGCTTGCCGCGTACGGGTTATTGACCATACCCATAGAGTTCATGG
AACCCATCATGTAGGGGTTCATCCCCATCATTCCCATGTGCATGCTACCTGCACCGGCATGGCCA
CCATAATCACTGCCCGCCTGCGAGCCCATCCACGGCATACCCATA


Right flanking sequence: Indices 18173 -- 18672
TAAACTGAGGCATGAGGAACTGTTGTTGGAGATTAGGGTTGGAACCTTGCGAACGAAGGCCGTGC
CCGTGGCCAGATTGGCTACCGTAGTTGCGTATGCTACCTGCACCGGTCATCATATTGGTATCCCG
ATAATAATCACCGCTCTGAGACCCGGCGAGGTACGATGCGGCGACGCCTGTTTCCTGAGCACGTC
GGCGTGCATAGTCTTGCGCAGACATGGATTTTGCTTGCGTGTAGCCAGTGTGTTTCGATTCCTCG
GATTTGCGCGACGCAGTCTCCCATGCTTCCGCTTCGTACTCTGTGTTGCGAAAAGGCGTGGAGGG
CGATGAAAGATCGACATTTAGCGCTAAAGCGAACCGAACACGACGATTGGCAACTCACCGCTAAA
CTTTTTCAACGGAATCATGCTCTCATCAAAGCCTTCGTCTTCAGGCATAACGACCACCTTTTTGC
CTCCCTCATTTTGGATAAGACGAGTATTACCCCAGGAGAAATCGT



Done.

rsol.ctg.fasta.s650.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140257009

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 2417
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26


Found at i:274 original size:135 final size:134

*************Found a new SSR********************
 Sequences: ctg1113140268501
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       6105 CTTTCTCGCC

                     
       6115 TTTTCCCTA
          1 TTTTCCCTA

                     
       6124 TTTTCCCTA
          1 TTTTCCCTA

                    
       6133 TTTTCCCT
          1 TTTTCCCT

       6141 CTACCGATGG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.08, C:0.35, G:0.00, T:0.58


Consensus pattern (9 bp):   
TTTTCCCTA

Left flanking sequence: Indices 5615 -- 6114
CTATATCGATGTCATCAGGTGAAGATGCTCACGCGGACAGAACGAAGAAACGACCACGGAAGATT
CTTCAAGGAACGATGAGCGCCTTTTCAATCTGGATGAGGAAGCGCAGTGGAAGTGCCGTATAATG
AAGCTGCGACATCGTACTCTCCAAGTGAGTAGAAGTGGGCCCTGCGTGGGGGTTATTTGCACACG
AAAGGAAACAAAGGGAGGATCTTTGGGTATGAGGTGTGTATAGCGTTTCCATTTGGCTCGTATGG
TATATGCAGGCACAGAATACCGATTACTATGCGCGCCAGGCTATCTATTTACCCAATTTCACCCC
GAGTACTGGCGATTGGTTGGCTAGTCACCAGCGTGTGATCGTCGCCGCCCTGGTGGCTTTGATGC
AGCACTGCATATGCGCCTTCCAAATGAAAAGGGGGCATATAAATATGTGCTTCCAACTCCAACCC
TCCACTACCATGTTTTCTCCAATAGACGTTTGGACCTTTCTCGCC


Right flanking sequence: Indices 6141 -- 6640
CTACCGATGGATCTACCCACCAATCCCAATAACGGCTGTTACGTGAGTCTTGCGGTCCCTTCCGG
TGACAAAAGTTGATGATTGATTGGTCGGATTGCTCACTATAGTCGACCCAGACGATCCATACTGT
TACCTCAAGAAACCTTGGATTACATTTTTTCGCTTTACGTTGCATCTCTCGTTCACGAGATGCGG
TGTAAGACGGTGCAAGACTACAGAGTTCGACAGAAATACTTCATGCGAGATCTTTGCAGAGTAGC
AAGATGTTCTCGGTTATTCCATCAAGTCATGACAGGATGTTTGCGCAGAACGTGGGCAGCGTGTA
GTCGCGAACCGTCCCCGTCAGCATCAGGTTCGGTTGCAAGCAACACTCTGATACCAAGTGTCTGG
TGCGTCTTTATATACGATTAAACAACATTCTCTCCGTCTTGAATTACCACTCAGGATCATTACGG
CAGAAGAAGGATCTTTGCCTCTCGACTTTAATCTCGCTGCCTACA


Done.

rsol.ctg.fasta.s6507.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268502

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 12237
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26


Found at i:7874 original size:7 final size:7

*************Found a new SSR********************
 Sequences: ctg1113140268513
    Period size: 9  Copynumber: 2.8  Consensus size: 9

      29733 GAGTGTGAAA

                     
      29743 GGTGGTCCG
          1 GGTGGTCCG

                     
      29752 GGTGGTCCG
          1 GGTGGTCCG

                   
      29761 GGTGGTC
          1 GGTGGTC

      29768 AAGGAGGTTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.20, G:0.56, T:0.24


Consensus pattern (9 bp):   
GGTGGTCCG

Left flanking sequence: Indices 29243 -- 29742
ACGTTCTTCGTGACCTGGATTTTCCTAATTTCTATGGTACTATATATATATAGGCCAATGCATCT
CGCTCCGAGGATCTTCCCCCTTCGCAGGGTGGCCGTTACAGTGGATTCGGTTCAACGCCGTCCCC
TCAACCGGGAACTTCAAACCTCAACTTCGGGTTGTCCAGTGCTGCCGCACCAAGTTTTGCGGATC
TGCAGACTGATCCTGCGGCGGCACTTTCCAAAGGATGGGGTTTCTTGTCTACATTGGTCACAAGT
GCCGCACGTGTGGCAAACGAGTCCGTTGTACAGGTATGAGCATGTACCTTTCGGTATTTATATTA
TACTAATTTAACATAGCCGGGGCTGGAGCGTGCGCGCGACCCTGCATTGAGAGCTGTCGTTGAGC
AGTATACTACGCGTGCTTCGGAGCTGGGGCGCGGAGCTAACGAATGGGGAAGAAGAGAACTTGGT
GTGGATGTGGCGGGGACTGCATCCAGTGCGTGGTCGAGTGTGAAA


Right flanking sequence: Indices 29768 -- 30267
AAGGAGGTTACGGGCGTATCGGGGAGAACTCCAACGAAGATGGCTGGAACTCTTGGCACGATGAC
AGTGGTGCATTGAACCCAGCAAGCACCAGCGCGAACGCCCAGTCCAGTCCAGCAGCCAAAGCGAA
TGAGTGGGATGAGTGGGATGATAAAAATTGGACGACAGCACCCACCGAGACCAGTACCAAGTCTG
GTACTAGACCGGACGCCAAGGCACCGACACCAGCAAAGAAGGATGATGAGTGGGAGGATTGGTAG
ACCTTATGGGTATCTCATTACGTTGCATTAGGGTATCGATACAGTATAATTAATTCAGGTCGTAG
GACTGGTTCCTCCCGGCCTGGACTATACCTGTTTTGCAGTTTGTTTGAGCCTTACCAAGCCTATG
GATGAGGAGCGCGCCCTTGAGCTGGTAACTCTGGCCGCTTAAAAATGAACATTCCAGGATAACCA
TCTCAATGTAGGAGAGTTGTATGACATAATTAATTTGTAAGTGCT


Done.

rsol.ctg.fasta.s6520.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140268515

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 87593
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25


Found at i:59619 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140268526
    Period size: 9  Copynumber: 5.1  Consensus size: 9

       6575 CACGGGTTTA

                     *
       6585 AGCGCAAGAT
          1 AGCG-AAGAC

                     
       6595 AGCGAAGAC
          1 AGCGAAGAC

                     
       6604 AGCGAAGAC
          1 AGCGAAGAC

                     
       6613 AGCGAAGAC
          1 AGCGAAGAC

                     
       6622 AGCGAAGAC
          1 AGCGAAGAC

             
       6631 A
          1 A

       6632 CGAGTGGCGC


Statistics
Matches: 36,  Mismatches: 1, Indels: 1
        0.95            0.03        0.03

Matches are distributed among these distances:
   9   32  0.89
  10    4  0.11

ACGTcount: A:0.45, C:0.21, G:0.32, T:0.02


Consensus pattern (9 bp):   
AGCGAAGAC

Left flanking sequence: Indices 6085 -- 6584
TGACCAACCAGCTCTTTAACAATATCCATGAGATTTAATGTATTTGAATCTGCGAATATAGGTGT
TAGTGTTCGCTATATCGCCGGTTCTTGCCCTATCAACTCGTATCAACTCGTATCAACTGGTCTCG
ACTAAGTCACGTGATATGTTTGGACGCATGATCTGTTGGAGTGGAATGAGGCCCCGAAGCTTTTA
TAATCTTACGTTGGCTCTTAAGCAACTCTGAGATGCATTGAAAGAACGGACATGTAATTAACCAA
AAGTAGGGATAGCACAATATGCTACCTCGAGCAAAATTTCTTAAAAATAACTCTGCCTCTCGTCA
GATTGGATCCATACGCAGACAGCCATTTCATTTGGTCAACGTTTAACTAGTATACAGGTATATAT
GTCATCAACACGATGCCTCTATATGTAGCACAAGAAATCTGAGTCACCTCAGACAGCATGAAGAG
CGAGGGCGTTCGCAGGAGCTCGTAGAGGCGCACAACACGGGTTTA


Right flanking sequence: Indices 6632 -- 7131
CGAGTGGCGCAACCACTGGATGTTTGCTCCCCTGTTAAGAGTCGTTAATTCTTTCCTGAACGCTG
ATCATACCCATGATAACCTGCATGTACCCCTGATTGTTTCTGTCAACCATTATCTCACCGGATAA
GGCGTCAAAGTGCAGCAAGATCAAGACCTATCTCGATTGGTATCTCTTATTTGCAGCAGTAGCAA
ACAAAAAGTTGTACTCACTAGTCGTGAAGACCCACTTTAAATTCTAACGTTGGGTCGAGGGGGCT
TGGGACATGCGACCGACGTTATCGACGGTTCCGTACAGTATCATGCAGTCAAGTTAGTTAGGGTA
ATATACTAGTGGCAACGCCGGTGGTGTTGACGGTGGAGGTGGAGATCAATCGAACATGCAGGGTA
ACTTCTGTACTGGCCGGCAAAAATTGTCAAACGGGACGGTGTCGAGCCAAAGTAATACAATCAAC
AATCACGTAGTTCGCATGACCTAATAAGGTTGGAGACCACAGTGA



Found at i:10260 original size:27 final size:27

*************Found a new SSR********************
 Sequences: ctg1113140268547
    Period size: 9  Copynumber: 10.1  Consensus size: 9

       1313 TGGCCCCACC

                     
       1323 CGTCCTCCT
          1 CGTCCTCCT

                     
       1332 CGTCCTCCT
          1 CGTCCTCCT

                     
       1341 CGT-CT--T
          1 CGTCCTCCT

                   * 
       1347 CGTCCTCAT
          1 CGTCCTCCT

             *       
       1356 CCTCCTCCT
          1 CGTCCTCCT

                *    
       1365 CGTCTTCCT
          1 CGTCCTCCT

                *    
       1374 CGTCTTCCT
          1 CGTCCTCCT

                *    
       1383 CGTCTTCCT
          1 CGTCCTCCT

                *    
       1392 CGTCTTCCT
          1 CGTCCTCCT

                *    
       1401 CGTCTTCCT
          1 CGTCCTCCT

             
       1410 C
          1 C

       1411 TTCTCGGTTT


Statistics
Matches: 72,  Mismatches: 4, Indels: 6
        0.88            0.05        0.07

Matches are distributed among these distances:
   6    4  0.06
   7    2  0.03
   8    2  0.03
   9   64  0.89

ACGTcount: A:0.01, C:0.49, G:0.10, T:0.40


Consensus pattern (9 bp):   
CGTCCTCCT

Left flanking sequence: Indices 823 -- 1322
TCCGTGGAGTTCCAATGCGAGAACCACTGGGTTTCGACCGACCATCGTGGAGATATACTCAGAGC
GACCGAGGACGATGCGCTTGGTTAGACCACAATGATCCCATGTCGTCAGGCGTAGCTGTTCTGTA
GGAGTAAGGCCAATGCCGGTTAATTGGTGTTGAACCCGACAAAATTAGGTGTAAGCTCACCAGTT
AGGGCAATGACGAATCTAAGCACGCCTGGCCCGTGCTCGACGACCGCGAGGGGCTGCCGATCTGC
CGGTATTTGCCCGGCCACGACCCCGACCACGTCCTCGGCCACGACCCCGGCCTCTGTCAACTGAT
TGACCTCGTACGGGTCGAGCGCGATTTCCGGGGCCTCGTCCACGGGGTAGGCGGATGGTTTGGGC
GCGCGCGCGCGCGCGTGGAGGCACATGAGCTATGTTATCCTCCTCGTCCTCTTCCTCCTCGTCTT
CGTCTTCGTCTTCGTCTTCGTCTTCGTCTTCGTCCTGGCCCCACC


Right flanking sequence: Indices 1411 -- 1910
TTCTCGGTTTTCGGCATCGGCATCGGCGTCGCCTTCATCTTCTTCGTCCTCGGCGTTGGCGTTGG
CGTTGGCGTTGGCGTTGGCGTTGGTACCGTCCCTGTCCCTATCCTGTTCCTCGTCCTCGTCAGGA
TCCCGCCTCCACATCCCGTCTTGACCCCAGTGCCGAACAAGCTCGTACATGAAATACGAAGAAAA
GATATTGATAAAAAATTTCGAGTACGTGGAAAGAGTGTCGGATCGGAGGGATATATAGTCGTTTT
GCTCGGCAGCGGTAAACTTCGGCGCAAGGTGGCAGGTCATGCGTACCGACGAAAGGGGGATAATA
GCGGTCACCCGCCTTCTTCGTGATTGCTGTGGTTCGTTGTAAAAAGCCCTGTCGGCTCAACCGGG
TTGGCGCTACAGTAGTTGAACAACTCGACAAATGCAAGGTGGCCTGGGTAAACATGCCGGATTTG
ATCAGGCAATCGGAAAATGACTCGAACGCGAGCCGGTCGATAACC



Found at i:1471 original size:6 final size:6

*************Found a new SSR********************
 Sequences: ctg1113140268547
    Period size: 9  Copynumber: 2.9  Consensus size: 9

       2434 TCGGGCTGAT

                     
       2444 CTTCGGGCG
          1 CTTCGGGCG

                     
       2453 CTTCGGGCG
          1 CTTCGGGCG

                    
       2462 CTTCGGGC
          1 CTTCGGGC

       2470 TGATCTTCGC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.00, C:0.35, G:0.42, T:0.23


Consensus pattern (9 bp):   
CTTCGGGCG

Left flanking sequence: Indices 1944 -- 2443
GAGTAGCAGCAGGTAAGCAAACTCACGATGAAGCCCAACAACGTTATCCCGCATGAGCACGAGAA
CCGTATCGAAGCGCGCCGGCCGGCTCAATCGGTGGTACCTGTCGTATTTTGCCGGTTGTGCGCGC
ACTACATCCACTGAGCTGTCTTCGGATGGCTTGAACGGGGGAGGTGGGTGGAAGAGGCGGGCGCG
GGACCAGACGTCAAATCGATAGTCGCCATCCTCAAAGTCAAGGTCTTGGTACTGAGGGGCTGTCC
GAGCGAGGTGGGACCGGAGGGTTGGTAAGATGTCAGTTGCCCCGTGTCGCCTGATTATGTCATCG
GCCGAGACCCTCTTCCATGTCGGGGTTTTTGCAACGACAATCTCAGGGCTTGGATAGAACGTTTC
ACTTCCCTCGGCATTGCTCTCGACGTCCCATTCGACACATTGAGAGATATCGACATCCATTTCTT
CCAGCTCGTGCTCCTGCTGTTCGTTCACTGGTTCTTCGGGCTGAT


Right flanking sequence: Indices 2470 -- 2969
TGATCTTCGCCACCCCTCTGCTCTTCGTCCTCGTCTTCGTCAAGCCATGCGTCCCAAAATTCGGC
TTCCTCATCATCAGGGTCGACTTCCTCGTCGGGATCGCCTTCTTCAAGCCCCTCTTGCTTCCCCT
CCAGGTACGAGGCATGCATCGCAATTGCTTCGAGACGCTGGATATACAATGCCATTTGTTTCGTA
GCATTGACCTTGTTAGATGCTCGGTAGCCCATCTTCGCAAAATCGATATGTAATCGCTCGGATGT
TTCGGTATTGTAGCCGTCAGGGGTACCGAGCTCGCGGATAAGGTGAGTATAATGGGATATCATGT
GCAATTTAGGGATCCCATGAAACCCCTTGTCGGTTGTGACGGCCCCGAGCTCCTTGAACACGTCC
TTGTGCTCATGAAAGGTGCGTAACGCATCCTCCATGGCATCCAGATCCTCGTCAGTAACCGACCC
CGCATGAGCCAGGTACATAAAATCCATCAAAGATCGAGCTGCGCG



Found at i:4575 original size:15 final size:15

*************Found a new SSR********************
 Sequences: ctg1113140257286
    Period size: 9  Copynumber: 8.9  Consensus size: 9

       2441 GCCTTGTCGT

                     
       2451 TGCTGTTGC
          1 TGCTGTTGC

              *  *  *
       2460 TGTTGCTGT
          1 TGCTGTTGC

              *      
       2469 TGATGTTGC
          1 TGCTGTTGC

                 *   
       2478 TGCTGCTGC
          1 TGCTGTTGC

                    *
       2487 TGCTGTTGA
          1 TGCTGTTGC

                      
       2496 TGCTGTTGAC
          1 TGCTGTTG-C

                 *   
       2506 -GCTGCTGC
          1 TGCTGTTGC

                     
       2514 TGCTGTTGC
          1 TGCTGTTGC

              *     
       2523 TGTTGTTG
          1 TGCTGTTG

       2531 TTGACTACGA


Statistics
Matches: 55,  Mismatches: 14, Indels: 4
        0.75            0.19        0.05

Matches are distributed among these distances:
   8    1  0.02
   9   54  0.98

ACGTcount: A:0.04, C:0.19, G:0.34, T:0.44


Consensus pattern (9 bp):   
TGCTGTTGC

Left flanking sequence: Indices 1951 -- 2450
GTGAAAAGAAACAGGACCGTGACGAGCATGTCTCGATGGCGGCATGACTACAGAACAAGATATGA
AAACATACACAACACTGGAGTACCAGAGTGAGATGAACAACGGGGAAACTCAAAAATATAGGAAA
TTGCGATTTTTCTAGTAGTTTCTTTGAGGTACTGCGCGAGGGGGGATTGGGGGATGAATCGGGTG
GCACTTGACAGATAAACAGACGCCGCGAAACATCTTTGGCGGCGCAAGGCTTGACCAAACAATCC
CTCACTATTCCCTTTTCGGGTGATCGAGATCCAATAAACCCAAAAATGATGTCATTGCGCTTCCA
GATGGCTCTTGCGCTTCTCAGATTCTTTCGATTGAAAAGAAAAGAGAATAAATAATTAACGGCTG
AGCTTAATACACAAATATCCCTACACAAAATGAAAATGACGAGAGGAAAATACAAGACAACGATG
TCATGCGCACATGTTCAACTAATCAAAATTCACTAGCCTTGTCGT


Right flanking sequence: Indices 2531 -- 3030
TTGACTACGAATGAACTGTTGAAGATGCTCCAATCCCGGTTGCCCACCAGGCAGACCCGGCTGTG
GTCCCGGCTGTGGTCCTGGCTGCGGCTGAAGTCCCATACCCATATTCATGTTCCCCACCATGGCC
TGCATCTGCTGCCGTATACGAGGTACTAGCTGCTGAATTTGCATCAACATCATCTGTTTTTGCTG
TGGCGACGCAGCAGCCAGTTGAGCAGGTGTAAAACCAAGTCGAGCGAGCGCCATTTGACTGAGCA
TGCGATTAAAATGAGTTTGCGCGGCCGGGTTCACACTAGCTGCTGCCGCCGCCGCTATTATCGCA
GCTTGGTTCAATCCCGGAGCCATACTGGGGTTTAATCCCGGCGCGCCGGCAATGCCAGCAGCAGC
CTGATTCATCCCGTTCATACTTGCGGCGGCGTTCATTGCAGCAACAGCGGGGTTTATCCCTTGCA
TCATGGCCGAGTTGATACCTGCGCCGGGAACGCCTGTGCCGGGGA



Found at i:2603 original size:12 final size:12

*************Found a new SSR********************
 Sequences: ctg1113140257391
    Period size: 9  Copynumber: 3.8  Consensus size: 9

       1611 ACCCTACACT

                     
       1621 TAACATACC
          1 TAACATACC

                     
       1630 TAACATACC
          1 TAACATACC

                     
       1639 TAACATACC
          1 TAACATACC

                   
       1648 TAACATA
          1 TAACATA

       1655 TTAGCCATAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   25  1.00

ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24


Consensus pattern (9 bp):   
TAACATACC

Left flanking sequence: Indices 1121 -- 1620
AGGGCATGGTGTAAAGAGATGGTGGTCAGAAGCAAGGCTTCGGGATAGGGCGCGTTCAATTTTAT
AGGCAGCTGTTGTCCACATTTGGCTATGATTGTCGGTCGAGATCACGTGAGTATGTGCGGTTTCG
TCGGTGCGCCTGACAGGTTTCATGCCAGTAGGGACACTCAGAGTAGGAATCGCTATCCCAAGTGA
TTCTATTCCCCTATTGGTAAACTCAAGTCCGCAGTAGGACCACATGTACAGCGTCCAAGGGGCTG
GTAATGCGCTGGTGTGGTTGGTCGAATGTTAATTCCTGTCTTACATGAAACACCTCATACTTATT
CTACCTGCAATACTAGTTGAGAAGCGCATGCACTAGCCATACCAAAAATTGACCCGCGAGAAGGG
TGGTTTCACTAAGAAATCGCTCAGCGCCGAGCTCAGGGAAACTTGCTCGAAGCATACATTGTGCC
GAGTCGAGGCTCGTACTCCCCTTTAGATCCGCATGACCCTACACT


Right flanking sequence: Indices 1655 -- 2154
TTAGCCATAATAGGCTCACCTCCTATGATGGTAGAGGACGAGGAGTCCGATGAGAAGAAATTGGT
GGGGCAACGGTTCGCTTACGTAATCAAACGTAGCATATTGAAAGGCGACAATGTTAGCCCACACT
GGATTTGATAACCTATTAAATTGTGTTCCTATAACGGTCCAATCATTACTGGCGTTCCTGACTCC
CGGATACATCCTTCAAGGCTACTAACCGCTGAAATATACAGTATCGGACAAAAGGTCGTCAAGAG
AATTTCAAATCCCGCCAGTTTGCCTATTTCTCGGGCATTTCTGTATCGTATGCCATGTATCTACT
GTCGATCGAAAGCCAGAAGTCGCAGCTACATTTCGCATATTTAATTGTAGAAAACGAATGAGATT
GTCAGGAGATATGAAGAAACTCAAACTGAAATGGGCTGGCTGGGTTTTTGTCCCCAGGGCTCAAA
CTTTTAAGGTCTTACCAGTACTTCTTACCTGGAAGGACTAGGCAT


Done.

rsol.ctg.fasta.s812.2.7.7.80.10.50.500.txt.html

Tandem Repeats Finder Program written by:

                 Gary Benson
      Department of Biomathematical Sciences
          Mount Sinai School of Medicine

Version 3.21

Sequence: ctg1113140257402

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, MAXDISTANCE

Length: 2163
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27


Found at i:115 original size:11 final size:11

*************Found a new SSR********************
 Sequences: ctg1113140257578
    Period size: 9  Copynumber: 4.3  Consensus size: 9

        638 CCGCGGATGT

                     
        648 TGCTGTCCC
          1 TGCTGTCCC

                     
        657 TGCTGTCCC
          1 TGCTGTCCC

                 *   
        666 TGCTGCCCC
          1 TGCTGTCCC

              *   *  
        675 TGTTGTTCC
          1 TGCTGTCCC

               
        684 TGC
          1 TGC

        687 CGCTCCTGCC


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
   9   25  1.00

ACGTcount: A:0.00, C:0.41, G:0.23, T:0.36


Consensus pattern (9 bp):   
TGCTGTCCC

Left flanking sequence: Indices 148 -- 647
GACGAAATTTTATCAGGATATGCGAACAGCAGATTGATAATGGAAAACCGTTTGTTCGCTGGCCG
CAAAGAACTGGCCCTCAAGGTTTTTCACCCTTCCCAGAACGACAAAGATGAAGATGAAGATGATG
AAGACGAAGCCCAGGAGGGCCCCGCCCGTTCTTCTGTTCGTGCGCGGCCCCGCAAAAACCAGACT
TCGTTGACAGACGGCGGCCAAACAGCTGGGCCTTCGAGCAAGGTCTCCAAGTCTACCAAGAGAAA
GGCTGATGCTGCATCGAACATCAAGGATGGGGATTCGGTACAGATAGAAGTTGGGAGCCAGAAAA
GGCGTCGCAAGGTAGCGAAAGCAGCCCAGCAAGTCGAAGTTGATCAGCCATCCACATCTATTGTA
CCTGAGCAAGCATCATCCGAGTCAGAGCCAAAAGCGAAGCAACGCCCTCGTCCTCGTCCTCGCCC
TCGTCCTCTCCCAATCCCACCTAGCGTGCTGGCCTCCGCGGATGT


Right flanking sequence: Indices 687 -- 1186
CGCTCCTGCCGCTCCTGCCGCTCCTGCTGCTCCTGCCGCTCCTGCTGCTCCTGCTGCTCCTGCTG
CTCCTGCTGCTCCTGCTGCTCCTATCGTTCCAGCTGCTCCTATCGTTCCCGCTGCTCCTATCGTT
CCCGCAACTATCGTTCCCACAACTCCTATTGTTCCCACAGCTCCTATTGTTCCCACAGCTTCTTC
TTTCCCTGCTGCTCCCACCATCCAGCAAATGGAACCATCGAGTTCGATACCGTTCGTCCAGCTCC
CAATGTTTGCTTCTTCGGCTGCACAAGTGGCTCCTTTCATGTCCGATATGCTATCCTTGGGAAAT
CACTCAACACAGATGCAGCATACCGACAATGCTTGGGATTCTGATCCCGATGTTGATGTTGACGG
CGATAGCAATAGCAATAGCAATAGCAATGCGTGTATGGAAAGTGGTCAACAAATGGAGGGACGGA
TGCTGGGGGATAGGCTTGCTTTGCCCGGAAAACCTCCCCTCAATG



Found at i:706 original size:9 final size:9

*************Found a new SSR********************
 Sequences: ctg1113140257578
    Period size: 9  Copynumber: 13.3  Consensus size: 9

        645 TGTTGCTGTC

                     
        655 CCTGCTG-T
          1 CCTGCTGCT

                     *
        663 CCCTGCTGCC
          1 -CCTGCTGCT

                *  * 
        673 CCTGTTGTT
          1 CCTGCTGCT

                 *   
        682 CCTGCCGCT
          1 CCTGCTGCT

                 *   
        691 CCTGCCGCT
          1 CCTGCTGCT

                 *   
        700 CCTGCCGCT
          1 CCTGCTGCT

                     
        709 CCTGCTGCT
          1 CCTGCTGCT

                 *   
        718 CCTGCCGCT
          1 CCTGCTGCT

                     
        727 CCTGCTGCT
          1 CCTGCTGCT

                     
        736 CCTGCTGCT
          1 CCTGCTGCT

                     
        745 CCTGCTGCT
          1 CCTGCTGCT

                     
        754 CCTGCTGCT
          1 CCTGCTGCT

                     
        763 CCTGCTGCT
          1 CCTGCTGCT

               
        772 CCT
          1 CCT

        775 ATCGTTCCAG


Statistics
Matches: 100,  Mismatches: 10, Indels: 2
        0.89            0.09        0.02

Matches are distributed among these distances:
   9  100  1.00

ACGTcount: A:0.00, C:0.47, G:0.22, T:0.31


Consensus pattern (9 bp):   
CCTGCTGCT

Left flanking sequence: Indices 155 -- 654
TTTTATCAGGATATGCGAACAGCAGATTGATAATGGAAAACCGTTTGTTCGCTGGCCGCAAAGAA
CTGGCCCTCAAGGTTTTTCACCCTTCCCAGAACGACAAAGATGAAGATGAAGATGATGAAGACGA
AGCCCAGGAGGGCCCCGCCCGTTCTTCTGTTCGTGCGCGGCCCCGCAAAAACCAGACTTCGTTGA
CAGACGGCGGCCAAACAGCTGGGCCTTCGAGCAAGGTCTCCAAGTCTACCAAGAGAAAGGCTGAT
GCTGCATCGAACATCAAGGATGGGGATTCGGTACAGATAGAAGTTGGGAGCCAGAAAAGGCGTCG
CAAGGTAGCGAAAGCAGCCCAGCAAGTCGAAGTTGATCAGCCATCCACATCTATTGTACCTGAGC
AAGCATCATCCGAGTCAGAGCCAAAAGCGAAGCAACGCCCTCGTCCTCGTCCTCGCCCTCGTCCT
CTCCCAATCCCACCTAGCGTGCTGGCCTCCGCGGATGTTGCTGTC


Right flanking sequence: Indices 775 -- 1274
ATCGTTCCAGCTGCTCCTATCGTTCCCGCTGCTCCTATCGTTCCCGCAACTATCGTTCCCACAAC
TCCTATTGTTCCCACAGCTCCTATTGTTCCCACAGCTTCTTCTTTCCCTGCTGCTCCCACCATCC
AGCAAATGGAACCATCGAGTTCGATACCGTTCGTCCAGCTCCCAATGTTTGCTTCTTCGGCTGCA
CAAGTGGCTCCTTTCATGTCCGATATGCTATCCTTGGGAAATCACTCAACACAGATGCAGCATAC
CGACAATGCTTGGGATTCTGATCCCGATGTTGATGTTGACGGCGATAGCAATAGCAATAGCAATA
GCAATGCGTGTATGGAAAGTGGTCAACAAATGGAGGGACGGATGCTGGGGGATAGGCTTGCTTTG
CCCGGAAAACCTCCCCTCAATGATGACATGGATACATCGCTCCAAAGCCCAAAGCTAGGTAAGTC
ATATTTTACAGATGCCTGTGGATTTCTAGCACTGGTTTCAGCCGC



Found at i:734 original size:3 final size:3